Wall clock time and date at job start Wed Apr 1 2020 00:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47338 * 2 1 4 4 N 1.46494 * 109.46847 * 120.00450 * 2 1 3 5 5 C 1.34815 * 126.59355 * 274.99103 * 4 2 1 6 6 C 1.36592 * 106.84392 * 179.97438 * 5 4 2 7 7 C 1.47525 * 125.77382 * 180.02562 * 6 5 4 8 8 O 1.21593 * 119.99788 * 7.31083 * 7 6 5 9 9 N 1.34778 * 119.99936 * 187.31098 * 7 6 5 10 10 C 1.46924 * 120.63171 * 7.08337 * 9 7 6 11 11 C 1.53626 * 108.54349 * 126.36862 * 10 9 7 12 12 C 1.53040 * 109.24107 * 54.85546 * 11 10 9 13 13 H 1.09001 * 109.46066 * 178.48945 * 12 11 10 14 14 C 1.53000 * 109.44788 * 58.52673 * 12 11 10 15 15 C 1.53045 * 109.53786 * 298.51384 * 12 11 10 16 16 H 1.08994 * 109.49337 * 301.41105 * 15 12 11 17 17 C 1.53004 * 109.51850 * 181.33241 * 15 12 11 18 18 N 1.46504 * 109.46484 * 175.14395 * 17 15 12 19 19 C 1.36944 * 119.99843 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99586 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99730 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00390 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99783 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47327 * 59.99140 * 23 21 19 25 25 H 1.48497 * 109.47319 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46805 * 299.99922 * 23 21 19 27 27 C 1.46927 * 120.62691 * 187.36524 * 9 7 6 28 28 N 1.34406 * 108.45648 * 0.02562 * 6 5 4 29 29 N 1.28761 * 109.52102 * 359.74450 * 28 6 5 30 30 H 1.09004 * 109.46973 * 59.99435 * 1 2 3 31 31 H 1.09000 * 109.46738 * 300.00259 * 1 2 3 32 32 H 1.08990 * 109.47599 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46738 * 239.99740 * 2 1 3 34 34 H 1.09000 * 109.47418 * 60.00157 * 3 2 1 35 35 H 1.09006 * 109.46830 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47385 * 299.99683 * 3 2 1 37 37 H 1.08000 * 126.57685 * 0.02562 * 5 4 2 38 38 H 1.08996 * 109.58618 * 246.20216 * 10 9 7 39 39 H 1.09000 * 109.58703 * 6.63140 * 10 9 7 40 40 H 1.09000 * 109.63367 * 294.86523 * 11 10 9 41 41 H 1.08995 * 109.42918 * 174.72337 * 11 10 9 42 42 H 1.09008 * 109.47147 * 299.94051 * 14 12 11 43 43 H 1.09001 * 109.47455 * 59.93312 * 14 12 11 44 44 H 1.08996 * 109.47091 * 179.97438 * 14 12 11 45 45 H 1.09001 * 109.46976 * 295.13876 * 17 15 12 46 46 H 1.08991 * 109.47537 * 55.14565 * 17 15 12 47 47 H 0.96998 * 120.00317 * 359.97438 * 18 17 15 48 48 H 0.96994 * 120.00062 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.59148 * 353.36915 * 27 9 7 50 50 H 1.08997 * 109.58376 * 113.80152 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1973 -0.1515 2.4187 6 6 2.6631 -1.1493 3.2269 7 6 2.9992 -1.0145 4.6570 8 8 2.7443 0.0178 5.2468 9 7 3.5888 -2.0356 5.3098 10 6 4.0433 -3.2274 4.5807 11 6 5.5233 -3.4693 4.9139 12 6 5.6900 -3.5604 6.4325 13 1 6.7347 -3.7587 6.6719 14 6 4.8188 -4.6959 6.9733 15 6 5.2617 -2.2389 7.0746 16 1 5.8653 -1.4260 6.6712 17 6 5.4598 -2.3188 8.5897 18 7 5.1599 -1.0168 9.1906 19 6 5.2679 -0.8467 10.5451 20 1 5.5737 -1.6725 11.1704 21 6 4.9833 0.3869 11.1146 22 7 4.6101 1.3931 10.3527 23 14 5.1313 0.6191 12.9622 24 1 6.5273 0.3419 13.3857 25 1 4.7756 2.0169 13.3154 26 1 4.2091 -0.3169 13.6541 27 6 3.7837 -1.9807 6.7651 28 7 2.7634 -2.2746 2.4990 29 7 2.3844 -2.0408 1.2908 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4423 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 2.0080 0.8727 2.7044 38 1 3.4515 -4.0903 4.8859 39 1 3.9305 -3.0651 3.5087 40 1 6.1245 -2.6447 4.5308 41 1 5.8505 -4.4024 4.4554 42 1 3.7739 -4.4976 6.7344 43 1 5.1236 -5.6372 6.5160 44 1 4.9376 -4.7614 8.0548 45 1 4.7909 -3.0730 9.0042 46 1 6.4927 -2.5901 8.8073 47 1 4.8849 -0.2752 8.6291 48 1 4.4115 2.2551 10.7506 49 1 3.4997 -0.9956 7.1350 50 1 3.1712 -2.7441 7.2448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133200245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:53 Heat of formation + Delta-G solvation = 77.965366 kcal Electronic energy + Delta-G solvation = -29782.935269 eV Core-core repulsion = 25847.988212 eV Total energy + Delta-G solvation = -3934.947056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -42.48003 -39.98767 -37.87044 -36.87802 -34.81870 -33.42402 -31.84674 -31.74760 -30.99741 -29.61999 -28.01604 -27.51021 -25.87872 -24.76727 -24.27767 -23.00911 -22.85152 -21.15454 -21.01003 -20.06498 -18.39519 -17.39909 -16.95420 -16.50036 -16.26069 -15.83653 -15.21176 -14.96952 -14.91836 -14.78752 -14.72574 -14.11716 -13.80563 -13.65000 -13.41510 -13.19840 -13.08346 -12.96915 -12.85689 -12.67061 -12.42000 -12.33129 -12.16947 -12.07207 -11.73027 -11.54982 -11.13199 -11.04659 -10.89467 -10.76199 -10.70360 -10.60879 -10.35087 -10.16481 -10.04735 -9.93995 -9.63451 -9.48159 -9.41395 -8.76637 -8.27245 -6.80340 -5.64438 -2.93647 0.96042 1.62222 1.72784 3.13746 3.37402 3.51062 3.54867 3.56412 3.82428 4.04404 4.15510 4.34778 4.47570 4.67333 4.72948 4.84162 4.88219 4.94794 5.01806 5.03668 5.08220 5.08978 5.19183 5.30985 5.41570 5.48158 5.49652 5.52666 5.66987 5.72114 5.78898 5.84078 5.96052 6.06653 6.12301 6.12843 6.16755 6.22184 6.29403 6.46922 6.48337 6.51507 6.69833 6.82874 6.89734 7.01590 7.58287 7.79116 7.79766 8.34294 8.53606 9.64340 10.23488 10.57908 11.57898 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.002770 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.873629 B =10105.639331 C =11675.643606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.170 4.170 4 N -0.355 5.355 5 C 0.093 3.907 6 C -0.091 4.091 7 C 0.596 3.404 8 O -0.530 6.530 9 N -0.593 5.593 10 C 0.084 3.916 11 C -0.127 4.127 12 C -0.085 4.085 13 H 0.071 0.929 14 C -0.152 4.152 15 C -0.101 4.101 16 H 0.073 0.927 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C 0.120 3.880 28 N -0.205 5.205 29 N -0.072 5.072 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.203 0.797 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.023 0.977 46 H 0.020 0.980 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.103 0.897 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 -6.159 -25.755 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 C -0.228 4.228 4 N -0.141 5.141 5 C -0.063 4.063 6 C -0.230 4.230 7 C 0.381 3.619 8 O -0.405 6.405 9 N -0.325 5.325 10 C -0.039 4.039 11 C -0.165 4.165 12 C -0.105 4.105 13 H 0.090 0.910 14 C -0.209 4.209 15 C -0.120 4.120 16 H 0.091 0.909 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.001 4.001 28 N -0.078 5.078 29 N -0.051 5.051 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.219 0.781 38 H 0.086 0.914 39 H 0.140 0.860 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.121 0.879 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.001 -6.925 -26.064 27.627 hybrid contribution -0.089 1.332 1.284 1.852 sum -6.089 -5.593 -24.780 26.123 Atomic orbital electron populations 1.22266 0.92482 1.03853 1.03927 1.21639 0.95691 0.93462 0.84935 1.22279 1.02771 0.93273 1.04513 1.50706 1.44682 1.09583 1.09151 1.23285 0.97382 1.01257 0.84395 1.21573 1.13692 0.90455 0.97277 1.16852 0.78173 0.83519 0.83369 1.90875 1.54780 1.27674 1.67182 1.47919 1.57941 1.17854 1.08778 1.22577 0.94340 0.87234 0.99742 1.22015 0.96419 1.01744 0.96359 1.21087 0.99992 0.95145 0.94228 0.91050 1.21982 1.00098 0.97248 1.01591 1.21670 0.95880 0.97073 0.97417 0.90856 1.20685 0.97420 0.89785 0.88861 1.42427 1.82145 1.07962 1.05239 1.19164 1.38465 0.95694 0.83787 0.91333 1.24743 1.02473 0.96118 0.97647 1.69665 1.52492 1.01833 1.33871 0.86292 0.77664 0.76706 0.85652 1.21390 1.21762 1.21341 1.21793 0.96284 1.04525 0.77512 1.74406 1.11593 1.23105 0.98744 1.81965 1.18159 0.91842 1.13159 0.89687 0.91322 0.91232 0.86843 0.90876 0.91022 0.89270 0.78070 0.91436 0.86042 0.91887 0.91052 0.92395 0.93197 0.91923 0.95924 0.96208 0.78078 0.93510 0.87892 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 9.52 37.16 0.35 -0.33 16 2 C 0.14 0.72 3.96 -67.94 -0.27 0.45 16 3 C -0.17 -0.59 8.85 37.16 0.33 -0.26 16 4 N -0.35 -3.23 3.54 -54.57 -0.19 -3.42 16 5 C 0.09 0.99 10.41 -16.84 -0.18 0.81 16 6 C -0.09 -1.25 6.69 -83.55 -0.56 -1.81 16 7 C 0.60 10.04 7.67 -12.47 -0.10 9.94 16 8 O -0.53 -10.73 16.30 5.28 0.09 -10.65 16 9 N -0.59 -9.44 2.97 -173.74 -0.52 -9.96 16 10 C 0.08 1.10 5.64 -3.49 -0.02 1.08 16 11 C -0.13 -1.55 5.64 -26.38 -0.15 -1.70 16 12 C -0.09 -1.17 2.71 -90.58 -0.25 -1.41 16 13 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.15 -1.91 8.11 37.16 0.30 -1.61 16 15 C -0.10 -1.75 2.15 -90.50 -0.19 -1.94 16 16 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 17 C 0.16 3.33 5.19 -4.04 -0.02 3.31 16 18 N -0.73 -19.31 5.38 -59.90 -0.32 -19.64 16 19 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -29.27 13.06 55.49 0.72 -28.54 16 23 Si 0.91 23.09 29.55 -169.99 -5.02 18.06 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.12 2.15 5.06 -3.71 -0.02 2.13 16 28 N -0.21 -2.72 8.79 32.85 0.29 -2.43 16 29 N -0.07 -0.86 13.78 60.35 0.83 -0.03 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.26 7.23 -51.93 -0.38 -0.12 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 37 H 0.20 1.67 7.34 -52.49 -0.39 1.29 16 38 H 0.07 0.83 6.68 -51.93 -0.35 0.49 16 39 H 0.12 1.58 4.12 -78.10 -0.32 1.26 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.74 4.97 -51.92 -0.26 0.49 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 45 H 0.02 0.47 6.73 -51.93 -0.35 0.12 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.39 10.85 6.89 -40.82 -0.28 10.57 16 48 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 49 H 0.10 2.24 6.20 -51.93 -0.32 1.92 16 50 H 0.07 1.20 6.69 -51.93 -0.35 0.85 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -35.25 389.06 -7.22 -42.47 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.95 Total: 7.19 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.01 Total: 1.08 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: 0.81 Total: -64.01 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.25 -7.22 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133200245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.431 kcal (2) G-P(sol) polarization free energy of solvation -35.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds