Wall clock time and date at job start Wed Apr 1 2020 00:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34778 * 120.63351 * 233.63167 * 6 5 4 8 8 O 1.21282 * 120.00258 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99707 * 359.97438 * 7 6 5 10 10 C 1.53001 * 109.47063 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47143 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46837 * 180.02562 * 11 10 9 13 13 C 1.34438 * 126.82278 * 124.71135 * 12 11 10 14 14 N 1.30830 * 108.07713 * 179.88801 * 13 12 11 15 15 C 1.33244 * 109.82786 * 0.38650 * 14 13 12 16 16 N 1.30714 * 108.94735 * 359.75561 * 15 14 13 17 17 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 18 18 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 19 19 H 1.08995 * 109.49919 * 298.61631 * 18 2 1 20 20 C 1.53006 * 109.49435 * 58.68107 * 18 2 1 21 21 N 1.46495 * 109.46960 * 185.00197 * 20 18 2 22 22 C 1.36936 * 119.99962 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00154 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00066 * 179.97438 * 22 21 20 25 25 N 1.31627 * 119.99844 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47385 * 60.00127 * 26 24 22 28 28 H 1.48498 * 109.47356 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47272 * 300.00100 * 26 24 22 30 30 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 32 32 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 33 33 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 34 34 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 35 35 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 36 36 H 1.09002 * 109.58818 * 65.15445 * 5 4 2 37 37 H 1.08996 * 109.47770 * 299.99990 * 9 7 6 38 38 H 1.09003 * 109.47015 * 60.00571 * 9 7 6 39 39 H 1.09005 * 109.47047 * 300.00358 * 10 9 7 40 40 H 1.08997 * 109.47010 * 60.00266 * 10 9 7 41 41 H 1.09001 * 109.46913 * 299.99481 * 11 10 9 42 42 H 1.08997 * 109.47242 * 60.00051 * 11 10 9 43 43 H 1.08003 * 125.95841 * 0.03483 * 13 12 11 44 44 H 1.08000 * 125.52605 * 179.79678 * 15 14 13 45 45 H 1.09003 * 109.59222 * 186.59958 * 17 6 5 46 46 H 1.09006 * 109.70276 * 66.24587 * 17 6 5 47 47 H 1.09001 * 109.46991 * 304.99842 * 20 18 2 48 48 H 1.09000 * 109.47170 * 64.99839 * 20 18 2 49 49 H 0.97002 * 120.00280 * 359.97438 * 21 20 18 50 50 H 0.96999 * 119.99556 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9609 -2.2586 0.0005 8 8 5.3627 -2.7129 -1.0497 9 6 5.4604 -2.8225 1.3057 10 6 6.4570 -3.9493 1.0263 11 6 6.9637 -4.5222 2.3514 12 7 7.9183 -5.6008 2.0838 13 6 9.1799 -5.6916 2.5393 14 7 9.6987 -6.8011 2.0795 15 6 8.8056 -7.4382 1.3233 16 7 7.6994 -6.7423 1.2956 17 6 3.5714 -0.6891 -1.2639 18 6 2.0399 -0.7210 -1.2500 19 1 1.6971 -1.7556 -1.2385 20 6 1.5031 -0.0189 -2.4990 21 7 1.8919 -0.7773 -3.6906 22 6 1.5215 -0.3373 -4.9333 23 1 0.9424 0.5685 -5.0350 24 6 1.8904 -1.0557 -6.0624 25 7 2.5967 -2.1595 -5.9385 26 14 1.3846 -0.4559 -7.7575 27 1 1.9495 0.8973 -7.9929 28 1 1.8985 -1.3934 -8.7881 29 1 -0.0969 -0.3949 -7.8393 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.6569 -0.2207 2.1399 34 1 1.6973 -1.7556 1.2384 35 1 3.9411 -1.2850 2.0988 36 1 3.9142 0.3405 1.3677 37 1 5.9523 -2.0354 1.8771 38 1 4.6195 -3.2152 1.8774 39 1 5.9646 -4.7364 0.4551 40 1 7.2979 -3.5571 0.4544 41 1 7.4559 -3.7353 2.9229 42 1 6.1225 -4.9145 2.9230 43 1 9.6775 -4.9749 3.1759 44 1 8.9689 -8.3777 0.8161 45 1 3.9416 -1.2851 -2.0981 46 1 3.9145 0.3401 -1.3695 47 1 0.4160 0.0393 -2.4442 48 1 1.9184 0.9872 -2.5571 49 1 2.4124 -1.5908 -3.5993 50 1 2.8541 -2.6616 -6.7275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133225676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:05 Heat of formation + Delta-G solvation = 28.903471 kcal Electronic energy + Delta-G solvation = -28860.197207 eV Core-core repulsion = 24923.122667 eV Total energy + Delta-G solvation = -3937.074540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.94698 -41.36790 -39.29221 -36.63010 -36.50253 -35.07584 -33.57440 -33.15420 -32.15168 -31.46076 -29.49921 -28.34087 -26.97940 -25.08701 -24.53546 -23.62546 -22.86983 -22.57755 -22.07664 -21.07571 -19.91229 -19.17028 -18.41375 -17.80693 -17.12578 -16.92623 -16.77311 -16.52853 -15.84489 -15.61923 -15.59759 -15.48168 -15.19508 -15.00078 -14.82543 -14.43541 -14.21972 -14.06488 -14.03455 -13.72162 -13.31476 -13.15525 -13.06744 -12.80885 -12.70263 -12.63441 -12.57534 -12.52190 -12.22728 -12.00019 -11.92751 -11.83847 -11.76805 -11.31175 -11.17124 -10.99226 -10.96898 -10.79689 -10.74503 -10.57761 -9.61087 -9.03188 -7.97390 -5.28126 0.73604 1.41908 1.46615 1.48102 1.53013 1.66041 2.02368 2.05719 2.52781 3.35199 3.40884 3.55246 3.60662 3.68654 3.81501 3.87027 3.88784 4.07571 4.09653 4.12384 4.19865 4.29393 4.33296 4.39649 4.49381 4.56023 4.58429 4.62429 4.65532 4.76045 4.80165 4.87449 4.96618 4.98676 5.00491 5.09796 5.14204 5.22929 5.24451 5.30184 5.32749 5.44392 5.46669 5.47825 5.58419 5.59440 5.99986 6.22814 6.49788 7.14404 7.24307 7.27926 8.05265 8.27020 9.25939 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.002491 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.836435 B =11239.154793 C =13495.954816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.083 0.917 4 C -0.124 4.124 5 C 0.099 3.901 6 N -0.610 5.610 7 C 0.493 3.507 8 O -0.603 6.603 9 C -0.118 4.118 10 C -0.112 4.112 11 C 0.131 3.869 12 N -0.384 5.384 13 C 0.260 3.740 14 N -0.583 5.583 15 C 0.186 3.814 16 N -0.360 5.360 17 C 0.127 3.873 18 C -0.087 4.087 19 H 0.046 0.954 20 C 0.155 3.845 21 N -0.749 5.749 22 C -0.246 4.246 23 H 0.080 0.920 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.979 3.021 27 H -0.275 1.275 28 H -0.298 1.298 29 H -0.274 1.274 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.113 0.887 34 H 0.058 0.942 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.040 0.960 40 H 0.049 0.951 41 H 0.156 0.844 42 H 0.108 0.892 43 H 0.268 0.732 44 H 0.232 0.768 45 H 0.042 0.958 46 H 0.067 0.933 47 H 0.032 0.968 48 H 0.022 0.978 49 H 0.369 0.631 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.372 2.580 30.908 31.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.162 4.162 5 C -0.021 4.021 6 N -0.342 5.342 7 C 0.284 3.716 8 O -0.484 6.484 9 C -0.158 4.158 10 C -0.151 4.151 11 C 0.011 3.989 12 N -0.174 5.174 13 C -0.035 4.035 14 N -0.311 5.311 15 C -0.117 4.117 16 N -0.189 5.189 17 C 0.003 3.997 18 C -0.107 4.107 19 H 0.065 0.935 20 C 0.029 3.971 21 N -0.391 5.391 22 C -0.378 4.378 23 H 0.098 0.902 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.807 3.193 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.200 1.200 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.107 0.893 37 H 0.162 0.838 38 H 0.148 0.852 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.173 0.827 42 H 0.126 0.874 43 H 0.283 0.717 44 H 0.248 0.752 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.050 0.950 48 H 0.040 0.960 49 H 0.200 0.800 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.102 2.219 29.971 30.666 hybrid contribution -0.071 -0.361 -2.139 2.170 sum 6.031 1.858 27.832 28.539 Atomic orbital electron populations 1.21861 0.94563 1.01565 1.02323 1.21105 0.96258 0.99661 0.92809 0.89854 1.22001 0.94946 1.01176 0.98078 1.22211 0.94491 1.01015 0.84431 1.48329 1.42733 1.35081 1.08042 1.21747 0.78409 0.78861 0.92630 1.90780 1.59667 1.61250 1.36703 1.21639 1.01220 0.99513 0.93442 1.21457 0.98863 0.97602 0.97162 1.22190 0.93023 0.86799 0.96907 1.50771 1.12942 1.17514 1.36215 1.27025 0.83048 0.96477 0.96982 1.70528 1.33835 1.08782 1.17988 1.26462 0.86646 1.01282 0.97281 1.78041 1.25473 0.98329 1.17024 1.21293 0.93958 0.98030 0.86409 1.21555 0.94027 0.99298 0.95832 0.93541 1.20945 0.97125 0.93841 0.85185 1.42690 1.65252 1.29065 1.02108 1.19644 1.26941 1.06180 0.85019 0.90235 1.25702 1.01594 0.97954 1.02122 1.69880 1.44412 1.18917 1.29244 0.85137 0.78049 0.77160 0.78973 1.20071 1.22399 1.19955 0.93715 0.90020 0.93569 0.86831 0.92304 0.85640 0.89309 0.83771 0.85217 0.94143 0.93219 0.82655 0.87385 0.71698 0.75203 0.93932 0.91459 0.94975 0.96005 0.79999 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.82 71.98 0.63 -2.33 16 2 C -0.08 -1.66 2.23 -10.76 -0.02 -1.68 16 3 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.12 -1.65 5.36 30.67 0.16 -1.48 16 5 C 0.10 1.19 6.34 86.36 0.55 1.73 16 6 N -0.61 -15.22 2.97 -818.91 -2.43 -17.66 16 7 C 0.49 13.86 7.70 87.66 0.67 14.53 16 8 O -0.60 -25.95 15.40 -3.03 -0.05 -25.99 16 9 C -0.12 -1.51 4.05 29.85 0.12 -1.39 16 10 C -0.11 -2.02 4.71 30.59 0.14 -1.88 16 11 C 0.13 1.13 6.55 86.38 0.57 1.70 16 12 N -0.38 -6.47 3.69 -352.05 -1.30 -7.77 16 13 C 0.26 3.57 12.63 180.36 2.28 5.84 16 14 N -0.58 -12.17 11.19 -203.99 -2.28 -14.45 16 15 C 0.19 4.12 13.03 180.76 2.36 6.48 16 16 N -0.36 -9.02 12.57 -61.24 -0.77 -9.79 16 17 C 0.13 4.40 5.52 86.36 0.48 4.87 16 18 C -0.09 -2.87 1.92 -10.71 -0.02 -2.89 16 19 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 20 C 0.16 6.40 5.41 86.38 0.47 6.86 16 21 N -0.75 -40.96 5.38 -343.45 -1.85 -42.81 16 22 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 23 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 24 C -0.08 -5.01 5.50 84.86 0.47 -4.55 16 25 N -0.97 -64.65 13.06 21.65 0.28 -64.37 16 26 Si 0.98 48.58 29.55 68.60 2.03 50.60 16 27 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 28 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 29 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.11 6.29 -2.38 -0.01 1.09 16 33 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.13 0.45 5.93 -2.39 -0.01 0.44 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.14 0.48 7.94 -2.39 -0.02 0.46 16 38 H 0.13 0.86 7.69 -2.39 -0.02 0.84 16 39 H 0.04 1.12 8.10 -2.38 -0.02 1.10 16 40 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 41 H 0.16 -0.29 8.09 -2.39 -0.02 -0.31 16 42 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.27 0.40 8.06 -2.91 -0.02 0.38 16 44 H 0.23 3.72 8.06 -2.91 -0.02 3.70 16 45 H 0.04 2.00 6.22 -2.39 -0.01 1.99 16 46 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.03 1.30 6.14 -2.39 -0.01 1.29 16 48 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.37 22.30 6.90 -92.71 -0.64 21.66 16 50 H 0.25 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -97.43 399.95 3.61 -93.82 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.29 Total: 26.28 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 9.69 Total: 12.14 kcal Atomic # 7 Polarization: -148.50 SS G_CDS: -8.35 Total: -156.85 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.05 Total: -25.99 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -97.43 3.61 -93.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133225676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.724 kcal (2) G-P(sol) polarization free energy of solvation -97.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds