Wall clock time and date at job start Wed Apr 1 2020 00:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.44559 * 2 1 4 4 C 1.53040 * 109.45888 * 240.03598 * 2 1 3 5 5 C 1.53188 * 109.31221 * 301.34418 * 4 2 1 6 6 N 1.46921 * 108.77702 * 305.36511 * 5 4 2 7 7 C 1.34778 * 120.62991 * 233.58921 * 6 5 4 8 8 O 1.21282 * 119.99956 * 180.02562 * 7 6 5 9 9 C 1.50693 * 120.00222 * 0.02562 * 7 6 5 10 10 C 1.53007 * 109.47265 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47074 * 179.97438 * 10 9 7 12 12 C 1.39674 * 127.05061 * 124.70840 * 11 10 9 13 13 N 1.31379 * 105.90189 * 179.83739 * 12 11 10 14 14 N 1.28605 * 108.71619 * 0.42888 * 13 12 11 15 15 C 1.46495 * 124.61730 * 179.71795 * 14 13 12 16 16 N 1.28600 * 110.75777 * 359.71851 * 14 13 12 17 17 C 1.46923 * 118.73736 * 53.60751 * 6 5 4 18 18 C 1.53041 * 109.45902 * 119.96895 * 2 1 3 19 19 H 1.09001 * 109.51934 * 178.62684 * 18 2 1 20 20 C 1.53000 * 109.49533 * 298.70150 * 18 2 1 21 21 N 1.46499 * 109.46840 * 184.83838 * 20 18 2 22 22 C 1.36936 * 120.00002 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00140 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00367 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99972 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00444 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46864 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47259 * 119.99588 * 26 24 22 29 29 H 1.48495 * 109.47205 * 239.99955 * 26 24 22 30 30 H 1.08996 * 109.47019 * 300.03089 * 1 2 3 31 31 H 1.08997 * 109.47177 * 60.03452 * 1 2 3 32 32 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.49735 * 181.39075 * 4 2 1 34 34 H 1.09004 * 109.49932 * 61.29619 * 4 2 1 35 35 H 1.09008 * 109.58479 * 185.57747 * 5 4 2 36 36 H 1.08996 * 109.70643 * 65.22835 * 5 4 2 37 37 H 1.09004 * 109.47016 * 299.99606 * 9 7 6 38 38 H 1.09000 * 109.47345 * 60.00017 * 9 7 6 39 39 H 1.09004 * 109.46622 * 299.99651 * 10 9 7 40 40 H 1.09000 * 109.47085 * 59.99662 * 10 9 7 41 41 H 1.08001 * 127.05109 * 0.02562 * 12 11 10 42 42 H 1.08999 * 109.47106 * 269.99964 * 15 14 13 43 43 H 1.08993 * 109.47372 * 29.99759 * 15 14 13 44 44 H 1.09003 * 109.46976 * 150.00413 * 15 14 13 45 45 H 1.09006 * 109.58550 * 186.60523 * 17 6 5 46 46 H 1.08996 * 109.58373 * 66.18439 * 17 6 5 47 47 H 1.09002 * 109.47398 * 304.84165 * 20 18 2 48 48 H 1.09001 * 109.47194 * 64.84345 * 20 18 2 49 49 H 0.97000 * 120.00420 * 0.02562 * 21 20 18 50 50 H 0.96996 * 120.00586 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 1.4995 -2.1541 -1.2643 6 7 1.8625 -2.8088 -0.0001 7 6 2.5156 -3.9878 -0.0002 8 8 2.8093 -4.5184 1.0501 9 6 2.8811 -4.6467 -1.3053 10 6 3.6094 -5.9629 -1.0257 11 6 3.9743 -6.6221 -2.3309 12 6 5.2460 -7.0275 -2.7423 13 7 5.0881 -7.5508 -3.9370 14 7 3.8450 -7.4776 -4.2585 15 6 3.2833 -7.9552 -5.5243 16 7 3.1624 -6.9281 -3.3173 17 6 1.4996 -2.1541 1.2641 18 6 2.0398 -0.7208 1.2501 19 1 3.1296 -0.7428 1.2388 20 6 1.5569 0.0194 2.4990 21 7 2.1393 -0.6023 3.6908 22 6 1.8473 -0.1068 4.9335 23 1 1.1874 0.7421 5.0351 24 6 2.3995 -0.6955 6.0629 25 7 3.2034 -1.7303 5.9392 26 14 2.0007 -0.0200 7.7582 27 1 1.0798 1.1373 7.6257 28 1 1.3521 -1.0786 8.5728 29 1 3.2537 0.4187 8.4235 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 3.1295 -0.7427 -1.2384 34 1 1.6957 -0.1934 -2.1399 35 1 1.9382 -2.7017 -2.0986 36 1 0.4147 -2.1369 -1.3687 37 1 1.9751 -4.8476 -1.8771 38 1 3.5321 -3.9850 -1.8766 39 1 4.5154 -5.7624 -0.4538 40 1 2.9581 -6.6244 -0.4546 41 1 6.1694 -6.9332 -2.1902 42 1 3.3071 -7.1504 -6.2590 43 1 3.8720 -8.7971 -5.8885 44 1 2.2526 -8.2735 -5.3674 45 1 1.9383 -2.7018 2.0983 46 1 0.4147 -2.1348 1.3672 47 1 1.8666 1.0631 2.4454 48 1 0.4697 -0.0345 2.5556 49 1 2.7317 -1.3650 3.5997 50 1 3.5890 -2.1420 6.7283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133114169.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:24 Heat of formation + Delta-G solvation = 76.875099 kcal Electronic energy + Delta-G solvation = -29157.702830 eV Core-core repulsion = 25222.708496 eV Total energy + Delta-G solvation = -3934.994334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.78368 -40.30739 -38.14638 -35.08161 -34.89380 -33.46977 -33.16372 -31.99942 -31.64660 -29.81155 -28.25367 -27.49084 -25.93352 -24.90067 -23.92855 -23.08635 -22.57913 -21.16028 -20.88560 -19.42194 -18.09416 -17.63562 -17.15354 -17.06176 -16.76442 -15.74413 -15.64039 -15.10975 -14.93305 -14.87868 -14.36742 -14.16780 -13.89514 -13.67001 -13.49869 -13.35575 -13.12653 -12.95005 -12.86286 -12.67154 -12.40049 -12.28417 -11.82392 -11.77214 -11.60178 -11.22940 -11.10369 -11.02703 -11.01202 -10.86362 -10.76935 -10.57693 -10.46115 -10.23347 -10.13149 -9.89458 -9.61552 -9.51302 -9.31213 -8.80679 -8.36490 -6.83594 -5.67382 -2.96892 1.54886 2.05413 2.18248 2.82276 3.15266 3.48612 3.53451 3.56301 3.81400 4.38334 4.58807 4.62752 4.63439 4.68151 4.74638 4.84969 4.87868 4.94224 4.98550 5.10206 5.13551 5.23797 5.31111 5.35171 5.48854 5.59880 5.61186 5.65827 5.70421 5.74618 5.84937 5.86597 5.93883 5.95991 6.00348 6.05476 6.10571 6.21605 6.36364 6.38915 6.41464 6.42574 6.64124 6.73008 6.83141 6.94693 7.59837 7.77273 8.07818 8.38376 8.50438 9.61402 10.19963 10.54085 11.54991 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002381 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.428237 B =11755.049493 C =13232.862068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.611 5.611 7 C 0.510 3.490 8 O -0.530 6.530 9 C -0.131 4.131 10 C -0.016 4.016 11 C 0.009 3.991 12 C -0.021 4.021 13 N -0.293 5.293 14 N -0.163 5.163 15 C 0.109 3.891 16 N -0.288 5.288 17 C 0.120 3.880 18 C -0.102 4.102 19 H 0.073 0.927 20 C 0.160 3.840 21 N -0.733 5.733 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.199 0.801 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.020 0.980 48 H 0.022 0.978 49 H 0.385 0.615 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 -7.497 -27.149 28.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.345 5.345 7 C 0.298 3.702 8 O -0.407 6.407 9 C -0.172 4.172 10 C -0.055 4.055 11 C -0.154 4.154 12 C -0.203 4.203 13 N -0.134 5.134 14 N -0.064 5.064 15 C -0.031 4.031 16 N -0.130 5.130 17 C -0.002 4.002 18 C -0.121 4.121 19 H 0.091 0.909 20 C 0.032 3.968 21 N -0.378 5.378 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.215 0.785 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.084 0.916 47 H 0.037 0.963 48 H 0.040 0.960 49 H 0.219 0.781 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.098 -8.173 -27.690 28.947 hybrid contribution 0.395 0.504 1.553 1.680 sum -1.703 -7.670 -26.136 27.292 Atomic orbital electron populations 1.21986 0.95276 1.01986 1.01735 1.21068 0.95982 0.99342 0.93982 0.90922 1.21941 1.01149 0.95190 0.98439 1.21746 1.00315 0.93685 0.85985 1.48170 1.57566 1.21159 1.07595 1.20572 0.77585 0.80859 0.91230 1.90775 1.53299 1.63138 1.33447 1.21612 1.02360 0.97054 0.96126 1.19673 1.02427 0.94263 0.89169 1.23259 0.90749 1.03997 0.97366 1.24724 1.00078 1.02717 0.92760 1.74044 1.02055 1.20675 1.16644 1.47897 1.02144 1.41442 1.14892 1.22087 1.00599 1.01309 0.79085 1.73991 1.26141 1.14393 0.98512 1.21723 0.99778 0.92876 0.85803 1.21679 1.00840 0.94547 0.95068 0.90871 1.20680 0.95960 0.94687 0.85433 1.42427 1.56987 1.37557 1.00786 1.19242 1.23211 1.10895 0.83796 0.91225 1.24758 1.00113 0.98347 0.97793 1.69682 1.35573 1.24120 1.28358 0.86144 0.77363 0.77935 0.84906 1.20633 1.21898 1.21949 0.91801 0.93220 0.92422 0.91521 0.90993 0.90241 0.91193 0.88658 0.89095 0.88520 0.89074 0.78461 0.89362 0.88067 0.87999 0.87918 0.91555 0.96256 0.95986 0.78095 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.11 37.16 0.30 -1.42 16 2 C -0.08 -1.03 2.71 -90.58 -0.25 -1.28 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.27 5.63 -26.61 -0.15 -1.42 16 5 C 0.11 1.04 5.87 -3.72 -0.02 1.02 16 6 N -0.61 -8.41 2.97 -172.78 -0.51 -8.93 16 7 C 0.51 7.50 7.70 -10.99 -0.08 7.42 16 8 O -0.53 -10.27 15.39 5.56 0.09 -10.18 16 9 C -0.13 -1.37 4.02 -27.88 -0.11 -1.49 16 10 C -0.02 -0.17 5.10 -27.88 -0.14 -0.31 16 11 C 0.01 0.10 6.61 -82.25 -0.54 -0.45 16 12 C -0.02 -0.20 12.15 -17.21 -0.21 -0.41 16 13 N -0.29 -3.13 12.05 30.67 0.37 -2.76 16 14 N -0.16 -1.57 4.35 -16.64 -0.07 -1.64 16 15 C 0.11 0.48 11.57 59.84 0.69 1.18 16 16 N -0.29 -3.16 12.04 33.71 0.41 -2.76 16 17 C 0.12 2.01 5.05 -3.72 -0.02 2.00 16 18 C -0.10 -1.66 2.15 -90.50 -0.19 -1.85 16 19 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 20 C 0.16 3.23 5.19 -4.04 -0.02 3.21 16 21 N -0.73 -19.01 5.38 -59.91 -0.32 -19.33 16 22 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 23 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -29.13 13.06 55.49 0.72 -28.40 16 26 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.66 4.98 -51.93 -0.26 0.40 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.62 5.93 -51.92 -0.31 0.31 16 36 H 0.07 0.64 6.70 -51.93 -0.35 0.29 16 37 H 0.10 0.91 7.94 -51.93 -0.41 0.49 16 38 H 0.09 0.83 7.69 -51.93 -0.40 0.43 16 39 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 41 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 2.18 6.21 -51.93 -0.32 1.86 16 46 H 0.07 1.09 6.69 -51.93 -0.35 0.74 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.02 0.44 6.72 -51.93 -0.35 0.10 16 49 H 0.38 10.71 6.89 -40.82 -0.28 10.42 16 50 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -36.68 393.48 -7.39 -44.07 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.98 Total: 7.40 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.00 Total: -1.35 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: 0.59 Total: -63.82 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.68 -7.39 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133114169.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.946 kcal (2) G-P(sol) polarization free energy of solvation -36.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds