Wall clock time and date at job start Wed Apr 1 2020 00:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.44554 * 2 1 4 4 C 1.53035 * 109.46137 * 240.02874 * 2 1 3 5 5 C 1.53195 * 109.31200 * 178.61273 * 4 2 1 6 6 N 1.46931 * 108.77110 * 54.63842 * 5 4 2 7 7 C 1.34776 * 120.62930 * 126.37290 * 6 5 4 8 8 O 1.21275 * 120.00127 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99953 * 0.02562 * 7 6 5 10 10 C 1.53004 * 109.47371 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47287 * 180.02562 * 10 9 7 12 12 N 1.46511 * 109.47085 * 180.02562 * 11 10 9 13 13 C 1.35309 * 125.87011 * 124.99733 * 12 11 10 14 14 C 1.35346 * 106.17518 * 179.97438 * 13 12 11 15 15 N 1.33769 * 106.49638 * 0.02562 * 14 13 12 16 16 N 1.28632 * 108.88871 * 359.73444 * 15 14 13 17 17 C 1.46919 * 118.74092 * 306.38691 * 6 5 4 18 18 C 1.53045 * 109.45681 * 119.96178 * 2 1 3 19 19 H 1.09000 * 109.52739 * 61.42112 * 18 2 1 20 20 C 1.53000 * 109.49689 * 301.33571 * 18 2 1 21 21 N 1.46499 * 109.46840 * 175.16149 * 20 18 2 22 22 C 1.36936 * 120.00002 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00140 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00367 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99972 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00444 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47261 * 59.99582 * 26 24 22 28 28 H 1.48502 * 109.47375 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46897 * 300.00142 * 26 24 22 30 30 H 1.09002 * 109.47420 * 300.03954 * 1 2 3 31 31 H 1.09003 * 109.46607 * 60.03869 * 1 2 3 32 32 H 1.08998 * 109.47276 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49551 * 58.66578 * 4 2 1 34 34 H 1.08993 * 109.49844 * 298.56651 * 4 2 1 35 35 H 1.08998 * 109.59148 * 294.85230 * 5 4 2 36 36 H 1.08995 * 109.70304 * 174.49327 * 5 4 2 37 37 H 1.09003 * 109.47752 * 300.00572 * 9 7 6 38 38 H 1.09004 * 109.46783 * 60.00627 * 9 7 6 39 39 H 1.09003 * 109.46994 * 300.00846 * 10 9 7 40 40 H 1.09009 * 109.46806 * 59.99998 * 10 9 7 41 41 H 1.08998 * 109.47223 * 299.99987 * 11 10 9 42 42 H 1.08996 * 109.47301 * 60.00268 * 11 10 9 43 43 H 1.08004 * 126.91272 * 359.97438 * 13 12 11 44 44 H 1.08002 * 126.75052 * 180.02562 * 14 13 12 45 45 H 1.08999 * 109.58985 * 293.82483 * 17 6 5 46 46 H 1.08992 * 109.58857 * 173.39578 * 17 6 5 47 47 H 1.09002 * 109.47398 * 295.16475 * 20 18 2 48 48 H 1.09001 * 109.47194 * 55.16655 * 20 18 2 49 49 H 0.97000 * 120.00420 * 0.02562 * 21 20 18 50 50 H 0.96996 * 120.00586 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0003 7 6 4.9615 -2.2577 0.0003 8 8 5.3632 -2.7118 1.0506 9 6 5.4614 -2.8216 -1.3047 10 6 6.4582 -3.9481 -1.0251 11 6 6.9663 -4.5201 -2.3500 12 7 7.9203 -5.5993 -2.0823 13 6 7.8405 -6.8639 -2.5567 14 6 8.9186 -7.5192 -2.0666 15 7 9.5960 -6.6352 -1.3256 16 7 8.9813 -5.5057 -1.3594 17 6 3.5714 -0.6885 1.2644 18 6 2.0398 -0.7207 1.2502 19 1 1.6978 -1.7556 1.2391 20 6 1.5027 -0.0187 2.4990 21 7 1.8948 -0.7748 3.6909 22 6 1.5239 -0.3350 4.9336 23 1 0.9418 0.5692 5.0349 24 6 1.8959 -1.0511 6.0630 25 7 2.6048 -2.1532 5.9396 26 14 1.3892 -0.4515 7.7581 27 1 -0.0924 -0.3952 7.8409 28 1 1.9070 -1.3865 8.7891 29 1 1.9498 0.9036 7.9917 30 1 -0.3634 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8904 32 1 -0.3634 -1.0276 0.0005 33 1 1.6573 -0.2208 -2.1398 34 1 1.6979 -1.7556 -1.2381 35 1 3.9144 0.3409 -1.3672 36 1 3.9438 -1.2831 -2.0983 37 1 4.6208 -3.2144 -1.8767 38 1 5.9533 -2.0342 -1.8759 39 1 7.2989 -3.5557 -0.4529 40 1 5.9660 -4.7354 -0.4540 41 1 6.1258 -4.9125 -2.9225 42 1 7.4586 -3.7328 -2.9207 43 1 7.0713 -7.2690 -3.1976 44 1 9.1805 -8.5526 -2.2397 45 1 3.9143 0.3410 1.3675 46 1 3.9416 -1.2844 2.0986 47 1 1.9155 0.9886 2.5556 48 1 0.4154 0.0367 2.4454 49 1 2.4173 -1.5870 3.6000 50 1 2.8644 -2.6538 6.7287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132884177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:00 Heat of formation + Delta-G solvation = 35.112174 kcal Electronic energy + Delta-G solvation = -28897.875589 eV Core-core repulsion = 24961.070279 eV Total energy + Delta-G solvation = -3936.805310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.13520 -41.37382 -39.29754 -36.78790 -36.62259 -35.07926 -33.72656 -33.43578 -31.92270 -31.48604 -29.59749 -28.53193 -27.07914 -25.14153 -24.60351 -23.82030 -23.37436 -22.57031 -22.05274 -21.08242 -19.92743 -19.17412 -18.60906 -17.88350 -17.32274 -16.92104 -16.83435 -16.76962 -15.90756 -15.61198 -15.58049 -15.51369 -15.30445 -15.00868 -14.87871 -14.43958 -14.21921 -14.05757 -14.04206 -13.57085 -13.17861 -13.14858 -13.05943 -12.84503 -12.69190 -12.62228 -12.58310 -12.52387 -12.22462 -12.01966 -11.98226 -11.92584 -11.76438 -11.75460 -11.30560 -11.16786 -11.05741 -10.96916 -10.72249 -10.30223 -9.61085 -9.02927 -7.97311 -5.27902 0.71854 1.42041 1.46661 1.53041 1.53416 1.66198 1.66518 2.05926 2.52861 3.35367 3.39256 3.59680 3.69136 3.72791 3.82907 3.83775 3.89379 4.09719 4.10357 4.19957 4.25583 4.30739 4.34572 4.37165 4.39000 4.46370 4.58546 4.62815 4.64741 4.76262 4.78965 4.81386 4.88010 4.97127 5.00799 5.00955 5.10319 5.14964 5.19048 5.25057 5.30359 5.32104 5.44665 5.47470 5.58589 5.60025 5.74807 6.22970 6.49759 7.24213 7.28220 7.57015 8.05672 8.27245 9.25977 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010646 B = 0.002495 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.427211 B =11219.846525 C =13450.807546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 H 0.081 0.919 4 C -0.123 4.123 5 C 0.098 3.902 6 N -0.609 5.609 7 C 0.493 3.507 8 O -0.603 6.603 9 C -0.117 4.117 10 C -0.116 4.116 11 C 0.115 3.885 12 N -0.289 5.289 13 C -0.031 4.031 14 C -0.074 4.074 15 N -0.324 5.324 16 N -0.135 5.135 17 C 0.126 3.874 18 C -0.086 4.086 19 H 0.049 0.951 20 C 0.155 3.845 21 N -0.748 5.748 22 C -0.246 4.246 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.978 3.022 27 H -0.273 1.273 28 H -0.298 1.298 29 H -0.276 1.276 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.158 0.842 42 H 0.126 0.874 43 H 0.242 0.758 44 H 0.215 0.785 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.020 0.980 48 H 0.033 0.967 49 H 0.369 0.631 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -1.553 -32.752 32.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.160 4.160 5 C -0.022 4.022 6 N -0.342 5.342 7 C 0.283 3.717 8 O -0.484 6.484 9 C -0.157 4.157 10 C -0.155 4.155 11 C -0.004 4.004 12 N -0.083 5.083 13 C -0.183 4.183 14 C -0.232 4.232 15 N -0.189 5.189 16 N -0.114 5.114 17 C 0.003 3.997 18 C -0.106 4.106 19 H 0.068 0.932 20 C 0.029 3.971 21 N -0.391 5.391 22 C -0.378 4.378 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.199 1.199 28 H -0.224 1.224 29 H -0.202 1.202 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.176 0.824 42 H 0.144 0.856 43 H 0.258 0.742 44 H 0.232 0.768 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.038 0.962 48 H 0.051 0.949 49 H 0.200 0.800 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.255 -0.679 -31.233 31.322 hybrid contribution -0.505 -0.935 1.591 1.913 sum 1.750 -1.614 -29.642 29.737 Atomic orbital electron populations 1.21859 0.94482 1.01660 1.02278 1.21107 0.96312 0.99597 0.92893 0.90109 1.21989 0.94722 1.01358 0.97976 1.22217 0.94632 1.00940 0.84438 1.48325 1.42724 1.35070 1.08041 1.21727 0.78359 0.78972 0.92610 1.90787 1.59526 1.61365 1.36704 1.21624 1.01205 0.99351 0.93529 1.21480 0.99069 0.98256 0.96680 1.22540 0.91640 0.88390 0.97835 1.47885 1.17657 1.11714 1.31087 1.24514 1.04063 0.84348 1.05349 1.24307 0.95398 1.02859 1.00648 1.75063 1.26143 0.97663 1.19986 1.78295 0.98169 1.19600 1.15346 1.21299 0.94077 0.97925 0.86443 1.21550 0.93867 0.99419 0.95765 0.93246 1.20948 0.97136 0.93821 0.85231 1.42685 1.65049 1.29286 1.02076 1.19639 1.26799 1.06311 0.85035 0.90271 1.25689 1.01568 0.97986 1.02079 1.69867 1.44269 1.19055 1.29227 0.85148 0.78068 0.77142 0.79031 1.19892 1.22402 1.20166 0.93657 0.90058 0.93514 0.86860 0.91907 0.89688 0.85457 0.84058 0.84424 0.93273 0.93260 0.82418 0.85643 0.74174 0.76841 0.91729 0.93879 0.96181 0.94904 0.79963 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.81 71.98 0.63 -2.22 16 2 C -0.08 -1.63 2.23 -10.77 -0.02 -1.66 16 3 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.12 -1.51 5.36 30.67 0.16 -1.35 16 5 C 0.10 1.14 6.34 86.36 0.55 1.68 16 6 N -0.61 -15.00 2.97 -818.93 -2.43 -17.43 16 7 C 0.49 13.60 7.70 87.66 0.67 14.28 16 8 O -0.60 -25.76 15.39 -3.01 -0.05 -25.81 16 9 C -0.12 -1.39 4.05 29.85 0.12 -1.27 16 10 C -0.12 -2.01 4.63 30.59 0.14 -1.87 16 11 C 0.12 0.90 6.46 86.37 0.56 1.45 16 12 N -0.29 -4.91 3.44 -347.73 -1.20 -6.11 16 13 C -0.03 -0.36 11.57 83.49 0.97 0.60 16 14 C -0.07 -1.30 12.05 83.73 1.01 -0.29 16 15 N -0.32 -9.10 12.41 -58.26 -0.72 -9.82 16 16 N -0.13 -3.72 12.92 37.02 0.48 -3.25 16 17 C 0.13 4.36 5.52 86.37 0.48 4.84 16 18 C -0.09 -2.78 1.92 -10.71 -0.02 -2.80 16 19 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 20 C 0.16 6.34 5.41 86.38 0.47 6.81 16 21 N -0.75 -40.75 5.38 -343.45 -1.85 -42.59 16 22 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 23 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 24 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 25 N -0.97 -64.47 13.06 21.65 0.28 -64.19 16 26 Si 0.98 48.55 29.55 68.60 2.03 50.58 16 27 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 28 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 29 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 30 H 0.04 1.06 6.30 -2.39 -0.02 1.05 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.13 0.35 5.93 -2.39 -0.01 0.34 16 37 H 0.14 0.48 7.69 -2.39 -0.02 0.46 16 38 H 0.14 0.60 7.94 -2.39 -0.02 0.58 16 39 H 0.05 1.27 8.08 -2.39 -0.02 1.25 16 40 H 0.05 1.16 8.10 -2.38 -0.02 1.14 16 41 H 0.16 -0.34 8.07 -2.39 -0.02 -0.36 16 42 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.24 0.00 8.06 -2.91 -0.02 -0.03 16 44 H 0.21 2.15 8.06 -2.91 -0.02 2.12 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.04 2.02 6.20 -2.39 -0.01 2.01 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.03 1.32 6.15 -2.39 -0.01 1.30 16 49 H 0.37 22.16 6.89 -92.71 -0.64 21.52 16 50 H 0.25 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -99.15 399.01 3.86 -95.29 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.29 Total: 23.27 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 7.02 Total: 0.04 kcal Atomic # 7 Polarization: -137.95 SS G_CDS: -5.44 Total: -143.39 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.05 Total: -25.81 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -99.15 3.86 -95.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132884177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.403 kcal (2) G-P(sol) polarization free energy of solvation -99.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds