Wall clock time and date at job start Wed Apr 1 2020 00:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46900 * 2 1 4 4 N 1.46506 * 109.47129 * 119.99498 * 2 1 3 5 5 C 1.34810 * 126.59268 * 275.00670 * 4 2 1 6 6 C 1.36602 * 106.84085 * 179.97438 * 5 4 2 7 7 C 1.47520 * 125.77256 * 179.97438 * 6 5 4 8 8 O 1.21598 * 120.00041 * 353.27887 * 7 6 5 9 9 N 1.34778 * 119.99724 * 173.27907 * 7 6 5 10 10 C 1.46924 * 120.63171 * 3.78012 * 9 7 6 11 11 C 1.52761 * 109.01058 * 233.58448 * 10 9 7 12 12 C 1.53048 * 109.38118 * 305.59096 * 11 10 9 13 13 H 1.08995 * 109.45883 * 301.21314 * 12 11 10 14 14 C 1.53003 * 109.45679 * 181.25890 * 12 11 10 15 15 C 1.53040 * 109.53654 * 61.23843 * 12 11 10 16 16 H 1.09000 * 109.49917 * 58.59072 * 15 12 11 17 17 C 1.53005 * 109.51819 * 178.66665 * 15 12 11 18 18 N 1.46506 * 109.46685 * 184.85226 * 17 15 12 19 19 C 1.36931 * 119.99668 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00417 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99991 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99612 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00058 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47263 * 59.99630 * 23 21 19 25 25 H 1.48500 * 109.46845 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46854 * 299.99785 * 23 21 19 27 27 C 1.46927 * 120.62691 * 184.06199 * 9 7 6 28 28 N 1.34406 * 108.45388 * 0.02562 * 6 5 4 29 29 N 1.28759 * 109.52191 * 359.74185 * 28 6 5 30 30 H 1.08997 * 109.47216 * 60.00751 * 1 2 3 31 31 H 1.09003 * 109.47232 * 299.99938 * 1 2 3 32 32 H 1.09007 * 109.46561 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47471 * 239.99605 * 2 1 3 34 34 H 1.08999 * 109.47381 * 59.99550 * 3 2 1 35 35 H 1.08998 * 109.46989 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.46573 * 299.99642 * 3 2 1 37 37 H 1.08000 * 126.58302 * 359.97438 * 5 4 2 38 38 H 1.09007 * 109.58751 * 353.42084 * 10 9 7 39 39 H 1.08998 * 109.58776 * 113.84454 * 10 9 7 40 40 H 1.09000 * 109.56658 * 185.55312 * 11 10 9 41 41 H 1.09002 * 109.38170 * 65.51232 * 11 10 9 42 42 H 1.08994 * 109.47159 * 299.93003 * 14 12 11 43 43 H 1.09001 * 109.46851 * 59.92822 * 14 12 11 44 44 H 1.08999 * 109.46991 * 179.97438 * 14 12 11 45 45 H 1.08999 * 109.47472 * 304.85072 * 17 15 12 46 46 H 1.09001 * 109.47038 * 64.85478 * 17 15 12 47 47 H 0.96998 * 120.00223 * 0.02562 * 18 17 15 48 48 H 0.97005 * 119.99247 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.58451 * 246.15283 * 27 9 7 50 50 H 1.08994 * 109.59084 * 6.57723 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1972 -0.1512 2.4188 6 6 2.6632 -1.1489 3.2272 7 6 3.0001 -1.0137 4.6570 8 8 2.9872 0.0822 5.1837 9 7 3.3224 -2.1049 5.3795 10 6 3.4230 -3.4236 4.7394 11 6 2.5342 -4.4115 5.4929 12 6 2.9090 -4.4024 6.9767 13 1 3.9592 -4.6720 7.0876 14 6 2.0412 -5.4142 7.7278 15 6 2.6778 -3.0041 7.5543 16 1 1.6328 -2.7239 7.4215 17 6 3.0210 -3.0038 9.0454 18 7 2.6901 -1.6984 9.6223 19 6 2.9118 -1.4619 10.9527 20 1 3.3310 -2.2374 11.5766 21 6 2.5978 -0.2252 11.4995 22 7 2.0874 0.7201 10.7390 23 14 2.9009 0.0978 13.3143 24 1 4.3460 -0.0698 13.6123 25 1 2.4849 1.4841 13.6465 26 1 2.1132 -0.8641 14.1265 27 6 3.5736 -1.9994 6.8232 28 7 2.7638 -2.2743 2.4992 29 7 2.3848 -2.0405 1.2911 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 2.0083 0.8731 2.7043 38 1 3.0919 -3.3531 3.7032 39 1 4.4566 -3.7678 4.7722 40 1 2.6769 -5.4133 5.0877 41 1 1.4905 -4.1184 5.3795 42 1 0.9909 -5.1445 7.6177 43 1 2.2058 -6.4100 7.3164 44 1 2.3083 -5.4081 8.7846 45 1 2.4468 -3.7804 9.5506 46 1 4.0859 -3.1981 9.1731 47 1 2.3132 -1.0020 9.0621 48 1 1.8683 1.5844 11.1211 49 1 4.6199 -2.2251 7.0294 50 1 3.3420 -0.9895 7.1616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133200246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:06 Heat of formation + Delta-G solvation = 53.170347 kcal Electronic energy + Delta-G solvation = -29686.373685 eV Core-core repulsion = 25750.351436 eV Total energy + Delta-G solvation = -3936.022249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 7.68 seconds Orbital eigenvalues (eV) -43.40907 -41.13606 -39.13140 -37.50085 -36.58379 -35.07823 -33.53202 -32.57903 -32.18707 -31.23301 -29.27118 -28.30700 -27.43021 -25.51129 -25.03018 -24.73245 -23.40624 -22.56520 -21.82310 -21.36003 -20.39491 -19.14536 -18.47603 -17.53122 -17.17922 -17.01819 -16.72305 -16.19483 -15.98199 -15.57519 -15.52851 -15.41938 -15.29762 -15.02107 -14.44831 -14.36625 -14.29603 -14.17090 -13.96246 -13.60497 -13.41340 -13.20864 -13.05622 -13.02238 -12.75369 -12.68810 -12.62897 -12.55405 -12.29283 -12.18683 -12.12162 -11.91167 -11.85377 -11.64762 -11.38138 -11.34857 -11.18919 -10.92438 -10.63285 -10.42737 -9.63409 -8.97260 -7.91797 -5.21886 0.09109 0.52913 1.00773 1.46362 1.50808 1.56833 1.89411 2.16675 2.57422 3.02223 3.27867 3.40629 3.58618 3.70704 3.78822 3.84799 3.87908 3.91656 3.99594 4.09291 4.15522 4.19544 4.29447 4.34975 4.54621 4.60041 4.61964 4.63497 4.66548 4.76388 4.77848 4.81990 4.86358 4.95324 4.97572 5.08972 5.13228 5.15529 5.18539 5.23274 5.25134 5.32479 5.44863 5.47405 5.50395 5.58314 5.67983 6.28705 6.33224 6.80555 7.07331 7.34204 8.10699 8.33603 9.31587 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.002796 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.837169 B =10012.923883 C =11563.370743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 C -0.168 4.168 4 N -0.338 5.338 5 C 0.107 3.893 6 C -0.114 4.114 7 C 0.590 3.410 8 O -0.578 6.578 9 N -0.592 5.592 10 C 0.065 3.935 11 C -0.116 4.116 12 C -0.079 4.079 13 H 0.083 0.917 14 C -0.144 4.144 15 C -0.087 4.087 16 H 0.051 0.949 17 C 0.158 3.842 18 N -0.747 5.747 19 C -0.246 4.246 20 H 0.078 0.922 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.977 3.023 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.276 1.276 27 C 0.127 3.873 28 N -0.215 5.215 29 N -0.080 5.080 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.223 0.777 38 H 0.146 0.854 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.024 0.976 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.071 0.929 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -6.523 -28.085 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 C -0.226 4.226 4 N -0.124 5.124 5 C -0.051 4.051 6 C -0.253 4.253 7 C 0.377 3.623 8 O -0.457 6.457 9 N -0.322 5.322 10 C -0.057 4.057 11 C -0.155 4.155 12 C -0.098 4.098 13 H 0.101 0.899 14 C -0.201 4.201 15 C -0.106 4.106 16 H 0.069 0.931 17 C 0.032 3.968 18 N -0.390 5.390 19 C -0.377 4.377 20 H 0.096 0.904 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.805 3.195 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.202 1.202 27 C 0.005 3.995 28 N -0.087 5.087 29 N -0.058 5.058 30 H 0.131 0.869 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.134 0.866 37 H 0.239 0.761 38 H 0.162 0.838 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.202 0.798 48 H 0.059 0.941 49 H 0.090 0.910 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.197 -7.322 -28.486 29.436 hybrid contribution -0.179 1.788 1.703 2.475 sum -1.376 -5.535 -26.783 27.384 Atomic orbital electron populations 1.22280 0.91463 1.03396 1.05050 1.22151 0.96419 0.94240 0.83615 1.22316 1.02299 0.92126 1.05820 1.51042 1.42924 1.08653 1.09749 1.23534 0.95795 1.01429 0.84313 1.21225 1.16298 0.91879 0.95915 1.17295 0.76585 0.83959 0.84444 1.90834 1.55598 1.27130 1.72145 1.48024 1.66970 1.08793 1.08448 1.22959 1.01200 0.80242 1.01313 1.21836 0.99169 1.00417 0.94030 1.21107 1.01132 0.92454 0.95134 0.89906 1.21847 0.99088 0.98941 1.00209 1.21544 0.98540 0.96297 0.94238 0.93080 1.20902 0.97285 0.87370 0.91259 1.42659 1.76616 1.12218 1.07497 1.19627 1.33767 0.97360 0.86972 0.90374 1.25648 1.02577 0.96399 1.02511 1.69864 1.51039 1.04767 1.36519 0.85164 0.78042 0.76413 0.79845 1.20279 1.22269 1.20165 1.21481 0.99191 1.00129 0.78718 1.73999 1.13080 1.22625 0.99002 1.81872 1.18207 0.93495 1.12274 0.86855 0.91941 0.92458 0.85333 0.90964 0.91738 0.86619 0.76105 0.83791 0.90572 0.87695 0.92944 0.93592 0.90365 0.92883 0.94738 0.95831 0.79766 0.94118 0.91034 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.52 71.98 0.69 -0.31 16 2 C 0.13 1.04 3.96 44.99 0.18 1.22 16 3 C -0.17 -0.74 8.85 71.98 0.64 -0.10 16 4 N -0.34 -5.66 3.54 -326.52 -1.16 -6.82 16 5 C 0.11 2.22 10.41 83.85 0.87 3.09 16 6 C -0.11 -3.16 6.77 40.82 0.28 -2.89 16 7 C 0.59 20.91 7.69 86.69 0.67 21.57 16 8 O -0.58 -25.02 16.30 -4.02 -0.07 -25.09 16 9 N -0.59 -19.59 2.98 -823.51 -2.45 -22.04 16 10 C 0.07 1.65 6.28 86.22 0.54 2.19 16 11 C -0.12 -2.65 5.35 30.53 0.16 -2.49 16 12 C -0.08 -2.06 2.23 -10.76 -0.02 -2.09 16 13 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 14 C -0.14 -3.43 8.82 71.98 0.63 -2.79 16 15 C -0.09 -3.08 1.92 -10.71 -0.02 -3.10 16 16 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 17 C 0.16 6.67 5.41 86.38 0.47 7.14 16 18 N -0.75 -40.71 5.38 -343.43 -1.85 -42.56 16 19 C -0.25 -14.41 9.99 84.04 0.84 -13.57 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 22 N -0.97 -63.16 13.06 21.65 0.28 -62.87 16 23 Si 0.98 48.12 29.55 68.60 2.03 50.15 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 27 C 0.13 4.83 5.51 86.36 0.48 5.31 16 28 N -0.21 -5.53 8.64 -49.99 -0.43 -5.96 16 29 N -0.08 -1.79 13.78 37.02 0.51 -1.28 16 30 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.36 7.23 -2.39 -0.02 0.35 16 35 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.12 -0.06 8.14 -2.39 -0.02 -0.07 16 37 H 0.22 3.57 7.34 -2.91 -0.02 3.55 16 38 H 0.15 3.63 3.62 -102.88 -0.37 3.25 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.05 1.38 6.30 -2.39 -0.02 1.37 16 45 H 0.03 1.43 6.15 -2.39 -0.01 1.41 16 46 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.37 22.06 6.89 -92.71 -0.64 21.42 16 48 H 0.25 15.76 8.31 -92.70 -0.77 14.98 16 49 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 50 H 0.06 2.77 6.23 -2.39 -0.01 2.75 16 Total: -1.00 -79.65 394.77 3.67 -75.98 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.06 Total: 31.64 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.86 Total: 8.85 kcal Atomic # 7 Polarization: -136.44 SS G_CDS: -5.09 Total: -141.53 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.07 Total: -25.09 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -79.65 3.67 -75.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133200246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.155 kcal (2) G-P(sol) polarization free energy of solvation -79.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.68 seconds