Wall clock time and date at job start Wed Apr 1 2020 00:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47338 * 2 1 4 4 N 1.46494 * 109.46847 * 120.00450 * 2 1 3 5 5 C 1.34815 * 126.59355 * 274.99103 * 4 2 1 6 6 C 1.36592 * 106.84392 * 179.97438 * 5 4 2 7 7 C 1.47525 * 125.77382 * 180.02562 * 6 5 4 8 8 O 1.21593 * 119.99788 * 7.31083 * 7 6 5 9 9 N 1.34778 * 119.99936 * 187.31098 * 7 6 5 10 10 C 1.46924 * 120.63171 * 7.08337 * 9 7 6 11 11 C 1.53626 * 108.54349 * 126.36862 * 10 9 7 12 12 C 1.53040 * 109.24107 * 54.85546 * 11 10 9 13 13 H 1.09001 * 109.46066 * 178.48945 * 12 11 10 14 14 C 1.53000 * 109.44788 * 58.52673 * 12 11 10 15 15 C 1.53045 * 109.53786 * 298.51384 * 12 11 10 16 16 H 1.08994 * 109.49337 * 301.41105 * 15 12 11 17 17 C 1.53004 * 109.51850 * 181.33241 * 15 12 11 18 18 N 1.46504 * 109.46484 * 175.14395 * 17 15 12 19 19 C 1.36944 * 119.99843 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99586 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99730 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00390 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99783 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47327 * 59.99140 * 23 21 19 25 25 H 1.48497 * 109.47319 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46805 * 299.99922 * 23 21 19 27 27 C 1.46927 * 120.62691 * 187.36524 * 9 7 6 28 28 N 1.34406 * 108.45648 * 0.02562 * 6 5 4 29 29 N 1.28761 * 109.52102 * 359.74450 * 28 6 5 30 30 H 1.09004 * 109.46973 * 59.99435 * 1 2 3 31 31 H 1.09000 * 109.46738 * 300.00259 * 1 2 3 32 32 H 1.08990 * 109.47599 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46738 * 239.99740 * 2 1 3 34 34 H 1.09000 * 109.47418 * 60.00157 * 3 2 1 35 35 H 1.09006 * 109.46830 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47385 * 299.99683 * 3 2 1 37 37 H 1.08000 * 126.57685 * 0.02562 * 5 4 2 38 38 H 1.08996 * 109.58618 * 246.20216 * 10 9 7 39 39 H 1.09000 * 109.58703 * 6.63140 * 10 9 7 40 40 H 1.09000 * 109.63367 * 294.86523 * 11 10 9 41 41 H 1.08995 * 109.42918 * 174.72337 * 11 10 9 42 42 H 1.09008 * 109.47147 * 299.94051 * 14 12 11 43 43 H 1.09001 * 109.47455 * 59.93312 * 14 12 11 44 44 H 1.08996 * 109.47091 * 179.97438 * 14 12 11 45 45 H 1.09001 * 109.46976 * 295.13876 * 17 15 12 46 46 H 1.08991 * 109.47537 * 55.14565 * 17 15 12 47 47 H 0.96998 * 120.00317 * 359.97438 * 18 17 15 48 48 H 0.96994 * 120.00062 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.59148 * 353.36915 * 27 9 7 50 50 H 1.08997 * 109.58376 * 113.80152 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1973 -0.1515 2.4187 6 6 2.6631 -1.1493 3.2269 7 6 2.9992 -1.0145 4.6570 8 8 2.7443 0.0178 5.2468 9 7 3.5888 -2.0356 5.3098 10 6 4.0433 -3.2274 4.5807 11 6 5.5233 -3.4693 4.9139 12 6 5.6900 -3.5604 6.4325 13 1 6.7347 -3.7587 6.6719 14 6 4.8188 -4.6959 6.9733 15 6 5.2617 -2.2389 7.0746 16 1 5.8653 -1.4260 6.6712 17 6 5.4598 -2.3188 8.5897 18 7 5.1599 -1.0168 9.1906 19 6 5.2679 -0.8467 10.5451 20 1 5.5737 -1.6725 11.1704 21 6 4.9833 0.3869 11.1146 22 7 4.6101 1.3931 10.3527 23 14 5.1313 0.6191 12.9622 24 1 6.5273 0.3419 13.3857 25 1 4.7756 2.0169 13.3154 26 1 4.2091 -0.3169 13.6541 27 6 3.7837 -1.9807 6.7651 28 7 2.7634 -2.2746 2.4990 29 7 2.3844 -2.0408 1.2908 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4423 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 2.0080 0.8727 2.7044 38 1 3.4515 -4.0903 4.8859 39 1 3.9305 -3.0651 3.5087 40 1 6.1245 -2.6447 4.5308 41 1 5.8505 -4.4024 4.4554 42 1 3.7739 -4.4976 6.7344 43 1 5.1236 -5.6372 6.5160 44 1 4.9376 -4.7614 8.0548 45 1 4.7909 -3.0730 9.0042 46 1 6.4927 -2.5901 8.8073 47 1 4.8849 -0.2752 8.6291 48 1 4.4115 2.2551 10.7506 49 1 3.4997 -0.9956 7.1350 50 1 3.1712 -2.7441 7.2448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133200245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:27 Heat of formation + Delta-G solvation = 53.980502 kcal Electronic energy + Delta-G solvation = -29783.975330 eV Core-core repulsion = 25847.988212 eV Total energy + Delta-G solvation = -3935.987118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 22.58 seconds Orbital eigenvalues (eV) -43.39068 -41.26209 -39.21259 -37.48603 -36.58927 -34.89758 -33.47773 -32.55498 -32.14185 -31.22230 -28.71107 -28.31214 -27.43912 -26.08045 -25.20993 -24.71859 -23.91345 -22.54335 -21.81983 -21.19937 -19.68375 -18.93121 -18.38881 -17.58406 -17.20816 -16.99526 -16.74232 -16.17750 -15.99455 -15.90995 -15.63690 -15.49155 -15.26059 -14.90970 -14.57282 -14.47461 -14.30719 -14.02197 -13.76978 -13.63314 -13.52072 -13.20121 -13.01964 -12.99990 -12.81368 -12.64629 -12.54601 -12.47179 -12.21773 -12.15971 -12.09400 -11.89458 -11.87444 -11.64729 -11.41204 -11.32295 -11.21824 -10.90649 -10.78587 -10.41100 -9.56279 -8.97702 -7.91563 -5.21925 0.09658 0.54223 1.02022 1.46447 1.50890 1.56965 1.91259 2.15367 2.57513 3.05169 3.28531 3.40723 3.59285 3.72803 3.78878 3.87111 3.88588 3.90458 3.99683 4.10124 4.17372 4.20785 4.31615 4.36919 4.48234 4.58698 4.59823 4.63395 4.67224 4.76072 4.80389 4.81862 4.85962 4.90094 4.96904 5.11452 5.14208 5.16714 5.18997 5.21900 5.27493 5.31810 5.42061 5.46957 5.50709 5.57483 5.65747 6.28843 6.33995 6.80794 7.07748 7.34293 8.10917 8.33719 9.31781 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.002770 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.873629 B =10105.639331 C =11675.643606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 C -0.168 4.168 4 N -0.339 5.339 5 C 0.107 3.893 6 C -0.116 4.116 7 C 0.590 3.410 8 O -0.577 6.577 9 N -0.593 5.593 10 C 0.084 3.916 11 C -0.120 4.120 12 C -0.079 4.079 13 H 0.081 0.919 14 C -0.148 4.148 15 C -0.089 4.089 16 H 0.050 0.950 17 C 0.161 3.839 18 N -0.748 5.748 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.296 1.296 26 H -0.276 1.276 27 C 0.130 3.870 28 N -0.214 5.214 29 N -0.082 5.082 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.222 0.778 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.032 0.968 46 H 0.024 0.976 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.056 0.944 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 -7.739 -27.473 29.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 C -0.226 4.226 4 N -0.125 5.125 5 C -0.051 4.051 6 C -0.255 4.255 7 C 0.377 3.623 8 O -0.457 6.457 9 N -0.323 5.323 10 C -0.038 4.038 11 C -0.158 4.158 12 C -0.098 4.098 13 H 0.100 0.900 14 C -0.205 4.205 15 C -0.108 4.108 16 H 0.069 0.931 17 C 0.034 3.966 18 N -0.390 5.390 19 C -0.378 4.378 20 H 0.096 0.904 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.806 3.194 24 H -0.202 1.202 25 H -0.223 1.223 26 H -0.202 1.202 27 C 0.007 3.993 28 N -0.087 5.087 29 N -0.061 5.061 30 H 0.131 0.869 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.238 0.762 38 H 0.099 0.901 39 H 0.145 0.855 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.889 -8.590 -27.828 29.713 hybrid contribution -0.153 1.806 1.674 2.467 sum -6.043 -6.785 -26.154 27.687 Atomic orbital electron populations 1.22273 0.91440 1.03370 1.05051 1.22135 0.96445 0.94204 0.83641 1.22315 1.02275 0.92167 1.05811 1.51047 1.43038 1.08662 1.09728 1.23535 0.95700 1.01487 0.84401 1.21230 1.16280 0.91970 0.96035 1.17297 0.77445 0.82900 0.84617 1.90840 1.56791 1.29463 1.68556 1.47998 1.57624 1.18738 1.07962 1.22790 0.95108 0.86230 0.99720 1.22003 0.95534 1.03148 0.95143 1.21071 1.00709 0.92987 0.95044 0.90036 1.21950 0.99548 0.97927 1.01100 1.21525 0.95123 0.98888 0.95294 0.93138 1.20849 0.97435 0.87383 0.90904 1.42675 1.82150 1.09552 1.04661 1.19633 1.37112 0.95932 0.85093 0.90358 1.25650 1.03007 0.95964 1.02513 1.69860 1.54330 1.02152 1.35850 0.85162 0.78112 0.76285 0.79890 1.20198 1.22277 1.20221 1.21472 0.96711 1.01969 0.79125 1.74334 1.12153 1.23129 0.99081 1.81872 1.18330 0.93373 1.12509 0.86873 0.91901 0.92482 0.85400 0.90956 0.91801 0.86630 0.76168 0.90149 0.85521 0.92745 0.87641 0.92856 0.90299 0.92928 0.95061 0.95780 0.79741 0.94109 0.92525 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.52 71.98 0.69 -0.29 16 2 C 0.13 1.05 3.96 44.99 0.18 1.23 16 3 C -0.17 -0.77 8.85 71.98 0.64 -0.13 16 4 N -0.34 -5.72 3.54 -326.56 -1.16 -6.87 16 5 C 0.11 2.21 10.41 83.85 0.87 3.08 16 6 C -0.12 -3.22 6.69 40.82 0.27 -2.95 16 7 C 0.59 20.85 7.67 86.69 0.67 21.51 16 8 O -0.58 -25.08 16.30 -4.01 -0.07 -25.14 16 9 N -0.59 -19.41 2.97 -821.84 -2.44 -21.85 16 10 C 0.08 2.09 5.64 86.51 0.49 2.58 16 11 C -0.12 -2.69 5.64 30.82 0.17 -2.51 16 12 C -0.08 -2.03 2.71 -10.77 -0.03 -2.06 16 13 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 14 C -0.15 -3.38 8.11 71.98 0.58 -2.79 16 15 C -0.09 -3.14 2.15 -10.71 -0.02 -3.17 16 16 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 17 C 0.16 6.77 5.19 86.38 0.45 7.22 16 18 N -0.75 -40.78 5.38 -343.44 -1.85 -42.63 16 19 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 21 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 22 N -0.97 -63.28 13.06 21.65 0.28 -62.99 16 23 Si 0.98 48.13 29.55 68.60 2.03 50.16 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 27 C 0.13 4.87 5.06 86.36 0.44 5.31 16 28 N -0.21 -5.54 8.79 -49.99 -0.44 -5.98 16 29 N -0.08 -1.85 13.78 37.02 0.51 -1.34 16 30 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.37 7.23 -2.39 -0.02 0.36 16 35 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.12 -0.04 8.14 -2.38 -0.02 -0.06 16 37 H 0.22 3.57 7.34 -2.91 -0.02 3.55 16 38 H 0.08 1.83 6.68 -2.39 -0.02 1.81 16 39 H 0.13 3.16 4.12 -36.25 -0.15 3.01 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 1.27 4.97 -2.38 -0.01 1.25 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.05 1.31 6.57 -2.39 -0.02 1.29 16 45 H 0.03 1.28 6.73 -2.39 -0.02 1.27 16 46 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.37 22.14 6.89 -92.71 -0.64 21.50 16 48 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 49 H 0.06 2.67 6.20 -2.39 -0.01 2.66 16 50 H 0.08 2.68 6.69 -2.39 -0.02 2.67 16 Total: -1.00 -79.85 389.06 3.75 -76.11 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.18 Total: 31.45 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.70 Total: 9.09 kcal Atomic # 7 Polarization: -136.58 SS G_CDS: -5.09 Total: -141.66 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.07 Total: -25.14 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -79.85 3.75 -76.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133200245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.086 kcal (2) G-P(sol) polarization free energy of solvation -79.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.58 seconds