Wall clock time and date at job start Wed Apr 1 2020 00:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.45726 * 2 1 4 4 C 1.53037 * 109.45445 * 119.96823 * 2 1 3 5 5 C 1.53629 * 109.23999 * 58.52565 * 4 2 1 6 6 N 1.46921 * 108.54224 * 54.85629 * 5 4 2 7 7 C 1.34777 * 120.62738 * 126.36984 * 6 5 4 8 8 O 1.21288 * 119.99593 * 179.71944 * 7 6 5 9 9 C 1.50697 * 120.00369 * 359.71786 * 7 6 5 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34434 * 126.82191 * 124.99999 * 12 11 10 14 14 N 1.30831 * 108.08020 * 179.97438 * 13 12 11 15 15 C 1.33245 * 109.82847 * 0.02562 * 14 13 12 16 16 N 1.30718 * 108.94531 * 359.75451 * 15 14 13 17 17 C 1.46926 * 118.74177 * 306.09309 * 6 5 4 18 18 C 1.53046 * 109.45840 * 240.03329 * 2 1 3 19 19 H 1.08996 * 109.49468 * 181.40542 * 18 2 1 20 20 C 1.53002 * 109.49598 * 61.30526 * 18 2 1 21 21 N 1.46497 * 109.46682 * 175.16143 * 20 18 2 22 22 C 1.36938 * 120.00106 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00012 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00446 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99708 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00160 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47228 * 90.00161 * 26 24 22 28 28 H 1.48497 * 109.47231 * 210.00100 * 26 24 22 29 29 H 1.48497 * 109.47171 * 330.00266 * 26 24 22 30 30 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46610 * 299.96731 * 1 2 3 32 32 H 1.08991 * 109.47517 * 59.96842 * 1 2 3 33 33 H 1.08999 * 109.50019 * 178.59764 * 4 2 1 34 34 H 1.09000 * 109.49750 * 298.69821 * 4 2 1 35 35 H 1.09005 * 109.73870 * 295.11739 * 5 4 2 36 36 H 1.08999 * 109.66251 * 174.55156 * 5 4 2 37 37 H 1.09001 * 109.46613 * 59.99889 * 9 7 6 38 38 H 1.09002 * 109.47120 * 300.00240 * 9 7 6 39 39 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 40 40 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 41 41 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 42 42 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 43 43 H 1.08001 * 125.96097 * 359.93544 * 13 12 11 44 44 H 1.07998 * 125.53102 * 179.97438 * 15 14 13 45 45 H 1.09003 * 109.58886 * 173.64878 * 17 6 5 46 46 H 1.09003 * 109.58632 * 293.93672 * 17 6 5 47 47 H 1.08998 * 109.47227 * 295.16350 * 20 18 2 48 48 H 1.08996 * 109.46927 * 55.16512 * 20 18 2 49 49 H 0.97005 * 120.00473 * 359.97438 * 21 20 18 50 50 H 0.97004 * 120.00137 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7208 1.2501 5 6 1.4942 -2.1569 1.2642 6 7 1.8621 -2.8089 -0.0001 7 6 2.5150 -3.9879 0.0000 8 8 2.8086 -4.5185 -1.0504 9 6 2.8802 -4.6470 1.3051 10 6 3.6083 -5.9633 1.0255 11 6 3.9796 -6.6321 2.3505 12 7 4.6773 -7.8922 2.0828 13 6 5.8871 -8.2565 2.5419 14 7 6.1542 -9.4508 2.0791 15 6 5.1437 -9.8792 1.3238 16 7 4.2131 -8.9615 1.2996 17 6 1.4993 -2.1541 -1.2643 18 6 2.0398 -0.7208 -1.2501 19 1 3.1295 -0.7430 -1.2382 20 6 1.5570 0.0195 -2.4990 21 7 2.1394 -0.6022 -3.6908 22 6 1.8476 -0.1066 -4.9336 23 1 1.1884 0.7429 -5.0351 24 6 2.3990 -0.6959 -6.0630 25 7 3.2020 -1.7315 -5.9394 26 14 2.0015 -0.0194 -7.7581 27 1 2.9955 1.0226 -8.1209 28 1 2.0516 -1.1194 -8.7544 29 1 0.6414 0.5766 -7.7468 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5143 -0.8896 33 1 3.1294 -0.7431 1.2384 34 1 1.6956 -0.1935 2.1398 35 1 0.4088 -2.1375 1.3630 36 1 1.9295 -2.7064 2.0989 37 1 1.9741 -4.8477 1.8767 38 1 3.5313 -3.9855 1.8765 39 1 4.5144 -5.7629 0.4536 40 1 2.9570 -6.6246 0.4542 41 1 4.6312 -5.9705 2.9214 42 1 3.0738 -6.8325 2.9228 43 1 6.5273 -7.6662 3.1808 44 1 5.0989 -10.8318 0.8168 45 1 1.9379 -2.7018 -2.0985 46 1 0.4144 -2.1367 -1.3687 47 1 0.4698 -0.0342 -2.5557 48 1 1.8669 1.0631 -2.4453 49 1 2.7318 -1.3649 -3.5998 50 1 3.5876 -2.1432 -6.7285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133225678.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:27 Heat of formation + Delta-G solvation = 57.898096 kcal Electronic energy + Delta-G solvation = -28993.380802 eV Core-core repulsion = 25057.563563 eV Total energy + Delta-G solvation = -3935.817239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.27581 -40.41208 -38.26982 -35.81074 -34.95795 -33.54163 -32.47113 -31.80649 -31.43375 -29.86928 -28.14124 -27.35245 -25.43696 -24.74611 -23.27359 -22.96846 -22.24644 -21.40104 -21.20281 -19.61126 -18.24893 -17.63882 -17.17139 -16.82406 -16.40538 -15.80739 -15.69305 -15.22748 -14.94104 -14.91116 -14.73837 -14.30620 -14.22773 -13.64356 -13.58836 -13.41668 -13.07844 -12.94243 -12.78560 -12.55413 -12.45648 -12.20981 -11.96126 -11.77666 -11.66009 -11.25245 -11.16685 -11.10535 -10.90986 -10.78974 -10.63903 -10.30347 -10.26169 -10.19437 -10.04695 -9.96608 -9.94770 -9.65920 -9.55349 -8.83271 -8.45667 -6.87149 -5.70080 -2.99978 1.38292 2.01592 2.70494 2.73583 3.03384 3.46762 3.51245 3.53852 4.02602 4.05688 4.29480 4.48237 4.58434 4.65924 4.66479 4.75414 4.79689 4.81193 4.89014 4.96990 5.06120 5.13290 5.16814 5.23526 5.32030 5.54431 5.60296 5.63676 5.67295 5.68671 5.79484 5.86489 5.93143 5.96779 5.99086 6.00229 6.15458 6.18380 6.30064 6.32913 6.35487 6.51878 6.57778 6.65182 6.77636 6.89223 7.49830 7.73898 7.82621 8.28428 8.47530 9.58438 10.16531 10.50452 11.52160 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.002510 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.063369 B =11152.590202 C =13400.259724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.129 4.129 5 C 0.105 3.895 6 N -0.612 5.612 7 C 0.508 3.492 8 O -0.527 6.527 9 C -0.135 4.135 10 C -0.118 4.118 11 C 0.130 3.870 12 N -0.377 5.377 13 C 0.251 3.749 14 N -0.550 5.550 15 C 0.195 3.805 16 N -0.312 5.312 17 C 0.120 3.880 18 C -0.101 4.101 19 H 0.072 0.928 20 C 0.160 3.840 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.218 0.782 44 H 0.217 0.783 45 H 0.102 0.898 46 H 0.067 0.933 47 H 0.023 0.977 48 H 0.020 0.980 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 -5.626 26.408 27.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.018 4.018 6 N -0.345 5.345 7 C 0.295 3.705 8 O -0.403 6.403 9 C -0.176 4.176 10 C -0.156 4.156 11 C 0.008 3.992 12 N -0.168 5.168 13 C -0.046 4.046 14 N -0.277 5.277 15 C -0.108 4.108 16 N -0.140 5.140 17 C -0.002 4.002 18 C -0.121 4.121 19 H 0.091 0.909 20 C 0.032 3.968 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.234 0.766 44 H 0.233 0.767 45 H 0.120 0.880 46 H 0.085 0.915 47 H 0.040 0.960 48 H 0.038 0.962 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.078 -6.018 25.389 26.115 hybrid contribution 0.085 0.493 -0.776 0.923 sum -0.993 -5.525 24.613 25.245 Atomic orbital electron populations 1.21988 0.95233 1.01970 1.01806 1.21074 0.96018 0.99387 0.93949 0.90863 1.22018 1.01082 0.95119 0.98478 1.21856 1.00331 0.93741 0.85859 1.48185 1.57484 1.21171 1.07705 1.20486 0.77858 0.80938 0.91203 1.90804 1.53034 1.63024 1.33433 1.21584 1.02179 0.97135 0.96709 1.21604 1.02628 0.95615 0.95794 1.21895 0.98113 0.80395 0.98830 1.50571 1.14851 1.14721 1.36673 1.26079 0.87130 0.93392 0.97964 1.70534 1.29340 1.11012 1.16812 1.26039 0.87483 0.99889 0.97346 1.78101 1.23777 0.96723 1.15395 1.21730 0.99832 0.92915 0.85714 1.21679 1.00798 0.94471 0.95148 0.90914 1.20678 0.95978 0.94697 0.85411 1.42421 1.57013 1.37547 1.00800 1.19191 1.23452 1.10908 0.83778 0.91260 1.24763 1.00074 0.98268 0.97829 1.69677 1.35530 1.24002 1.28532 0.86209 0.77738 0.77758 0.84579 1.21781 1.21777 1.20807 0.92453 0.93165 0.91772 0.91513 0.90931 0.91087 0.90219 0.88728 0.88726 0.90273 0.89377 0.87946 0.89164 0.76565 0.76717 0.87994 0.91489 0.95976 0.96229 0.78130 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.11 37.16 0.30 -1.33 16 2 C -0.09 -0.98 2.71 -90.58 -0.25 -1.23 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.12 5.64 -26.39 -0.15 -1.27 16 5 C 0.11 0.89 5.90 -3.49 -0.02 0.87 16 6 N -0.61 -7.87 2.97 -172.50 -0.51 -8.38 16 7 C 0.51 7.06 7.70 -10.99 -0.08 6.98 16 8 O -0.53 -10.32 15.40 5.55 0.09 -10.24 16 9 C -0.14 -1.08 4.05 -27.88 -0.11 -1.19 16 10 C -0.12 -1.10 4.72 -26.73 -0.13 -1.22 16 11 C 0.13 0.77 6.55 -4.04 -0.03 0.74 16 12 N -0.38 -3.45 3.69 -62.63 -0.23 -3.68 16 13 C 0.25 2.04 12.63 -90.65 -1.14 0.89 16 14 N -0.55 -5.93 11.19 -15.83 -0.18 -6.11 16 15 C 0.20 2.07 13.03 -91.81 -1.20 0.88 16 16 N -0.31 -3.72 12.57 29.29 0.37 -3.35 16 17 C 0.12 1.96 5.04 -3.71 -0.02 1.94 16 18 C -0.10 -1.61 2.15 -90.50 -0.19 -1.80 16 19 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 20 C 0.16 3.19 5.19 -4.04 -0.02 3.16 16 21 N -0.73 -18.95 5.38 -59.91 -0.32 -19.28 16 22 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.21 13.06 55.49 0.72 -28.49 16 26 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.06 0.61 4.97 -51.93 -0.26 0.36 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.55 6.69 -51.93 -0.35 0.21 16 36 H 0.08 0.43 5.93 -51.93 -0.31 0.13 16 37 H 0.09 0.52 7.93 -51.93 -0.41 0.11 16 38 H 0.09 0.50 7.70 -51.93 -0.40 0.10 16 39 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 41 H 0.10 0.25 8.09 -51.93 -0.42 -0.17 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.22 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.22 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.10 2.16 6.21 -51.93 -0.32 1.84 16 46 H 0.07 1.08 6.70 -51.93 -0.35 0.73 16 47 H 0.02 0.44 6.72 -51.93 -0.35 0.09 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.38 10.70 6.89 -40.82 -0.28 10.42 16 50 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -38.58 393.88 -10.42 -48.99 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.98 Total: 6.78 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -3.28 Total: -0.13 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.15 Total: -69.29 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.58 -10.42 -48.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133225678.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.892 kcal (2) G-P(sol) polarization free energy of solvation -38.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds