Wall clock time and date at job start Wed Apr 1 2020 00:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53187 * 109.31314 * 58.64645 * 4 2 1 6 6 N 1.46921 * 108.77794 * 54.63631 * 5 4 2 7 7 C 1.34775 * 120.63610 * 126.41490 * 6 5 4 8 8 O 1.21279 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99525 * 359.97365 * 7 6 5 10 10 C 1.52998 * 109.47068 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47291 * 180.02562 * 10 9 7 12 12 C 1.39680 * 127.05024 * 124.70837 * 11 10 9 13 13 N 1.31385 * 105.89535 * 179.84441 * 12 11 10 14 14 N 1.28592 * 108.72076 * 0.42545 * 13 12 11 15 15 C 1.46506 * 124.61986 * 179.71882 * 14 13 12 16 16 N 1.28599 * 110.76313 * 359.72182 * 14 13 12 17 17 C 1.46931 * 118.73731 * 306.38846 * 6 5 4 18 18 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 19 19 H 1.08994 * 109.49602 * 181.37331 * 18 2 1 20 20 C 1.53005 * 109.49407 * 61.31095 * 18 2 1 21 21 N 1.46497 * 109.46686 * 174.99639 * 20 18 2 22 22 C 1.36941 * 119.99619 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00239 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99827 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99944 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99869 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47153 * 60.00282 * 26 24 22 28 28 H 1.48502 * 109.47009 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46997 * 299.99927 * 26 24 22 30 30 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 32 32 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 33 33 H 1.08992 * 109.49694 * 178.60260 * 4 2 1 34 34 H 1.09007 * 109.49236 * 298.69458 * 4 2 1 35 35 H 1.09007 * 109.58834 * 294.84955 * 5 4 2 36 36 H 1.09001 * 109.58662 * 174.42524 * 5 4 2 37 37 H 1.09002 * 109.47351 * 300.00520 * 9 7 6 38 38 H 1.09002 * 109.46897 * 60.00389 * 9 7 6 39 39 H 1.09002 * 109.47234 * 300.00316 * 10 9 7 40 40 H 1.08994 * 109.47036 * 60.00568 * 10 9 7 41 41 H 1.07992 * 127.05042 * 0.02562 * 12 11 10 42 42 H 1.09000 * 109.47275 * 270.00481 * 15 14 13 43 43 H 1.09000 * 109.46873 * 30.00719 * 15 14 13 44 44 H 1.08996 * 109.47139 * 150.00268 * 15 14 13 45 45 H 1.08997 * 109.58885 * 293.82300 * 17 6 5 46 46 H 1.09000 * 109.70405 * 173.46383 * 17 6 5 47 47 H 1.08996 * 109.47305 * 294.99975 * 20 18 2 48 48 H 1.09008 * 109.47037 * 55.00272 * 20 18 2 49 49 H 0.96997 * 120.00098 * 0.02562 * 21 20 18 50 50 H 0.97000 * 119.99925 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0002 8 8 2.8083 -4.5188 -1.0500 9 6 2.8798 -4.6471 1.3054 10 6 3.6088 -5.9628 1.0259 11 6 3.9734 -6.6222 2.3311 12 6 3.6419 -7.9153 2.7422 13 7 4.1688 -8.0592 3.9371 14 7 4.7663 -6.9670 4.2590 15 6 5.4687 -6.7444 5.5253 16 7 4.6632 -6.0966 3.3180 17 6 1.4992 -2.1542 -1.2642 18 6 2.0399 -0.7210 -1.2500 19 1 3.1295 -0.7427 -1.2384 20 6 1.5571 0.0193 -2.4990 21 7 2.1427 -0.6001 -3.6905 22 6 1.8523 -0.1034 -4.9332 23 1 1.1920 0.7451 -5.0348 24 6 2.4067 -0.6906 -6.0622 25 7 3.2110 -1.7250 -5.9384 26 14 2.0101 -0.0135 -7.7575 27 1 2.4465 1.4036 -7.8391 28 1 2.7218 -0.8113 -8.7881 29 1 0.5461 -0.0949 -7.9929 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 3.1292 -0.7431 1.2386 34 1 1.6954 -0.1934 2.1399 35 1 0.4139 -2.1344 1.3673 36 1 1.9373 -2.7018 2.0986 37 1 3.5308 -3.9855 1.8769 38 1 1.9736 -4.8477 1.8770 39 1 2.9581 -6.6245 0.4543 40 1 4.5150 -5.7618 0.4546 41 1 3.0722 -8.6477 2.1897 42 1 4.7736 -6.3377 6.2598 43 1 5.8697 -7.6903 5.8894 44 1 6.2854 -6.0398 5.3688 45 1 0.4143 -2.1345 -1.3674 46 1 1.9358 -2.7012 -2.0998 47 1 0.4702 -0.0368 -2.5573 48 1 1.8647 1.0636 -2.4441 49 1 2.7360 -1.3620 -3.5992 50 1 3.5987 -2.1351 -6.7273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133114172.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:48 Heat of formation + Delta-G solvation = 77.073999 kcal Electronic energy + Delta-G solvation = -29168.411544 eV Core-core repulsion = 25233.425835 eV Total energy + Delta-G solvation = -3934.985709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.78402 -40.30463 -38.14431 -35.07991 -34.88880 -33.46618 -33.16173 -31.99625 -31.64438 -29.80797 -28.25105 -27.48815 -25.93055 -24.89698 -23.92829 -23.07872 -22.57911 -21.15530 -20.88422 -19.42456 -18.09240 -17.61058 -17.18139 -17.05011 -16.75480 -15.77011 -15.61233 -15.11146 -14.93688 -14.86741 -14.45204 -14.02511 -13.92967 -13.65299 -13.47967 -13.39797 -13.14629 -12.98657 -12.80068 -12.66856 -12.37392 -12.28548 -11.85897 -11.76841 -11.58628 -11.20453 -11.12827 -11.01895 -11.00116 -10.85637 -10.74307 -10.57216 -10.46102 -10.26205 -10.12660 -9.92385 -9.60815 -9.50803 -9.31279 -8.79352 -8.36309 -6.83341 -5.66645 -2.96275 1.55183 2.05684 2.18041 2.82204 3.15483 3.49531 3.53382 3.55153 3.81560 4.38395 4.59539 4.63365 4.63986 4.68337 4.74632 4.85943 4.87846 4.94077 4.99262 5.10252 5.13242 5.24186 5.31368 5.35065 5.48222 5.60204 5.61593 5.65898 5.70823 5.75131 5.84424 5.87099 5.94875 5.96019 6.01187 6.05834 6.10166 6.21982 6.36812 6.39241 6.41833 6.42643 6.64346 6.73320 6.83535 6.95163 7.59996 7.76658 8.08017 8.38472 8.51190 9.61934 10.20528 10.54704 11.55595 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.002393 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.662464 B =11699.929499 C =13110.270365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.611 5.611 7 C 0.510 3.490 8 O -0.530 6.530 9 C -0.131 4.131 10 C -0.016 4.016 11 C 0.009 3.991 12 C -0.021 4.021 13 N -0.293 5.293 14 N -0.163 5.163 15 C 0.109 3.891 16 N -0.287 5.287 17 C 0.120 3.880 18 C -0.102 4.102 19 H 0.073 0.927 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.198 0.802 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.022 0.978 48 H 0.020 0.980 49 H 0.385 0.615 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 -7.059 27.113 28.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.345 5.345 7 C 0.298 3.702 8 O -0.407 6.407 9 C -0.172 4.172 10 C -0.055 4.055 11 C -0.154 4.154 12 C -0.204 4.204 13 N -0.134 5.134 14 N -0.063 5.063 15 C -0.031 4.031 16 N -0.129 5.129 17 C -0.002 4.002 18 C -0.121 4.121 19 H 0.091 0.909 20 C 0.033 3.967 21 N -0.377 5.377 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.215 0.785 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.084 0.916 46 H 0.121 0.879 47 H 0.040 0.960 48 H 0.037 0.963 49 H 0.219 0.781 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.038 -7.069 27.646 28.535 hybrid contribution -0.428 0.075 -1.552 1.612 sum -0.390 -6.994 26.094 27.018 Atomic orbital electron populations 1.21986 0.95284 1.01970 1.01732 1.21071 0.95967 0.99347 0.93991 0.90923 1.21943 1.01194 0.95179 0.98422 1.21751 1.00255 0.93733 0.85994 1.48170 1.57577 1.21143 1.07593 1.20572 0.77543 0.80903 0.91228 1.90774 1.53223 1.63211 1.33451 1.21613 1.02064 0.97353 0.96128 1.19670 1.01850 0.94841 0.89176 1.23265 1.00549 0.94202 0.97365 1.24709 1.04597 0.98272 0.92789 1.74034 1.11536 1.11231 1.16642 1.47900 1.37995 1.05545 1.14891 1.22095 0.97149 1.04808 0.79044 1.74009 1.19660 1.20765 0.98506 1.21718 0.99763 0.92884 0.85813 1.21682 1.00849 0.94546 0.95068 0.90876 1.20679 0.95930 0.94697 0.85442 1.42414 1.56857 1.37681 1.00792 1.19151 1.23338 1.10976 0.83830 0.91337 1.24756 1.00078 0.98325 0.97781 1.69664 1.35373 1.24121 1.28613 0.86290 0.77614 0.77971 0.84415 1.21369 1.21723 1.21322 0.92427 0.93221 0.91809 0.91492 0.90993 0.91213 0.90205 0.88559 0.89192 0.88623 0.88970 0.78506 0.89357 0.88064 0.87961 0.91558 0.87922 0.95997 0.96272 0.78092 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.11 37.16 0.30 -1.42 16 2 C -0.08 -1.04 2.71 -90.57 -0.25 -1.28 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.28 5.62 -26.61 -0.15 -1.43 16 5 C 0.11 1.04 5.87 -3.72 -0.02 1.02 16 6 N -0.61 -8.42 2.97 -172.77 -0.51 -8.93 16 7 C 0.51 7.50 7.70 -10.99 -0.08 7.42 16 8 O -0.53 -10.27 15.40 5.56 0.09 -10.18 16 9 C -0.13 -1.38 4.02 -27.88 -0.11 -1.49 16 10 C -0.02 -0.17 5.10 -27.88 -0.14 -0.31 16 11 C 0.01 0.10 6.61 -82.25 -0.54 -0.45 16 12 C -0.02 -0.21 12.15 -17.21 -0.21 -0.42 16 13 N -0.29 -3.11 12.05 30.67 0.37 -2.74 16 14 N -0.16 -1.57 4.35 -16.64 -0.07 -1.65 16 15 C 0.11 0.50 11.57 59.85 0.69 1.19 16 16 N -0.29 -3.20 12.04 33.72 0.41 -2.79 16 17 C 0.12 2.02 5.05 -3.71 -0.02 2.00 16 18 C -0.10 -1.67 2.15 -90.49 -0.19 -1.86 16 19 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 20 C 0.16 3.24 5.19 -4.04 -0.02 3.22 16 21 N -0.73 -19.07 5.38 -59.91 -0.32 -19.39 16 22 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.20 13.06 55.49 0.72 -28.48 16 26 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.80 6.58 -51.92 -0.34 0.45 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.07 0.63 6.69 -51.92 -0.35 0.28 16 36 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 37 H 0.10 0.95 7.69 -51.93 -0.40 0.55 16 38 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 39 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.09 1.12 8.10 -51.93 -0.42 0.69 16 41 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 1.08 6.69 -51.93 -0.35 0.74 16 46 H 0.10 2.18 6.22 -51.93 -0.32 1.86 16 47 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 48 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 49 H 0.38 10.75 6.90 -40.82 -0.28 10.47 16 50 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -36.73 393.49 -7.39 -44.12 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -7.98 Total: 7.53 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.00 Total: -1.39 kcal Atomic # 7 Polarization: -64.57 SS G_CDS: 0.59 Total: -63.98 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.73 -7.39 -44.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133114172.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.194 kcal (2) G-P(sol) polarization free energy of solvation -36.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds