Wall clock time and date at job start Wed Apr 1 2020 00:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46033 * 2 1 4 4 C 1.53030 * 109.45376 * 119.97164 * 2 1 3 5 5 C 1.52764 * 109.38701 * 181.25233 * 4 2 1 6 6 N 1.46928 * 109.00725 * 305.59011 * 5 4 2 7 7 C 1.34775 * 120.62753 * 233.58396 * 6 5 4 8 8 O 1.21281 * 119.99512 * 179.71971 * 7 6 5 9 9 C 1.50690 * 120.00223 * 359.71926 * 7 6 5 10 10 C 1.53006 * 109.47335 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47280 * 179.97438 * 10 9 7 12 12 C 1.35361 * 126.74829 * 125.29254 * 11 10 9 13 13 N 1.35313 * 106.17197 * 180.12377 * 12 11 10 14 14 C 1.46499 * 125.86684 * 179.90335 * 13 12 11 15 15 N 1.28712 * 108.26322 * 359.64606 * 13 12 11 16 16 N 1.28634 * 110.18224 * 0.22427 * 15 13 12 17 17 C 1.46925 * 118.73811 * 53.30757 * 6 5 4 18 18 C 1.53041 * 109.45847 * 240.03810 * 2 1 3 19 19 H 1.09003 * 109.49491 * 298.57882 * 18 2 1 20 20 C 1.53005 * 109.50124 * 58.67280 * 18 2 1 21 21 N 1.46496 * 109.47140 * 184.84102 * 20 18 2 22 22 C 1.36938 * 119.99901 * 179.97438 * 21 20 18 23 23 H 1.07995 * 119.99905 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99949 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99796 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99992 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47051 * 0.02562 * 26 24 22 28 28 H 1.48510 * 109.46660 * 120.00099 * 26 24 22 29 29 H 1.48493 * 109.47554 * 240.00437 * 26 24 22 30 30 H 1.08993 * 109.47074 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46439 * 299.96711 * 1 2 3 32 32 H 1.09001 * 109.47412 * 59.96273 * 1 2 3 33 33 H 1.09002 * 109.49879 * 301.33021 * 4 2 1 34 34 H 1.09008 * 109.49692 * 61.42354 * 4 2 1 35 35 H 1.09002 * 109.51028 * 185.70884 * 5 4 2 36 36 H 1.09000 * 109.42901 * 65.42605 * 5 4 2 37 37 H 1.08998 * 109.47719 * 60.00286 * 9 7 6 38 38 H 1.08998 * 109.47499 * 299.99922 * 9 7 6 39 39 H 1.08996 * 109.47272 * 59.99875 * 10 9 7 40 40 H 1.09004 * 109.46902 * 300.00026 * 10 9 7 41 41 H 1.07997 * 126.91163 * 0.02562 * 12 11 10 42 42 H 1.09002 * 109.47391 * 269.71876 * 14 13 12 43 43 H 1.09001 * 109.46813 * 149.71932 * 14 13 12 44 44 H 1.09004 * 109.47041 * 29.72059 * 14 13 12 45 45 H 1.08995 * 109.58755 * 66.43123 * 17 6 5 46 46 H 1.09001 * 109.58506 * 186.71569 * 17 6 5 47 47 H 1.09001 * 109.46733 * 304.84294 * 20 18 2 48 48 H 1.08996 * 109.46962 * 64.83648 * 20 18 2 49 49 H 0.97002 * 120.00353 * 0.02562 * 21 20 18 50 50 H 0.97007 * 119.99630 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5670 -0.6927 1.2643 6 7 4.0677 -1.2492 0.0000 7 6 4.9610 -2.2584 0.0000 8 8 5.3628 -2.7125 -1.0503 9 6 5.4605 -2.8225 1.3050 10 6 6.4581 -3.9485 1.0255 11 6 6.9581 -4.5121 2.3306 12 6 6.9240 -5.8084 2.7189 13 7 7.4746 -5.8463 3.9544 14 6 7.6508 -7.0441 4.7792 15 7 7.8218 -4.6499 4.2782 16 7 7.5274 -3.8307 3.3311 17 6 3.5714 -0.6888 -1.2642 18 6 2.0398 -0.7207 -1.2502 19 1 1.6976 -1.7555 -1.2385 20 6 1.5029 -0.0186 -2.4991 21 7 1.8951 -0.7747 -3.6910 22 6 1.5243 -0.3348 -4.9336 23 1 0.9432 0.5698 -5.0350 24 6 1.8964 -1.0510 -6.0631 25 7 2.6051 -2.1532 -5.9395 26 14 1.3900 -0.4513 -7.7581 27 1 0.6038 0.8016 -7.6255 28 1 2.6033 -0.1899 -8.5735 29 1 0.5607 -1.4884 -8.4229 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5134 0.8903 32 1 -0.3634 0.5144 -0.8896 33 1 1.6571 -0.2208 2.1398 34 1 1.6974 -1.7557 1.2382 35 1 3.9343 -1.2913 2.0979 36 1 3.9097 0.3364 1.3717 37 1 4.6198 -3.2152 1.8768 38 1 5.9525 -2.0354 1.8766 39 1 7.2989 -3.5554 0.4540 40 1 5.9665 -4.7357 0.4538 41 1 6.5343 -6.6439 2.1565 42 1 6.7699 -7.1872 5.4050 43 1 8.5302 -6.9234 5.4118 44 1 7.7835 -7.9130 4.1344 45 1 3.9145 0.3406 -1.3672 46 1 3.9437 -1.2833 -2.0986 47 1 0.4157 0.0370 -2.4455 48 1 1.9159 0.9885 -2.5555 49 1 2.4168 -1.5874 -3.5999 50 1 2.8647 -2.6539 -6.7287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133364091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:28 Heat of formation + Delta-G solvation = 36.895873 kcal Electronic energy + Delta-G solvation = -28962.701761 eV Core-core repulsion = 25025.973797 eV Total energy + Delta-G solvation = -3936.727963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.20375 -41.34479 -39.24677 -36.60025 -36.11261 -35.05004 -34.43574 -33.50032 -31.72662 -31.04595 -29.26511 -28.67299 -27.51160 -25.90359 -24.84418 -24.06315 -23.00577 -22.55906 -21.95822 -21.02481 -19.83305 -19.12732 -18.35201 -17.70371 -17.54784 -16.95294 -16.75903 -16.73146 -15.74177 -15.60225 -15.50283 -15.45554 -15.12471 -14.89418 -14.45807 -14.29015 -14.24763 -14.10922 -13.92969 -13.71401 -13.51388 -13.29521 -13.04073 -12.94110 -12.76331 -12.62693 -12.58793 -12.55482 -12.30502 -12.12224 -11.95514 -11.89401 -11.75291 -11.65466 -11.29537 -11.15343 -10.97539 -10.95117 -10.70456 -10.11972 -9.59561 -8.98526 -7.93756 -5.23756 0.65623 1.45282 1.47036 1.47476 1.57438 1.59328 1.66817 2.06112 2.55808 3.30821 3.39041 3.59102 3.72079 3.75283 3.83982 3.89665 4.03553 4.09484 4.14046 4.18314 4.27478 4.32054 4.36512 4.39991 4.44859 4.59027 4.61683 4.66053 4.67208 4.75471 4.79497 4.82035 4.88599 4.97939 4.99884 5.02588 5.10653 5.12184 5.15302 5.25406 5.26031 5.31354 5.46738 5.49592 5.58977 5.60686 5.70614 6.27251 6.48638 7.23050 7.32476 7.51190 8.09604 8.31663 9.29977 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.002354 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.897778 B =11892.599083 C =13379.904203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.081 0.919 4 C -0.122 4.122 5 C 0.100 3.900 6 N -0.610 5.610 7 C 0.503 3.497 8 O -0.589 6.589 9 C -0.114 4.114 10 C -0.012 4.012 11 C -0.035 4.035 12 C -0.032 4.032 13 N -0.288 5.288 14 C 0.069 3.931 15 N -0.121 5.121 16 N -0.299 5.299 17 C 0.127 3.873 18 C -0.087 4.087 19 H 0.052 0.948 20 C 0.156 3.844 21 N -0.747 5.747 22 C -0.243 4.243 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.263 1.263 28 H -0.295 1.295 29 H -0.292 1.292 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.228 0.772 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.128 0.872 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.034 0.966 48 H 0.021 0.979 49 H 0.370 0.630 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 -6.998 28.645 29.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.099 0.901 4 C -0.160 4.160 5 C -0.021 4.021 6 N -0.342 5.342 7 C 0.293 3.707 8 O -0.470 6.470 9 C -0.154 4.154 10 C -0.052 4.052 11 C -0.174 4.174 12 C -0.184 4.184 13 N -0.082 5.082 14 C -0.070 4.070 15 N -0.100 5.100 16 N -0.166 5.166 17 C 0.004 3.996 18 C -0.106 4.106 19 H 0.070 0.930 20 C 0.030 3.970 21 N -0.390 5.390 22 C -0.375 4.375 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.805 3.195 27 H -0.187 1.187 28 H -0.222 1.222 29 H -0.220 1.220 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.245 0.755 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.147 0.853 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.039 0.961 49 H 0.202 0.798 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.048 -6.237 29.163 30.247 hybrid contribution -0.280 -0.921 -2.331 2.522 sum 4.769 -7.158 26.833 28.177 Atomic orbital electron populations 1.21851 0.94294 1.01721 1.02318 1.21088 0.96435 0.99558 0.92741 0.90072 1.21902 0.94370 1.01387 0.98323 1.22016 0.94942 1.00626 0.84536 1.48287 1.42749 1.35196 1.07984 1.21403 0.78322 0.78940 0.92030 1.90743 1.59258 1.61136 1.35825 1.21530 1.00729 0.99647 0.93502 1.19494 0.98090 0.97776 0.89851 1.22069 1.05168 0.91973 0.98169 1.23980 1.05028 1.00904 0.88477 1.47643 1.37750 1.09255 1.13524 1.22745 1.06233 0.81800 0.96210 1.78212 1.21315 0.88489 1.21978 1.74973 1.15172 1.26567 0.99865 1.21346 0.94038 0.98097 0.86144 1.21548 0.93912 0.99550 0.95635 0.92984 1.20924 0.97141 0.93826 0.85121 1.42679 1.65069 1.29253 1.01980 1.19703 1.26586 1.06182 0.85014 0.90340 1.25662 1.01671 0.98068 1.01926 1.69878 1.44330 1.19022 1.29021 0.85027 0.77060 0.77688 0.79710 1.18666 1.22215 1.21964 0.93438 0.90284 0.93305 0.87221 0.92022 0.87238 0.89768 0.86720 0.87291 0.91314 0.88943 0.75507 0.87253 0.87548 0.85345 0.91674 0.93067 0.94853 0.96112 0.79808 0.94134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.81 71.98 0.63 -2.45 16 2 C -0.08 -1.80 2.23 -10.77 -0.02 -1.82 16 3 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 4 C -0.12 -2.04 5.34 30.53 0.16 -1.87 16 5 C 0.10 1.77 6.31 86.22 0.54 2.31 16 6 N -0.61 -17.25 2.98 -819.74 -2.44 -19.69 16 7 C 0.50 15.61 7.70 87.65 0.67 16.29 16 8 O -0.59 -24.86 15.39 -3.03 -0.05 -24.91 16 9 C -0.11 -2.43 4.03 29.85 0.12 -2.31 16 10 C -0.01 -0.28 5.08 29.85 0.15 -0.12 16 11 C -0.03 -0.72 6.50 41.60 0.27 -0.45 16 12 C -0.03 -0.44 11.54 83.49 0.96 0.52 16 13 N -0.29 -3.98 3.74 -369.22 -1.38 -5.36 16 14 C 0.07 0.16 11.39 127.77 1.46 1.61 16 15 N -0.12 -2.69 13.16 37.02 0.49 -2.20 16 16 N -0.30 -7.53 12.40 -48.60 -0.60 -8.14 16 17 C 0.13 4.55 5.52 86.36 0.48 5.03 16 18 C -0.09 -2.90 1.92 -10.71 -0.02 -2.92 16 19 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 20 C 0.16 6.44 5.41 86.38 0.47 6.91 16 21 N -0.75 -40.40 5.38 -343.45 -1.85 -42.25 16 22 C -0.24 -14.22 9.99 84.03 0.84 -13.38 16 23 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 24 C -0.08 -4.92 5.50 84.86 0.47 -4.46 16 25 N -0.97 -63.38 13.06 21.65 0.28 -63.10 16 26 Si 0.98 48.18 29.55 68.60 2.03 50.21 16 27 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 29 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.20 6.30 -2.39 -0.02 1.18 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.11 1.39 5.93 -2.39 -0.01 1.38 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.88 7.68 -2.39 -0.02 1.87 16 38 H 0.11 2.13 7.95 -2.39 -0.02 2.11 16 39 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 40 H 0.09 1.97 8.08 -2.38 -0.02 1.95 16 41 H 0.23 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.13 -0.43 8.14 -2.38 -0.02 -0.45 16 45 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.05 2.39 6.21 -2.39 -0.01 2.38 16 47 H 0.03 1.35 6.15 -2.39 -0.01 1.33 16 48 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.37 21.96 6.90 -92.71 -0.64 21.32 16 50 H 0.25 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -87.42 399.46 3.96 -83.46 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.30 Total: 29.09 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 7.18 Total: 2.88 kcal Atomic # 7 Polarization: -135.23 SS G_CDS: -5.50 Total: -140.73 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -87.42 3.96 -83.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133364091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.357 kcal (2) G-P(sol) polarization free energy of solvation -87.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds