Wall clock time and date at job start Wed Apr 1 2020 00:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34778 * 120.63351 * 233.63167 * 6 5 4 8 8 O 1.21282 * 120.00258 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99707 * 359.97438 * 7 6 5 10 10 C 1.53001 * 109.47063 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47143 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46837 * 180.02562 * 11 10 9 13 13 C 1.34438 * 126.82278 * 124.71135 * 12 11 10 14 14 N 1.30830 * 108.07713 * 179.88801 * 13 12 11 15 15 C 1.33244 * 109.82786 * 0.38650 * 14 13 12 16 16 N 1.30714 * 108.94735 * 359.75561 * 15 14 13 17 17 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 18 18 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 19 19 H 1.08995 * 109.49919 * 298.61631 * 18 2 1 20 20 C 1.53006 * 109.49435 * 58.68107 * 18 2 1 21 21 N 1.46495 * 109.46960 * 185.00197 * 20 18 2 22 22 C 1.36936 * 119.99962 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00154 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00066 * 179.97438 * 22 21 20 25 25 N 1.31627 * 119.99844 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47385 * 60.00127 * 26 24 22 28 28 H 1.48498 * 109.47356 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47272 * 300.00100 * 26 24 22 30 30 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 32 32 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 33 33 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 34 34 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 35 35 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 36 36 H 1.09002 * 109.58818 * 65.15445 * 5 4 2 37 37 H 1.08996 * 109.47770 * 299.99990 * 9 7 6 38 38 H 1.09003 * 109.47015 * 60.00571 * 9 7 6 39 39 H 1.09005 * 109.47047 * 300.00358 * 10 9 7 40 40 H 1.08997 * 109.47010 * 60.00266 * 10 9 7 41 41 H 1.09001 * 109.46913 * 299.99481 * 11 10 9 42 42 H 1.08997 * 109.47242 * 60.00051 * 11 10 9 43 43 H 1.08003 * 125.95841 * 0.03483 * 13 12 11 44 44 H 1.08000 * 125.52605 * 179.79678 * 15 14 13 45 45 H 1.09003 * 109.59222 * 186.59958 * 17 6 5 46 46 H 1.09006 * 109.70276 * 66.24587 * 17 6 5 47 47 H 1.09001 * 109.46991 * 304.99842 * 20 18 2 48 48 H 1.09000 * 109.47170 * 64.99839 * 20 18 2 49 49 H 0.97002 * 120.00280 * 359.97438 * 21 20 18 50 50 H 0.96999 * 119.99556 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9609 -2.2586 0.0005 8 8 5.3627 -2.7129 -1.0497 9 6 5.4604 -2.8225 1.3057 10 6 6.4570 -3.9493 1.0263 11 6 6.9637 -4.5222 2.3514 12 7 7.9183 -5.6008 2.0838 13 6 9.1799 -5.6916 2.5393 14 7 9.6987 -6.8011 2.0795 15 6 8.8056 -7.4382 1.3233 16 7 7.6994 -6.7423 1.2956 17 6 3.5714 -0.6891 -1.2639 18 6 2.0399 -0.7210 -1.2500 19 1 1.6971 -1.7556 -1.2385 20 6 1.5031 -0.0189 -2.4990 21 7 1.8919 -0.7773 -3.6906 22 6 1.5215 -0.3373 -4.9333 23 1 0.9424 0.5685 -5.0350 24 6 1.8904 -1.0557 -6.0624 25 7 2.5967 -2.1595 -5.9385 26 14 1.3846 -0.4559 -7.7575 27 1 1.9495 0.8973 -7.9929 28 1 1.8985 -1.3934 -8.7881 29 1 -0.0969 -0.3949 -7.8393 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.6569 -0.2207 2.1399 34 1 1.6973 -1.7556 1.2384 35 1 3.9411 -1.2850 2.0988 36 1 3.9142 0.3405 1.3677 37 1 5.9523 -2.0354 1.8771 38 1 4.6195 -3.2152 1.8774 39 1 5.9646 -4.7364 0.4551 40 1 7.2979 -3.5571 0.4544 41 1 7.4559 -3.7353 2.9229 42 1 6.1225 -4.9145 2.9230 43 1 9.6775 -4.9749 3.1759 44 1 8.9689 -8.3777 0.8161 45 1 3.9416 -1.2851 -2.0981 46 1 3.9145 0.3401 -1.3695 47 1 0.4160 0.0393 -2.4442 48 1 1.9184 0.9872 -2.5571 49 1 2.4124 -1.5908 -3.5993 50 1 2.8541 -2.6616 -6.7275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133225676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:17 Heat of formation + Delta-G solvation = 54.954232 kcal Electronic energy + Delta-G solvation = -28859.067561 eV Core-core repulsion = 24923.122667 eV Total energy + Delta-G solvation = -3935.944894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -42.27667 -40.29640 -38.13894 -35.81567 -34.99597 -33.70277 -32.51625 -31.80629 -31.43346 -29.84963 -28.60053 -27.36132 -25.48851 -23.79200 -23.23141 -22.73450 -22.24256 -21.38787 -21.23669 -19.87908 -18.95468 -17.71639 -17.12194 -16.80140 -16.40784 -15.87586 -15.68931 -15.13070 -14.85356 -14.75104 -14.43205 -14.35792 -13.91995 -13.85104 -13.52568 -13.40963 -13.08323 -13.06647 -12.73882 -12.67182 -12.35990 -12.11653 -11.98743 -11.78780 -11.75386 -11.49403 -11.17462 -10.99755 -10.87714 -10.79539 -10.60460 -10.30984 -10.26023 -10.17175 -10.04793 -9.97825 -9.95209 -9.65173 -9.54084 -8.82427 -8.50763 -6.86147 -5.69196 -2.99111 1.38413 2.01699 2.69926 2.73555 3.02841 3.47570 3.51460 3.53453 4.02306 4.05010 4.28949 4.48719 4.57665 4.65348 4.66667 4.76559 4.77511 4.82479 4.88776 4.95637 5.06263 5.13351 5.14094 5.25245 5.36188 5.60995 5.63156 5.65624 5.68027 5.70364 5.79026 5.87900 5.93852 5.97316 5.99631 6.01274 6.17574 6.18598 6.22997 6.31439 6.43651 6.51848 6.57176 6.63921 6.81367 6.89656 7.48986 7.73989 7.82682 8.27824 8.48447 9.59189 10.17423 10.51357 11.52972 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.002491 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.836435 B =11239.154793 C =13495.954816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.129 4.129 5 C 0.107 3.893 6 N -0.612 5.612 7 C 0.508 3.492 8 O -0.527 6.527 9 C -0.135 4.135 10 C -0.118 4.118 11 C 0.130 3.870 12 N -0.377 5.377 13 C 0.250 3.750 14 N -0.550 5.550 15 C 0.195 3.805 16 N -0.311 5.311 17 C 0.120 3.880 18 C -0.101 4.101 19 H 0.073 0.927 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.218 0.782 44 H 0.217 0.783 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.027 0.973 48 H 0.018 0.982 49 H 0.385 0.615 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.814 -0.002 26.372 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.168 4.168 5 C -0.016 4.016 6 N -0.346 5.346 7 C 0.296 3.704 8 O -0.403 6.403 9 C -0.176 4.176 10 C -0.157 4.157 11 C 0.008 3.992 12 N -0.168 5.168 13 C -0.047 4.047 14 N -0.277 5.277 15 C -0.108 4.108 16 N -0.138 5.138 17 C -0.002 4.002 18 C -0.121 4.121 19 H 0.092 0.908 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.109 0.891 43 H 0.234 0.766 44 H 0.233 0.767 45 H 0.121 0.879 46 H 0.083 0.917 47 H 0.044 0.956 48 H 0.035 0.965 49 H 0.219 0.781 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.603 -0.437 25.352 26.201 hybrid contribution -0.182 0.359 -0.771 0.870 sum 6.421 -0.078 24.580 25.405 Atomic orbital electron populations 1.21882 0.94961 1.01970 1.01715 1.21090 0.95981 0.99336 0.93945 0.91107 1.21991 0.94645 1.01641 0.98493 1.21737 0.94815 0.99169 0.85908 1.48196 1.43272 1.35451 1.07705 1.20486 0.79219 0.79532 0.91213 1.90803 1.57054 1.58959 1.33450 1.21585 1.00321 0.99011 0.96696 1.21609 0.99815 0.98433 0.95805 1.21895 0.92134 0.86386 0.98822 1.50580 1.11898 1.17765 1.36590 1.26071 0.83709 0.96811 0.98076 1.70531 1.33034 1.07238 1.16910 1.26048 0.86773 1.00660 0.97298 1.78123 1.24150 0.96516 1.15035 1.21717 0.93659 0.99060 0.85776 1.21711 0.94537 1.00709 0.95139 0.90829 1.20722 0.96813 0.94008 0.85403 1.42410 1.65460 1.29081 1.00800 1.19145 1.28114 1.06327 0.83803 0.91321 1.24763 1.00820 0.97514 0.97820 1.69669 1.42270 1.17157 1.28656 0.86284 0.77960 0.77641 0.84370 1.21310 1.21704 1.21338 0.92782 0.93241 0.91610 0.90887 0.91470 0.90110 0.91383 0.88803 0.88625 0.89270 0.90371 0.87984 0.89108 0.76591 0.76699 0.87864 0.91741 0.95562 0.96472 0.78128 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.82 37.16 0.33 -1.35 16 2 C -0.08 -0.98 2.23 -90.57 -0.20 -1.19 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.15 5.36 -26.61 -0.14 -1.29 16 5 C 0.11 0.90 6.34 -3.71 -0.02 0.87 16 6 N -0.61 -7.92 2.97 -172.77 -0.51 -8.43 16 7 C 0.51 7.08 7.70 -10.99 -0.08 6.99 16 8 O -0.53 -10.32 15.40 5.56 0.09 -10.24 16 9 C -0.14 -1.08 4.05 -27.88 -0.11 -1.19 16 10 C -0.12 -1.10 4.71 -26.73 -0.13 -1.22 16 11 C 0.13 0.77 6.55 -4.04 -0.03 0.74 16 12 N -0.38 -3.45 3.69 -62.63 -0.23 -3.68 16 13 C 0.25 2.00 12.63 -90.65 -1.14 0.85 16 14 N -0.55 -5.90 11.19 -15.83 -0.18 -6.07 16 15 C 0.20 2.08 13.03 -91.81 -1.20 0.89 16 16 N -0.31 -3.76 12.57 29.29 0.37 -3.39 16 17 C 0.12 1.97 5.52 -3.71 -0.02 1.95 16 18 C -0.10 -1.62 1.92 -90.50 -0.17 -1.79 16 19 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 20 C 0.16 3.16 5.41 -4.04 -0.02 3.13 16 21 N -0.73 -18.99 5.38 -59.91 -0.32 -19.31 16 22 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.28 13.06 55.49 0.72 -28.55 16 26 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.83 6.29 -51.92 -0.33 0.50 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.46 7.94 -51.93 -0.41 0.05 16 38 H 0.10 0.56 7.69 -51.93 -0.40 0.16 16 39 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 40 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.10 0.23 8.09 -51.93 -0.42 -0.19 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.22 0.66 8.06 -52.48 -0.42 0.23 16 44 H 0.22 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.10 2.19 6.22 -51.93 -0.32 1.86 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 10.73 6.90 -40.82 -0.28 10.45 16 50 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -38.66 399.95 -10.51 -49.16 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.25 Total: 6.67 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -3.19 Total: -0.17 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -0.15 Total: -69.43 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.66 -10.51 -49.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133225676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.117 kcal (2) G-P(sol) polarization free energy of solvation -38.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds