Wall clock time and date at job start Wed Apr 1 2020 00:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47267 * 2 1 4 4 N 1.46499 * 109.47080 * 120.00677 * 2 1 3 5 5 C 1.34818 * 126.59120 * 275.29201 * 4 2 1 6 6 C 1.36591 * 106.83833 * 180.13685 * 5 4 2 7 7 C 1.47521 * 125.77221 * 179.90015 * 6 5 4 8 8 O 1.21602 * 119.99718 * 353.18227 * 7 6 5 9 9 N 1.34777 * 120.00216 * 173.18605 * 7 6 5 10 10 C 1.46924 * 120.63016 * 353.68603 * 9 7 6 11 11 C 1.53191 * 108.77457 * 126.41598 * 10 9 7 12 12 C 1.53040 * 109.31629 * 54.63241 * 11 10 9 13 13 H 1.09003 * 109.45761 * 58.65600 * 12 11 10 14 14 C 1.52990 * 109.45308 * 178.62326 * 12 11 10 15 15 C 1.53048 * 109.53876 * 298.64106 * 12 11 10 16 16 H 1.08999 * 109.49210 * 301.40838 * 15 12 11 17 17 C 1.52997 * 109.52161 * 181.32955 * 15 12 11 18 18 N 1.46501 * 109.46727 * 175.14349 * 17 15 12 19 19 C 1.36939 * 119.99950 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99779 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00254 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00145 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00172 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46953 * 60.00760 * 23 21 19 25 25 H 1.48506 * 109.47066 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47597 * 300.00228 * 23 21 19 27 27 C 1.46927 * 120.62883 * 173.70974 * 9 7 6 28 28 N 1.34399 * 108.46144 * 359.62851 * 6 5 4 29 29 N 1.28765 * 109.52412 * 0.23144 * 28 6 5 30 30 H 1.09001 * 109.46761 * 299.99663 * 1 2 3 31 31 H 1.08996 * 109.46791 * 59.99649 * 1 2 3 32 32 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46761 * 240.00337 * 2 1 3 34 34 H 1.08996 * 109.46922 * 300.00411 * 3 2 1 35 35 H 1.09001 * 109.46955 * 60.00456 * 3 2 1 36 36 H 1.09001 * 109.46926 * 180.02562 * 3 2 1 37 37 H 1.08002 * 126.57654 * 359.97438 * 5 4 2 38 38 H 1.08994 * 109.58341 * 6.62892 * 10 9 7 39 39 H 1.08999 * 109.70393 * 246.26695 * 10 9 7 40 40 H 1.09003 * 109.49531 * 294.68638 * 11 10 9 41 41 H 1.08999 * 109.52842 * 174.60297 * 11 10 9 42 42 H 1.09002 * 109.47479 * 180.02562 * 14 12 11 43 43 H 1.09002 * 109.47423 * 300.06144 * 14 12 11 44 44 H 1.09002 * 109.47521 * 60.06339 * 14 12 11 45 45 H 1.08998 * 109.47209 * 295.13736 * 17 15 12 46 46 H 1.08997 * 109.47399 * 55.14462 * 17 15 12 47 47 H 0.96995 * 120.00339 * 359.97438 * 18 17 15 48 48 H 0.96992 * 120.00652 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.58739 * 113.79965 * 27 9 7 50 50 H 1.08998 * 109.58933 * 353.37848 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1922 -0.1529 2.4201 6 6 2.6637 -1.1492 3.2267 7 6 2.9995 -1.0147 4.6569 8 8 2.9817 0.0805 5.1851 9 7 3.3261 -2.1054 5.3780 10 6 3.2193 -3.4490 4.7932 11 6 4.5636 -4.1655 4.9548 12 6 4.9699 -4.1527 6.4302 13 1 4.1987 -4.6440 7.0235 14 6 6.2955 -4.8974 6.6002 15 6 5.1332 -2.7064 6.9037 16 1 5.8868 -2.2072 6.2946 17 6 5.5715 -2.6947 8.3695 18 7 5.8394 -1.3166 8.7880 19 6 6.2488 -1.0572 10.0687 20 1 6.3738 -1.8687 10.7704 21 6 6.5032 0.2485 10.4652 22 7 6.3504 1.2375 9.6102 23 14 7.0609 0.6023 12.2125 24 1 8.3377 -0.1083 12.4780 25 1 7.2642 2.0637 12.3809 26 1 6.0252 0.1328 13.1675 27 6 3.7953 -1.9735 6.7641 28 7 2.7645 -2.2745 2.4987 29 7 2.3900 -2.0395 1.2893 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6769 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.9984 0.8701 2.7069 38 1 2.9733 -3.3681 3.7344 39 1 2.4408 -4.0127 5.3072 40 1 5.3226 -3.6524 4.3641 41 1 4.4709 -5.1960 4.6119 42 1 6.5850 -4.8889 7.6510 43 1 6.1794 -5.9274 6.2631 44 1 7.0670 -4.4059 6.0074 45 1 4.7792 -3.1150 8.9890 46 1 6.4766 -3.2913 8.4829 47 1 5.7275 -0.5878 8.1577 48 1 6.5284 2.1499 9.8870 49 1 3.0642 -2.4156 7.4410 50 1 3.9293 -0.9192 7.0058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133200242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:12 Heat of formation + Delta-G solvation = 76.592159 kcal Electronic energy + Delta-G solvation = -29672.671272 eV Core-core repulsion = 25737.664669 eV Total energy + Delta-G solvation = -3935.006603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.49557 -39.84059 -37.76774 -36.89045 -34.85169 -33.58259 -31.91481 -31.74351 -31.01956 -29.60978 -28.12046 -27.94143 -25.78279 -24.35711 -24.01155 -23.03993 -22.33336 -21.14933 -21.05659 -20.11804 -19.19628 -17.61761 -16.94965 -16.44447 -16.26035 -15.87295 -15.23651 -15.03517 -14.76046 -14.74069 -14.16914 -14.05580 -13.88216 -13.73135 -13.44364 -13.24234 -13.03833 -12.98828 -12.90406 -12.68626 -12.39691 -12.32151 -12.15628 -11.95718 -11.71260 -11.62100 -11.42877 -11.02578 -10.88259 -10.71141 -10.66199 -10.60727 -10.37967 -10.12612 -10.02938 -9.94531 -9.58787 -9.45422 -9.40145 -8.76594 -8.32293 -6.79984 -5.64515 -2.93596 0.95365 1.60399 1.71566 3.14055 3.37200 3.51132 3.54902 3.56427 3.82065 4.02610 4.15127 4.34549 4.46896 4.67401 4.72092 4.83737 4.87036 4.93177 5.01992 5.03265 5.09430 5.11678 5.18857 5.32334 5.37320 5.46460 5.49414 5.54839 5.68572 5.78532 5.83405 5.87745 5.95757 6.08679 6.12934 6.14748 6.20025 6.29384 6.34121 6.39791 6.46250 6.60028 6.68580 6.83682 6.93397 7.01952 7.57733 7.79135 7.80182 8.33685 8.53582 9.64268 10.23401 10.57760 11.57907 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.002775 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.131999 B =10088.735433 C =11696.605790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.170 4.170 4 N -0.354 5.354 5 C 0.093 3.907 6 C -0.089 4.089 7 C 0.596 3.404 8 O -0.531 6.531 9 N -0.593 5.593 10 C 0.070 3.930 11 C -0.122 4.122 12 C -0.086 4.086 13 H 0.069 0.931 14 C -0.147 4.147 15 C -0.101 4.101 16 H 0.073 0.927 17 C 0.159 3.841 18 N -0.733 5.733 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C 0.121 3.879 28 N -0.205 5.205 29 N -0.071 5.071 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.203 0.797 38 H 0.137 0.863 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.018 0.982 46 H 0.027 0.973 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.066 0.934 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.230 -6.307 -23.535 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 C -0.229 4.229 4 N -0.141 5.141 5 C -0.063 4.063 6 C -0.228 4.228 7 C 0.381 3.619 8 O -0.406 6.406 9 N -0.324 5.324 10 C -0.054 4.054 11 C -0.160 4.160 12 C -0.105 4.105 13 H 0.088 0.912 14 C -0.204 4.204 15 C -0.120 4.120 16 H 0.092 0.908 17 C 0.031 3.969 18 N -0.377 5.377 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.001 4.001 28 N -0.078 5.078 29 N -0.049 5.049 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.220 0.780 38 H 0.153 0.847 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.065 -7.021 -23.890 27.669 hybrid contribution 0.199 1.371 1.230 1.853 sum -11.866 -5.649 -22.659 26.195 Atomic orbital electron populations 1.22265 0.92477 1.03832 1.03912 1.21651 0.95659 0.93496 0.84946 1.22281 1.02859 0.93235 1.04483 1.50702 1.44559 1.09709 1.09096 1.23280 0.97446 1.01199 0.84372 1.21570 1.13594 0.90426 0.97237 1.16848 0.77494 0.84446 0.83069 1.90869 1.53252 1.25741 1.70773 1.47925 1.64242 1.06114 1.14146 1.22731 0.97357 0.81987 1.03287 1.21896 0.97215 1.00250 0.96648 1.21124 0.97923 0.95729 0.95737 0.91223 1.21877 0.97004 0.99074 1.02478 1.21703 0.96856 0.94798 0.98654 0.90848 1.20728 0.97113 0.88751 0.90340 1.42417 1.81545 1.01924 1.11862 1.19163 1.37280 0.92140 0.88471 0.91329 1.24744 1.02688 0.95729 0.97839 1.69663 1.55404 0.98847 1.34003 0.86290 0.78467 0.76839 0.84706 1.21391 1.21765 1.21338 1.21775 0.94814 1.03766 0.79712 1.74129 1.12364 1.22695 0.98600 1.81975 1.18099 0.91994 1.12867 0.91357 0.89676 0.91230 0.86811 0.89268 0.90891 0.90967 0.78042 0.84653 0.92230 0.91719 0.91120 0.91779 0.93285 0.92862 0.96383 0.95516 0.78140 0.93513 0.91529 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 9.52 37.16 0.35 -0.28 16 2 C 0.14 0.71 3.96 -67.93 -0.27 0.44 16 3 C -0.17 -0.60 8.85 37.16 0.33 -0.27 16 4 N -0.35 -3.20 3.54 -54.56 -0.19 -3.40 16 5 C 0.09 0.98 10.41 -16.83 -0.18 0.81 16 6 C -0.09 -1.23 6.75 -83.55 -0.56 -1.79 16 7 C 0.60 10.09 7.68 -12.48 -0.10 9.99 16 8 O -0.53 -10.73 16.32 5.28 0.09 -10.64 16 9 N -0.59 -9.53 2.97 -174.01 -0.52 -10.05 16 10 C 0.07 0.92 6.32 -3.71 -0.02 0.90 16 11 C -0.12 -1.52 5.36 -26.61 -0.14 -1.67 16 12 C -0.09 -1.19 2.23 -90.58 -0.20 -1.39 16 13 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.15 -1.92 8.81 37.15 0.33 -1.59 16 15 C -0.10 -1.76 1.92 -90.50 -0.17 -1.93 16 16 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 17 C 0.16 3.30 5.41 -4.04 -0.02 3.28 16 18 N -0.73 -19.33 5.38 -59.91 -0.32 -19.65 16 19 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -29.30 13.06 55.49 0.72 -28.57 16 23 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C 0.12 2.19 5.50 -3.71 -0.02 2.16 16 28 N -0.21 -2.72 8.70 32.84 0.29 -2.43 16 29 N -0.07 -0.84 13.79 60.35 0.83 -0.01 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.07 0.26 7.23 -51.93 -0.38 -0.12 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.20 1.65 7.35 -52.49 -0.39 1.26 16 38 H 0.14 1.77 3.66 -121.51 -0.44 1.33 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.03 0.56 6.15 -51.93 -0.32 0.24 16 47 H 0.38 10.84 6.89 -40.82 -0.28 10.56 16 48 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 49 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.10 2.25 6.25 -51.93 -0.32 1.93 16 LS Contribution 394.92 15.07 5.95 5.95 Total: -1.00 -35.29 394.92 -7.44 -42.74 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.35 Total: 6.90 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.92 Total: 1.07 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: 0.81 Total: -64.11 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.29 -7.44 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133200242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.329 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds