Wall clock time and date at job start Wed Apr 1 2020 00:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.44559 * 2 1 4 4 C 1.53040 * 109.45888 * 240.03598 * 2 1 3 5 5 C 1.53188 * 109.31221 * 301.34418 * 4 2 1 6 6 N 1.46921 * 108.77702 * 305.36511 * 5 4 2 7 7 C 1.34778 * 120.62991 * 233.58921 * 6 5 4 8 8 O 1.21282 * 119.99956 * 180.02562 * 7 6 5 9 9 C 1.50693 * 120.00222 * 0.02562 * 7 6 5 10 10 C 1.53007 * 109.47265 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47074 * 179.97438 * 10 9 7 12 12 C 1.39674 * 127.05061 * 124.70840 * 11 10 9 13 13 N 1.31379 * 105.90189 * 179.83739 * 12 11 10 14 14 N 1.28605 * 108.71619 * 0.42888 * 13 12 11 15 15 C 1.46495 * 124.61730 * 179.71795 * 14 13 12 16 16 N 1.28600 * 110.75777 * 359.71851 * 14 13 12 17 17 C 1.46923 * 118.73736 * 53.60751 * 6 5 4 18 18 C 1.53041 * 109.45902 * 119.96895 * 2 1 3 19 19 H 1.09001 * 109.51934 * 178.62684 * 18 2 1 20 20 C 1.53000 * 109.49533 * 298.70150 * 18 2 1 21 21 N 1.46499 * 109.46840 * 184.83838 * 20 18 2 22 22 C 1.36936 * 120.00002 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00140 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00367 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99972 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00444 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46864 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47259 * 119.99588 * 26 24 22 29 29 H 1.48495 * 109.47205 * 239.99955 * 26 24 22 30 30 H 1.08996 * 109.47019 * 300.03089 * 1 2 3 31 31 H 1.08997 * 109.47177 * 60.03452 * 1 2 3 32 32 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.49735 * 181.39075 * 4 2 1 34 34 H 1.09004 * 109.49932 * 61.29619 * 4 2 1 35 35 H 1.09008 * 109.58479 * 185.57747 * 5 4 2 36 36 H 1.08996 * 109.70643 * 65.22835 * 5 4 2 37 37 H 1.09004 * 109.47016 * 299.99606 * 9 7 6 38 38 H 1.09000 * 109.47345 * 60.00017 * 9 7 6 39 39 H 1.09004 * 109.46622 * 299.99651 * 10 9 7 40 40 H 1.09000 * 109.47085 * 59.99662 * 10 9 7 41 41 H 1.08001 * 127.05109 * 0.02562 * 12 11 10 42 42 H 1.08999 * 109.47106 * 269.99964 * 15 14 13 43 43 H 1.08993 * 109.47372 * 29.99759 * 15 14 13 44 44 H 1.09003 * 109.46976 * 150.00413 * 15 14 13 45 45 H 1.09006 * 109.58550 * 186.60523 * 17 6 5 46 46 H 1.08996 * 109.58373 * 66.18439 * 17 6 5 47 47 H 1.09002 * 109.47398 * 304.84165 * 20 18 2 48 48 H 1.09001 * 109.47194 * 64.84345 * 20 18 2 49 49 H 0.97000 * 120.00420 * 0.02562 * 21 20 18 50 50 H 0.96996 * 120.00586 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 1.4995 -2.1541 -1.2643 6 7 1.8625 -2.8088 -0.0001 7 6 2.5156 -3.9878 -0.0002 8 8 2.8093 -4.5184 1.0501 9 6 2.8811 -4.6467 -1.3053 10 6 3.6094 -5.9629 -1.0257 11 6 3.9743 -6.6221 -2.3309 12 6 5.2460 -7.0275 -2.7423 13 7 5.0881 -7.5508 -3.9370 14 7 3.8450 -7.4776 -4.2585 15 6 3.2833 -7.9552 -5.5243 16 7 3.1624 -6.9281 -3.3173 17 6 1.4996 -2.1541 1.2641 18 6 2.0398 -0.7208 1.2501 19 1 3.1296 -0.7428 1.2388 20 6 1.5569 0.0194 2.4990 21 7 2.1393 -0.6023 3.6908 22 6 1.8473 -0.1068 4.9335 23 1 1.1874 0.7421 5.0351 24 6 2.3995 -0.6955 6.0629 25 7 3.2034 -1.7303 5.9392 26 14 2.0007 -0.0200 7.7582 27 1 1.0798 1.1373 7.6257 28 1 1.3521 -1.0786 8.5728 29 1 3.2537 0.4187 8.4235 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 3.1295 -0.7427 -1.2384 34 1 1.6957 -0.1934 -2.1399 35 1 1.9382 -2.7017 -2.0986 36 1 0.4147 -2.1369 -1.3687 37 1 1.9751 -4.8476 -1.8771 38 1 3.5321 -3.9850 -1.8766 39 1 4.5154 -5.7624 -0.4538 40 1 2.9581 -6.6244 -0.4546 41 1 6.1694 -6.9332 -2.1902 42 1 3.3071 -7.1504 -6.2590 43 1 3.8720 -8.7971 -5.8885 44 1 2.2526 -8.2735 -5.3674 45 1 1.9383 -2.7018 2.0983 46 1 0.4147 -2.1348 1.3672 47 1 1.8666 1.0631 2.4454 48 1 0.4697 -0.0345 2.5556 49 1 2.7317 -1.3650 3.5997 50 1 3.5890 -2.1420 6.7283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133114169.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:23 Heat of formation + Delta-G solvation = 50.969490 kcal Electronic energy + Delta-G solvation = -29158.826182 eV Core-core repulsion = 25222.708496 eV Total energy + Delta-G solvation = -3936.117685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.50922 -41.45838 -39.35928 -36.61336 -35.87156 -34.85628 -33.87300 -33.46884 -32.64892 -31.42324 -29.01475 -28.53167 -27.26654 -26.09793 -24.96868 -24.76803 -23.27928 -22.54326 -21.72973 -20.60640 -19.34945 -18.89143 -18.40984 -17.90172 -17.75298 -16.92737 -16.74557 -16.68881 -16.10941 -15.67614 -15.63586 -15.39312 -15.12219 -15.03542 -14.50487 -14.45109 -14.23433 -13.99176 -13.79978 -13.72161 -13.51960 -13.22212 -13.03640 -12.88208 -12.77709 -12.62466 -12.61123 -12.40186 -12.09297 -11.98783 -11.92728 -11.89912 -11.79257 -11.69172 -11.33665 -11.23626 -11.18280 -10.93375 -10.72748 -10.05167 -9.52676 -8.99489 -7.93911 -5.24181 0.81130 1.40608 1.45258 1.47377 1.53478 1.57406 1.67526 2.06148 2.55644 3.13082 3.38861 3.51634 3.72768 3.77139 3.87091 3.89094 4.11375 4.14781 4.16091 4.26351 4.32101 4.34309 4.37574 4.40557 4.49122 4.54582 4.59486 4.59959 4.66021 4.76359 4.81262 4.82980 4.87699 4.95323 5.02625 5.04739 5.12762 5.16603 5.21223 5.28539 5.31267 5.32880 5.43610 5.49442 5.58381 5.63452 5.79338 6.26975 6.49834 7.24110 7.32211 7.33915 8.09283 8.31251 9.29777 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002381 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.428237 B =11755.049493 C =13232.862068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.123 4.123 5 C 0.099 3.901 6 N -0.609 5.609 7 C 0.502 3.498 8 O -0.589 6.589 9 C -0.114 4.114 10 C -0.010 4.010 11 C -0.002 4.002 12 C -0.028 4.028 13 N -0.309 5.309 14 N -0.160 5.160 15 C 0.095 3.905 16 N -0.299 5.299 17 C 0.130 3.870 18 C -0.089 4.089 19 H 0.050 0.950 20 C 0.159 3.841 21 N -0.748 5.748 22 C -0.244 4.244 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.262 1.262 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.218 0.782 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.022 0.978 48 H 0.029 0.971 49 H 0.370 0.630 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.824 -6.311 -30.361 31.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.161 4.161 5 C -0.022 4.022 6 N -0.341 5.341 7 C 0.292 3.708 8 O -0.470 6.470 9 C -0.154 4.154 10 C -0.050 4.050 11 C -0.164 4.164 12 C -0.209 4.209 13 N -0.151 5.151 14 N -0.063 5.063 15 C -0.043 4.043 16 N -0.143 5.143 17 C 0.006 3.994 18 C -0.109 4.109 19 H 0.069 0.931 20 C 0.032 3.968 21 N -0.390 5.390 22 C -0.376 4.376 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.622 5.622 26 Si 0.805 3.195 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.220 1.220 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.235 0.765 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.040 0.960 48 H 0.047 0.953 49 H 0.202 0.798 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.319 -6.930 -30.975 31.914 hybrid contribution 0.709 0.135 2.445 2.549 sum -2.609 -6.795 -28.530 29.444 Atomic orbital electron populations 1.21955 0.94136 1.02075 1.02435 1.21066 0.96833 0.99275 0.92718 0.90358 1.21941 1.00864 0.94972 0.98296 1.22126 1.01727 0.93813 0.84512 1.48264 1.56909 1.20946 1.07971 1.21397 0.76620 0.80741 0.92025 1.90754 1.55626 1.64709 1.35867 1.21555 1.03458 0.96747 0.93619 1.19531 1.01960 0.94214 0.89312 1.23150 0.91174 1.04783 0.97247 1.25105 1.00723 1.02295 0.92769 1.74037 1.02783 1.21235 1.17022 1.48423 1.01827 1.40428 1.15577 1.22545 1.01489 1.02571 0.77677 1.73939 1.26536 1.14826 0.98987 1.21325 0.99287 0.92700 0.86049 1.21532 0.99341 0.94359 0.95664 0.93144 1.20874 0.95932 0.94789 0.85165 1.42688 1.57002 1.37351 1.01990 1.19702 1.22292 1.10544 0.85014 0.90326 1.25665 1.00656 0.99038 1.01945 1.69872 1.37365 1.25952 1.29054 0.85026 0.77177 0.77577 0.79699 1.18637 1.22156 1.22027 0.93500 0.90145 0.92611 0.92056 0.87234 0.87250 0.89473 0.86827 0.86754 0.88947 0.90754 0.76534 0.87497 0.86563 0.86631 0.93339 0.91305 0.95963 0.95307 0.79799 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.11 71.98 0.58 -2.34 16 2 C -0.08 -1.77 2.71 -10.77 -0.03 -1.80 16 3 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.12 -1.96 5.63 30.67 0.17 -1.78 16 5 C 0.10 1.62 5.87 86.36 0.51 2.13 16 6 N -0.61 -16.48 2.97 -818.95 -2.43 -18.92 16 7 C 0.50 15.01 7.70 87.65 0.67 15.68 16 8 O -0.59 -24.43 15.39 -3.04 -0.05 -24.47 16 9 C -0.11 -2.23 4.02 29.85 0.12 -2.11 16 10 C -0.01 -0.22 5.10 29.85 0.15 -0.07 16 11 C 0.00 -0.04 6.61 42.98 0.28 0.25 16 12 C -0.03 -0.52 12.15 85.11 1.03 0.51 16 13 N -0.31 -6.17 12.05 -56.87 -0.69 -6.85 16 14 N -0.16 -2.79 4.35 -206.57 -0.90 -3.69 16 15 C 0.10 0.62 11.57 127.77 1.48 2.10 16 16 N -0.30 -6.09 12.04 -47.25 -0.57 -6.66 16 17 C 0.13 4.53 5.05 86.36 0.44 4.97 16 18 C -0.09 -2.95 2.15 -10.72 -0.02 -2.97 16 19 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 20 C 0.16 6.52 5.19 86.38 0.45 6.97 16 21 N -0.75 -40.38 5.38 -343.45 -1.85 -42.23 16 22 C -0.24 -14.25 9.99 84.03 0.84 -13.41 16 23 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 24 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 25 N -0.97 -63.44 13.06 21.65 0.28 -63.16 16 26 Si 0.98 48.16 29.55 68.60 2.03 50.19 16 27 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 28 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 29 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 30 H 0.05 1.08 6.57 -2.39 -0.02 1.06 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.12 4.98 -2.39 -0.01 1.11 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 1.20 5.93 -2.38 -0.01 1.18 16 36 H 0.09 1.20 6.70 -2.39 -0.02 1.19 16 37 H 0.11 1.86 7.94 -2.38 -0.02 1.84 16 38 H 0.11 1.75 7.69 -2.39 -0.02 1.73 16 39 H 0.09 2.03 8.09 -2.38 -0.02 2.01 16 40 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 41 H 0.22 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.05 2.24 6.21 -2.38 -0.01 2.23 16 46 H 0.07 2.32 6.69 -2.39 -0.02 2.31 16 47 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.03 1.16 6.72 -2.39 -0.02 1.15 16 49 H 0.37 21.96 6.89 -92.71 -0.64 21.32 16 50 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -84.34 393.48 3.28 -81.05 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.31 Total: 31.07 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 7.15 Total: 3.67 kcal Atomic # 7 Polarization: -135.36 SS G_CDS: -6.15 Total: -141.51 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -84.34 3.28 -81.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133114169.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.023 kcal (2) G-P(sol) polarization free energy of solvation -84.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds