Wall clock time and date at job start Wed Apr 1 2020 00:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46900 * 2 1 4 4 N 1.46506 * 109.47129 * 119.99498 * 2 1 3 5 5 C 1.34810 * 126.59268 * 275.00670 * 4 2 1 6 6 C 1.36602 * 106.84085 * 179.97438 * 5 4 2 7 7 C 1.47520 * 125.77256 * 179.97438 * 6 5 4 8 8 O 1.21598 * 120.00041 * 353.27887 * 7 6 5 9 9 N 1.34778 * 119.99724 * 173.27907 * 7 6 5 10 10 C 1.46924 * 120.63171 * 3.78012 * 9 7 6 11 11 C 1.52761 * 109.01058 * 233.58448 * 10 9 7 12 12 C 1.53048 * 109.38118 * 305.59096 * 11 10 9 13 13 H 1.08995 * 109.45883 * 301.21314 * 12 11 10 14 14 C 1.53003 * 109.45679 * 181.25890 * 12 11 10 15 15 C 1.53040 * 109.53654 * 61.23843 * 12 11 10 16 16 H 1.09000 * 109.49917 * 58.59072 * 15 12 11 17 17 C 1.53005 * 109.51819 * 178.66665 * 15 12 11 18 18 N 1.46506 * 109.46685 * 184.85226 * 17 15 12 19 19 C 1.36931 * 119.99668 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00417 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99991 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99612 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00058 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47263 * 59.99630 * 23 21 19 25 25 H 1.48500 * 109.46845 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46854 * 299.99785 * 23 21 19 27 27 C 1.46927 * 120.62691 * 184.06199 * 9 7 6 28 28 N 1.34406 * 108.45388 * 0.02562 * 6 5 4 29 29 N 1.28759 * 109.52191 * 359.74185 * 28 6 5 30 30 H 1.08997 * 109.47216 * 60.00751 * 1 2 3 31 31 H 1.09003 * 109.47232 * 299.99938 * 1 2 3 32 32 H 1.09007 * 109.46561 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47471 * 239.99605 * 2 1 3 34 34 H 1.08999 * 109.47381 * 59.99550 * 3 2 1 35 35 H 1.08998 * 109.46989 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.46573 * 299.99642 * 3 2 1 37 37 H 1.08000 * 126.58302 * 359.97438 * 5 4 2 38 38 H 1.09007 * 109.58751 * 353.42084 * 10 9 7 39 39 H 1.08998 * 109.58776 * 113.84454 * 10 9 7 40 40 H 1.09000 * 109.56658 * 185.55312 * 11 10 9 41 41 H 1.09002 * 109.38170 * 65.51232 * 11 10 9 42 42 H 1.08994 * 109.47159 * 299.93003 * 14 12 11 43 43 H 1.09001 * 109.46851 * 59.92822 * 14 12 11 44 44 H 1.08999 * 109.46991 * 179.97438 * 14 12 11 45 45 H 1.08999 * 109.47472 * 304.85072 * 17 15 12 46 46 H 1.09001 * 109.47038 * 64.85478 * 17 15 12 47 47 H 0.96998 * 120.00223 * 0.02562 * 18 17 15 48 48 H 0.97005 * 119.99247 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.58451 * 246.15283 * 27 9 7 50 50 H 1.08994 * 109.59084 * 6.57723 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1972 -0.1512 2.4188 6 6 2.6632 -1.1489 3.2272 7 6 3.0001 -1.0137 4.6570 8 8 2.9872 0.0822 5.1837 9 7 3.3224 -2.1049 5.3795 10 6 3.4230 -3.4236 4.7394 11 6 2.5342 -4.4115 5.4929 12 6 2.9090 -4.4024 6.9767 13 1 3.9592 -4.6720 7.0876 14 6 2.0412 -5.4142 7.7278 15 6 2.6778 -3.0041 7.5543 16 1 1.6328 -2.7239 7.4215 17 6 3.0210 -3.0038 9.0454 18 7 2.6901 -1.6984 9.6223 19 6 2.9118 -1.4619 10.9527 20 1 3.3310 -2.2374 11.5766 21 6 2.5978 -0.2252 11.4995 22 7 2.0874 0.7201 10.7390 23 14 2.9009 0.0978 13.3143 24 1 4.3460 -0.0698 13.6123 25 1 2.4849 1.4841 13.6465 26 1 2.1132 -0.8641 14.1265 27 6 3.5736 -1.9994 6.8232 28 7 2.7638 -2.2743 2.4992 29 7 2.3848 -2.0405 1.2911 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 2.0083 0.8731 2.7043 38 1 3.0919 -3.3531 3.7032 39 1 4.4566 -3.7678 4.7722 40 1 2.6769 -5.4133 5.0877 41 1 1.4905 -4.1184 5.3795 42 1 0.9909 -5.1445 7.6177 43 1 2.2058 -6.4100 7.3164 44 1 2.3083 -5.4081 8.7846 45 1 2.4468 -3.7804 9.5506 46 1 4.0859 -3.1981 9.1731 47 1 2.3132 -1.0020 9.0621 48 1 1.8683 1.5844 11.1211 49 1 4.6199 -2.2251 7.0294 50 1 3.3420 -0.9895 7.1616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133200246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:07 Heat of formation + Delta-G solvation = 76.915395 kcal Electronic energy + Delta-G solvation = -29685.344023 eV Core-core repulsion = 25750.351436 eV Total energy + Delta-G solvation = -3934.992587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.50001 -39.85022 -37.77368 -36.89104 -34.85913 -33.58830 -31.92347 -31.75111 -31.02367 -29.62464 -28.13076 -27.94216 -25.78789 -24.34828 -24.02882 -23.03559 -22.32740 -21.15529 -21.05953 -20.12558 -19.20959 -17.61024 -16.94803 -16.43429 -16.27852 -15.87124 -15.29586 -14.95055 -14.79071 -14.74200 -14.23651 -14.06745 -13.80145 -13.72458 -13.45448 -13.21303 -13.15096 -12.94246 -12.89676 -12.69323 -12.42246 -12.30316 -12.14996 -11.97673 -11.71210 -11.63382 -11.45210 -11.01799 -10.88559 -10.70314 -10.66882 -10.61843 -10.37877 -10.12347 -10.03153 -9.94811 -9.58111 -9.45152 -9.40021 -8.76850 -8.32620 -6.80286 -5.64832 -2.93817 0.95250 1.60854 1.71310 3.12565 3.39035 3.50951 3.54760 3.56276 3.82007 4.01543 4.15466 4.34536 4.46989 4.67129 4.72349 4.84262 4.87577 4.92440 5.01695 5.03792 5.09004 5.11140 5.18244 5.30790 5.37666 5.48768 5.48962 5.55781 5.68304 5.78047 5.82768 5.86811 5.94937 6.08343 6.12534 6.13785 6.18356 6.29287 6.34029 6.40563 6.45402 6.59027 6.68161 6.83858 6.92936 7.01346 7.57747 7.78928 7.80059 8.34155 8.53285 9.64035 10.23106 10.57530 11.57576 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.002796 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.837169 B =10012.923883 C =11563.370743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.170 4.170 4 N -0.354 5.354 5 C 0.094 3.906 6 C -0.088 4.088 7 C 0.596 3.404 8 O -0.531 6.531 9 N -0.592 5.592 10 C 0.068 3.932 11 C -0.124 4.124 12 C -0.086 4.086 13 H 0.070 0.930 14 C -0.147 4.147 15 C -0.100 4.100 16 H 0.073 0.927 17 C 0.159 3.841 18 N -0.733 5.733 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C 0.120 3.880 28 N -0.207 5.207 29 N -0.071 5.071 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.203 0.797 38 H 0.140 0.860 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.027 0.973 46 H 0.018 0.982 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.067 0.933 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -4.980 -26.391 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.043 3.957 3 C -0.228 4.228 4 N -0.140 5.140 5 C -0.063 4.063 6 C -0.228 4.228 7 C 0.381 3.619 8 O -0.407 6.407 9 N -0.323 5.323 10 C -0.056 4.056 11 C -0.163 4.163 12 C -0.105 4.105 13 H 0.088 0.912 14 C -0.204 4.204 15 C -0.120 4.120 16 H 0.091 0.909 17 C 0.031 3.969 18 N -0.377 5.377 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.001 4.001 28 N -0.079 5.079 29 N -0.050 5.050 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.220 0.780 38 H 0.156 0.844 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.036 0.964 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.329 -5.694 -26.749 27.380 hybrid contribution -0.124 1.320 1.325 1.874 sum -1.453 -4.374 -25.424 25.838 Atomic orbital electron populations 1.22271 0.92426 1.03900 1.03966 1.21654 0.95729 0.93458 0.84895 1.22279 1.02741 0.93274 1.04536 1.50701 1.44560 1.09566 1.09182 1.23282 0.97476 1.01210 0.84308 1.21572 1.13674 0.90334 0.97175 1.16846 0.77405 0.84532 0.83134 1.90871 1.53476 1.25486 1.70847 1.47941 1.67447 1.07551 1.09395 1.22725 1.00054 0.81706 1.01094 1.21863 1.00089 0.98986 0.95319 1.21123 1.00063 0.95094 0.94220 0.91170 1.21880 0.99845 0.97795 1.00919 1.21702 1.00246 0.93801 0.96251 0.90872 1.20731 0.97170 0.89796 0.89243 1.42415 1.76662 1.10569 1.08096 1.19162 1.34964 0.97168 0.85774 0.91331 1.24745 1.01991 0.96442 0.97821 1.69670 1.49201 1.04487 1.34541 0.86290 0.77785 0.76892 0.85335 1.21340 1.21761 1.21387 1.21780 0.98933 1.02421 0.77007 1.74093 1.12555 1.22607 0.98652 1.81967 1.18074 0.91982 1.12934 0.89661 0.91288 0.91200 0.86825 0.90860 0.91042 0.89254 0.78015 0.84389 0.92001 0.91054 0.91926 0.92891 0.93285 0.91757 0.95525 0.96371 0.78130 0.93521 0.91493 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 9.52 37.16 0.35 -0.34 16 2 C 0.14 0.71 3.96 -67.92 -0.27 0.45 16 3 C -0.17 -0.58 8.85 37.16 0.33 -0.25 16 4 N -0.35 -3.20 3.54 -54.56 -0.19 -3.39 16 5 C 0.09 0.99 10.41 -16.83 -0.18 0.81 16 6 C -0.09 -1.21 6.77 -83.55 -0.57 -1.78 16 7 C 0.60 10.08 7.69 -12.48 -0.10 9.98 16 8 O -0.53 -10.75 16.30 5.28 0.09 -10.66 16 9 N -0.59 -9.52 2.98 -174.27 -0.52 -10.04 16 10 C 0.07 0.90 6.28 -3.93 -0.02 0.87 16 11 C -0.12 -1.54 5.35 -26.83 -0.14 -1.69 16 12 C -0.09 -1.19 2.23 -90.57 -0.20 -1.39 16 13 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.15 -1.91 8.82 37.16 0.33 -1.58 16 15 C -0.10 -1.75 1.92 -90.50 -0.17 -1.92 16 16 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 17 C 0.16 3.29 5.41 -4.04 -0.02 3.27 16 18 N -0.73 -19.29 5.38 -59.90 -0.32 -19.62 16 19 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -29.24 13.06 55.49 0.72 -28.52 16 23 Si 0.91 23.09 29.55 -169.99 -5.02 18.06 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.12 2.17 5.51 -3.71 -0.02 2.15 16 28 N -0.21 -2.72 8.64 32.85 0.28 -2.44 16 29 N -0.07 -0.84 13.78 60.35 0.83 -0.01 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.26 7.23 -51.93 -0.38 -0.12 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.20 1.67 7.34 -52.49 -0.39 1.29 16 38 H 0.14 1.81 3.62 -129.60 -0.47 1.34 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16 45 H 0.03 0.56 6.15 -51.93 -0.32 0.24 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.38 10.81 6.89 -40.82 -0.28 10.53 16 48 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.10 2.26 6.23 -51.93 -0.32 1.94 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -35.22 394.77 -7.48 -42.70 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.37 Total: 6.96 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.93 Total: 1.01 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: 0.81 Total: -64.02 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.22 -7.48 -42.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133200246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.610 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds