Wall clock time and date at job start Wed Apr 1 2020 00:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53187 * 109.31314 * 58.64645 * 4 2 1 6 6 N 1.46921 * 108.77794 * 54.63631 * 5 4 2 7 7 C 1.34775 * 120.63610 * 126.41490 * 6 5 4 8 8 O 1.21279 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99525 * 359.97365 * 7 6 5 10 10 C 1.52998 * 109.47068 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47291 * 180.02562 * 10 9 7 12 12 C 1.39680 * 127.05024 * 124.70837 * 11 10 9 13 13 N 1.31385 * 105.89535 * 179.84441 * 12 11 10 14 14 N 1.28592 * 108.72076 * 0.42545 * 13 12 11 15 15 C 1.46506 * 124.61986 * 179.71882 * 14 13 12 16 16 N 1.28599 * 110.76313 * 359.72182 * 14 13 12 17 17 C 1.46931 * 118.73731 * 306.38846 * 6 5 4 18 18 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 19 19 H 1.08994 * 109.49602 * 181.37331 * 18 2 1 20 20 C 1.53005 * 109.49407 * 61.31095 * 18 2 1 21 21 N 1.46497 * 109.46686 * 174.99639 * 20 18 2 22 22 C 1.36941 * 119.99619 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00239 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99827 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99944 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99869 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47153 * 60.00282 * 26 24 22 28 28 H 1.48502 * 109.47009 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46997 * 299.99927 * 26 24 22 30 30 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 32 32 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 33 33 H 1.08992 * 109.49694 * 178.60260 * 4 2 1 34 34 H 1.09007 * 109.49236 * 298.69458 * 4 2 1 35 35 H 1.09007 * 109.58834 * 294.84955 * 5 4 2 36 36 H 1.09001 * 109.58662 * 174.42524 * 5 4 2 37 37 H 1.09002 * 109.47351 * 300.00520 * 9 7 6 38 38 H 1.09002 * 109.46897 * 60.00389 * 9 7 6 39 39 H 1.09002 * 109.47234 * 300.00316 * 10 9 7 40 40 H 1.08994 * 109.47036 * 60.00568 * 10 9 7 41 41 H 1.07992 * 127.05042 * 0.02562 * 12 11 10 42 42 H 1.09000 * 109.47275 * 270.00481 * 15 14 13 43 43 H 1.09000 * 109.46873 * 30.00719 * 15 14 13 44 44 H 1.08996 * 109.47139 * 150.00268 * 15 14 13 45 45 H 1.08997 * 109.58885 * 293.82300 * 17 6 5 46 46 H 1.09000 * 109.70405 * 173.46383 * 17 6 5 47 47 H 1.08996 * 109.47305 * 294.99975 * 20 18 2 48 48 H 1.09008 * 109.47037 * 55.00272 * 20 18 2 49 49 H 0.96997 * 120.00098 * 0.02562 * 21 20 18 50 50 H 0.97000 * 119.99925 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0002 8 8 2.8083 -4.5188 -1.0500 9 6 2.8798 -4.6471 1.3054 10 6 3.6088 -5.9628 1.0259 11 6 3.9734 -6.6222 2.3311 12 6 3.6419 -7.9153 2.7422 13 7 4.1688 -8.0592 3.9371 14 7 4.7663 -6.9670 4.2590 15 6 5.4687 -6.7444 5.5253 16 7 4.6632 -6.0966 3.3180 17 6 1.4992 -2.1542 -1.2642 18 6 2.0399 -0.7210 -1.2500 19 1 3.1295 -0.7427 -1.2384 20 6 1.5571 0.0193 -2.4990 21 7 2.1427 -0.6001 -3.6905 22 6 1.8523 -0.1034 -4.9332 23 1 1.1920 0.7451 -5.0348 24 6 2.4067 -0.6906 -6.0622 25 7 3.2110 -1.7250 -5.9384 26 14 2.0101 -0.0135 -7.7575 27 1 2.4465 1.4036 -7.8391 28 1 2.7218 -0.8113 -8.7881 29 1 0.5461 -0.0949 -7.9929 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 3.1292 -0.7431 1.2386 34 1 1.6954 -0.1934 2.1399 35 1 0.4139 -2.1344 1.3673 36 1 1.9373 -2.7018 2.0986 37 1 3.5308 -3.9855 1.8769 38 1 1.9736 -4.8477 1.8770 39 1 2.9581 -6.6245 0.4543 40 1 4.5150 -5.7618 0.4546 41 1 3.0722 -8.6477 2.1897 42 1 4.7736 -6.3377 6.2598 43 1 5.8697 -7.6903 5.8894 44 1 6.2854 -6.0398 5.3688 45 1 0.4143 -2.1345 -1.3674 46 1 1.9358 -2.7012 -2.0998 47 1 0.4702 -0.0368 -2.5573 48 1 1.8647 1.0636 -2.4441 49 1 2.7360 -1.3620 -3.5992 50 1 3.5987 -2.1351 -6.7273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133114172.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:27 Heat of formation + Delta-G solvation = 51.070406 kcal Electronic energy + Delta-G solvation = -29169.539144 eV Core-core repulsion = 25233.425835 eV Total energy + Delta-G solvation = -3936.113309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 15.34 seconds Orbital eigenvalues (eV) -44.50758 -41.45802 -39.36078 -36.61273 -35.87001 -34.85636 -33.86938 -33.47066 -32.64947 -31.42497 -29.01454 -28.53185 -27.26575 -26.09693 -24.96889 -24.76610 -23.27644 -22.54628 -21.72851 -20.61301 -19.34637 -18.88980 -18.39768 -17.91176 -17.75393 -16.93338 -16.75493 -16.66342 -16.12652 -15.68331 -15.64001 -15.36606 -15.23112 -14.85191 -14.58728 -14.44943 -14.24871 -14.01245 -13.77346 -13.71524 -13.51280 -13.22247 -13.03595 -12.83106 -12.78125 -12.65286 -12.56331 -12.41632 -12.15455 -12.04368 -11.89871 -11.89504 -11.78570 -11.69773 -11.33882 -11.23541 -11.18518 -10.91196 -10.72765 -10.05168 -9.52590 -8.99780 -7.93630 -5.24144 0.81542 1.41281 1.44977 1.49506 1.53502 1.55737 1.67220 2.06417 2.55900 3.13656 3.38764 3.51584 3.72499 3.77754 3.86698 3.88916 4.10439 4.13994 4.17337 4.26242 4.31782 4.34009 4.37554 4.41706 4.48522 4.54614 4.59147 4.59877 4.65432 4.76318 4.80981 4.83209 4.87573 4.95042 5.02235 5.05472 5.12379 5.17676 5.21045 5.28227 5.31387 5.32769 5.43393 5.48793 5.58331 5.63451 5.79309 6.26795 6.49885 7.24157 7.32070 7.34451 8.09152 8.31286 9.29670 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.002393 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.662464 B =11699.929499 C =13110.270365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.077 0.923 4 C -0.123 4.123 5 C 0.099 3.901 6 N -0.609 5.609 7 C 0.502 3.498 8 O -0.589 6.589 9 C -0.114 4.114 10 C -0.010 4.010 11 C -0.002 4.002 12 C -0.026 4.026 13 N -0.309 5.309 14 N -0.161 5.161 15 C 0.095 3.905 16 N -0.301 5.301 17 C 0.130 3.870 18 C -0.090 4.090 19 H 0.048 0.952 20 C 0.159 3.841 21 N -0.748 5.748 22 C -0.246 4.246 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.978 3.022 27 H -0.275 1.275 28 H -0.297 1.297 29 H -0.275 1.275 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.220 0.780 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.030 0.970 48 H 0.022 0.978 49 H 0.370 0.630 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 -5.991 30.259 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.161 4.161 5 C -0.022 4.022 6 N -0.341 5.341 7 C 0.292 3.708 8 O -0.470 6.470 9 C -0.154 4.154 10 C -0.050 4.050 11 C -0.164 4.164 12 C -0.207 4.207 13 N -0.151 5.151 14 N -0.063 5.063 15 C -0.043 4.043 16 N -0.145 5.145 17 C 0.007 3.993 18 C -0.109 4.109 19 H 0.066 0.934 20 C 0.033 3.967 21 N -0.390 5.390 22 C -0.378 4.378 23 H 0.097 0.903 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.806 3.194 27 H -0.201 1.201 28 H -0.223 1.223 29 H -0.201 1.201 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.137 0.863 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.237 0.763 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.048 0.952 48 H 0.040 0.960 49 H 0.202 0.798 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.362 -5.942 30.866 31.462 hybrid contribution 0.003 -0.221 -2.426 2.436 sum -1.359 -6.164 28.441 29.133 Atomic orbital electron populations 1.21953 0.94018 1.02141 1.02452 1.21067 0.96916 0.99222 0.92683 0.90442 1.21944 1.00761 0.95103 0.98329 1.22133 1.01769 0.93749 0.84508 1.48266 1.56934 1.20922 1.07967 1.21398 0.76554 0.80808 0.92026 1.90753 1.55528 1.64803 1.35872 1.21556 1.03378 0.96841 0.93616 1.19534 1.00960 0.95214 0.89319 1.23167 1.01294 0.94734 0.97202 1.25120 1.04485 0.98407 0.92720 1.74029 1.12144 1.11830 1.17073 1.48412 1.37399 1.04920 1.15553 1.22540 0.97809 1.06234 0.77690 1.73957 1.19927 1.21547 0.99078 1.21322 0.99366 0.92613 0.86046 1.21536 0.99229 0.94476 0.95706 0.93370 1.20872 0.95939 0.94762 0.85155 1.42678 1.56885 1.37469 1.02016 1.19633 1.22472 1.10677 0.85036 0.90340 1.25675 1.00583 0.99001 1.01989 1.69864 1.37180 1.25976 1.29240 0.85155 0.77671 0.77467 0.79121 1.20112 1.22330 1.20143 0.92502 0.90123 0.93492 0.92285 0.87194 0.89268 0.87261 0.87252 0.86328 0.88519 0.91185 0.76305 0.87451 0.86532 0.86786 0.91123 0.93370 0.95223 0.96039 0.79835 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.11 71.98 0.58 -2.32 16 2 C -0.08 -1.79 2.71 -10.76 -0.03 -1.82 16 3 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.12 -2.01 5.62 30.67 0.17 -1.84 16 5 C 0.10 1.62 5.87 86.36 0.51 2.13 16 6 N -0.61 -16.50 2.97 -818.91 -2.43 -18.93 16 7 C 0.50 15.02 7.70 87.66 0.67 15.70 16 8 O -0.59 -24.44 15.40 -3.03 -0.05 -24.49 16 9 C -0.11 -2.24 4.02 29.85 0.12 -2.12 16 10 C -0.01 -0.22 5.10 29.85 0.15 -0.07 16 11 C 0.00 -0.04 6.61 42.98 0.28 0.24 16 12 C -0.03 -0.48 12.15 85.11 1.03 0.56 16 13 N -0.31 -6.10 12.05 -56.86 -0.69 -6.79 16 14 N -0.16 -2.83 4.35 -206.54 -0.90 -3.73 16 15 C 0.10 0.66 11.57 127.77 1.48 2.14 16 16 N -0.30 -6.28 12.04 -47.24 -0.57 -6.85 16 17 C 0.13 4.54 5.05 86.36 0.44 4.97 16 18 C -0.09 -3.00 2.15 -10.71 -0.02 -3.02 16 19 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 20 C 0.16 6.57 5.19 86.38 0.45 7.02 16 21 N -0.75 -40.60 5.38 -343.44 -1.85 -42.44 16 22 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 23 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 24 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 25 N -0.97 -63.65 13.06 21.65 0.28 -63.37 16 26 Si 0.98 48.18 29.55 68.60 2.03 50.21 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 29 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 30 H 0.06 1.12 4.98 -2.39 -0.01 1.11 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.08 6.58 -2.38 -0.02 1.06 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.09 1.20 6.69 -2.38 -0.02 1.18 16 36 H 0.11 1.21 5.93 -2.39 -0.01 1.19 16 37 H 0.11 1.91 7.69 -2.39 -0.02 1.89 16 38 H 0.12 1.69 7.94 -2.39 -0.02 1.67 16 39 H 0.10 2.02 8.09 -2.39 -0.02 2.00 16 40 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 41 H 0.22 2.65 8.06 -2.91 -0.02 2.63 16 42 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.07 2.36 6.69 -2.39 -0.02 2.35 16 46 H 0.05 2.23 6.22 -2.39 -0.01 2.22 16 47 H 0.03 1.20 6.73 -2.39 -0.02 1.18 16 48 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.37 22.07 6.90 -92.71 -0.64 21.43 16 50 H 0.25 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -84.70 393.49 3.28 -81.42 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.31 Total: 31.44 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 7.15 Total: 3.53 kcal Atomic # 7 Polarization: -135.96 SS G_CDS: -6.15 Total: -142.11 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -84.70 3.28 -81.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133114172.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.486 kcal (2) G-P(sol) polarization free energy of solvation -84.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.35 seconds