Wall clock time and date at job start Wed Apr 1 2020 00:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.30606 * 2 1 4 4 C 1.54384 * 110.34084 * 237.82541 * 2 1 3 5 5 N 1.48142 * 104.61833 * 217.15626 * 4 2 1 6 6 C 1.34779 * 127.83977 * 219.58602 * 5 4 2 7 7 O 1.21286 * 120.00040 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00201 * 0.02752 * 6 5 4 9 9 C 1.52992 * 109.47592 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 6 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 8 12 12 C 1.35311 * 125.86532 * 124.71073 * 11 10 9 13 13 C 1.35349 * 106.17207 * 179.90472 * 12 11 10 14 14 N 1.33767 * 106.49736 * 0.35700 * 13 12 11 15 15 N 1.28629 * 108.88484 * 359.77207 * 14 13 12 16 16 C 1.48150 * 104.32483 * 39.84845 * 5 4 2 17 17 C 1.54292 * 110.43038 * 122.23678 * 2 1 3 18 18 C 1.52994 * 110.34204 * 0.04588 * 17 2 1 19 19 C 1.52999 * 110.33755 * 237.78573 * 17 2 1 20 20 N 1.46502 * 109.46624 * 180.02562 * 19 17 2 21 21 C 1.36935 * 119.99999 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99994 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00363 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00442 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99714 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46988 * 90.00171 * 25 23 21 27 27 H 1.48496 * 109.47242 * 209.99870 * 25 23 21 28 28 H 1.48498 * 109.47571 * 330.00555 * 25 23 21 29 29 H 1.09000 * 109.46753 * 180.72045 * 1 2 3 30 30 H 1.09003 * 109.47114 * 300.71783 * 1 2 3 31 31 H 1.08993 * 109.47255 * 60.71932 * 1 2 3 32 32 H 1.08999 * 110.40770 * 98.37077 * 4 2 1 33 33 H 1.09007 * 110.41175 * 335.94289 * 4 2 1 34 34 H 1.09002 * 109.47210 * 59.99599 * 8 6 5 35 35 H 1.09001 * 109.46665 * 299.99857 * 8 6 5 36 36 H 1.09002 * 109.47103 * 59.99616 * 9 8 6 37 37 H 1.08998 * 109.46862 * 300.00428 * 9 8 6 38 38 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 39 39 H 1.09001 * 109.46832 * 299.99974 * 10 9 8 40 40 H 1.08005 * 126.91021 * 0.02578 * 12 11 10 41 41 H 1.08007 * 126.75155 * 180.12795 * 13 12 11 42 42 H 1.08996 * 110.40814 * 78.93279 * 16 5 4 43 43 H 1.08994 * 110.40721 * 201.37090 * 16 5 4 44 44 H 1.09000 * 109.47361 * 59.99986 * 18 17 2 45 45 H 1.09002 * 109.46883 * 180.02562 * 18 17 2 46 46 H 1.09005 * 109.47001 * 299.99496 * 18 17 2 47 47 H 1.08998 * 109.47498 * 299.99941 * 19 17 2 48 48 H 1.08998 * 109.47579 * 60.00232 * 19 17 2 49 49 H 0.97002 * 120.00061 * 0.02562 * 20 19 17 50 50 H 0.96998 * 120.00041 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2679 -1.4789 -0.7248 6 6 4.4436 -1.6617 -1.3579 7 8 5.3391 -2.2694 -0.8104 8 6 4.6456 -1.1110 -2.7461 9 6 6.0554 -1.4543 -3.2309 10 6 6.2602 -0.8957 -4.6405 11 7 7.6106 -1.2240 -5.1044 12 6 7.9185 -1.8817 -6.2461 13 6 9.2690 -1.9656 -6.2803 14 7 9.7148 -1.3701 -5.1686 15 7 8.7075 -0.9413 -4.4933 16 6 2.8814 -1.9461 0.6269 17 6 2.0686 -0.7713 1.2230 18 6 0.9100 -1.3052 2.0675 19 6 2.9709 0.1320 2.0661 20 7 3.4716 -0.6186 3.2203 21 6 4.3046 -0.0122 4.1224 22 1 4.5920 1.0196 3.9831 23 6 4.7794 -0.7234 5.2157 24 7 5.5796 -0.1404 6.0830 25 14 4.2816 -2.5076 5.4570 26 1 5.2591 -3.3912 4.7719 27 1 4.2606 -2.8239 6.9077 28 1 2.9297 -2.7264 4.8829 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3633 0.5250 0.8835 31 1 -0.3633 0.5026 -0.8963 32 1 2.3383 -0.0776 -2.0213 33 1 1.3241 -1.4858 -1.5797 34 1 4.5212 -0.0282 -2.7291 35 1 3.9116 -1.5505 -3.4215 36 1 6.1803 -2.5370 -3.2478 37 1 6.7891 -1.0145 -2.5552 38 1 6.1352 0.1870 -4.6240 39 1 5.5266 -1.3360 -5.3158 40 1 7.2261 -2.2614 -6.9829 41 1 9.8686 -2.4264 -7.0514 42 1 2.2641 -2.8417 0.5574 43 1 3.7683 -2.1405 1.2298 44 1 0.2999 -1.9772 1.4639 45 1 1.3060 -1.8465 2.9267 46 1 0.2987 -0.4718 2.4138 47 1 3.8119 0.4718 1.4616 48 1 2.4007 0.9940 2.4124 49 1 3.2137 -1.5453 3.3452 50 1 5.9111 -0.6374 6.8472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181703894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:10 Heat of formation + Delta-G solvation = 80.268594 kcal Electronic energy + Delta-G solvation = -29219.435512 eV Core-core repulsion = 25284.588331 eV Total energy + Delta-G solvation = -3934.847181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.47086 -40.44769 -38.58889 -36.11593 -34.95918 -33.39683 -32.85777 -31.65408 -31.27485 -30.06549 -28.48229 -27.00301 -25.83357 -25.80716 -23.51224 -23.01581 -22.72692 -21.40521 -21.04698 -19.36097 -18.61016 -18.07645 -17.58596 -16.96041 -16.62626 -16.16685 -15.66986 -15.37093 -15.14636 -14.82715 -14.57688 -14.48699 -14.00417 -13.83281 -13.81637 -13.40780 -12.96998 -12.81769 -12.66866 -12.58690 -12.29846 -12.10757 -12.03925 -11.85725 -11.72196 -11.58190 -11.45718 -11.34165 -11.28488 -11.10221 -10.87834 -10.59616 -10.39568 -10.37637 -10.24129 -10.00970 -9.83553 -9.65152 -9.52368 -8.86910 -8.70200 -7.19352 -5.72716 -3.08031 1.33998 2.01909 2.36308 2.61734 2.89735 3.38247 3.43664 3.48651 3.95026 4.13178 4.24255 4.42237 4.45378 4.52807 4.62839 4.65888 4.71851 4.72452 4.84368 4.89203 4.94906 5.06571 5.14202 5.22166 5.27530 5.34436 5.37331 5.43811 5.56439 5.59958 5.61052 5.68594 5.72230 5.79106 5.84752 5.90253 5.93473 5.98305 6.07216 6.16906 6.26025 6.27975 6.36689 6.52376 6.64004 6.73763 7.55890 8.02507 8.16330 8.28535 8.46033 9.24618 9.96968 10.16153 11.45900 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.002734 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.004086 B =10239.963075 C =12063.546081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.105 3.895 5 N -0.621 5.621 6 C 0.531 3.469 7 O -0.530 6.530 8 C -0.130 4.130 9 C -0.120 4.120 10 C 0.115 3.885 11 N -0.289 5.289 12 C -0.054 4.054 13 C -0.054 4.054 14 N -0.273 5.273 15 N -0.076 5.076 16 C 0.110 3.890 17 C -0.080 4.080 18 C -0.136 4.136 19 C 0.174 3.826 20 N -0.753 5.753 21 C -0.242 4.242 22 H 0.089 0.911 23 C 0.005 3.995 24 N -0.934 5.934 25 Si 0.881 3.119 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.190 0.810 41 H 0.189 0.811 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.026 0.974 48 H 0.029 0.971 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.849 -2.490 -28.904 30.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.018 4.018 5 N -0.355 5.355 6 C 0.319 3.681 7 O -0.406 6.406 8 C -0.171 4.171 9 C -0.159 4.159 10 C -0.006 4.006 11 N -0.083 5.083 12 C -0.205 4.205 13 C -0.212 4.212 14 N -0.139 5.139 15 N -0.056 5.056 16 C -0.012 4.012 17 C -0.081 4.081 18 C -0.194 4.194 19 C 0.047 3.953 20 N -0.399 5.399 21 C -0.372 4.372 22 H 0.107 0.893 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.207 0.793 41 H 0.206 0.794 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.043 0.957 48 H 0.047 0.953 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.480 -1.994 -27.305 28.972 hybrid contribution -0.985 -1.755 -0.699 2.131 sum -10.465 -3.749 -28.004 30.129 Atomic orbital electron populations 1.21894 0.94069 1.02135 1.01852 1.22134 0.96094 0.99872 0.93637 0.89716 1.22506 0.86907 0.95399 0.96965 1.48920 1.12740 1.55811 1.18047 1.20055 0.80541 0.80142 0.87374 1.90795 1.40680 1.41538 1.67540 1.21495 0.97913 1.03182 0.94512 1.21629 0.97317 1.03070 0.93889 1.22198 0.77300 1.03146 0.97933 1.47549 1.08849 1.36794 1.15105 1.23700 0.98567 1.04672 0.93590 1.23654 0.92712 1.05316 0.99484 1.75169 1.21676 1.12376 1.04706 1.78396 0.87277 1.19786 1.20174 1.22622 1.00115 0.95761 0.82701 1.21840 0.95960 0.95517 0.94818 1.21900 0.96845 1.01088 0.99527 1.20617 0.93973 0.92814 0.87916 1.42732 1.58555 1.11715 1.26886 1.19020 1.19593 0.97529 1.01031 0.89326 1.24652 0.99457 0.97584 0.97355 1.69697 1.37288 1.36234 1.14986 0.86604 0.78237 0.86889 0.77130 1.20936 1.21700 1.20374 0.92131 0.91682 0.92922 0.90519 0.91040 0.88297 0.88719 0.90140 0.88744 0.87937 0.87512 0.79342 0.79428 0.91577 0.88730 0.92835 0.92013 0.91740 0.95657 0.95337 0.80598 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.93 37.16 0.29 -0.81 16 2 C -0.10 -0.98 3.30 -89.22 -0.29 -1.27 16 3 H 0.08 0.88 7.71 -51.93 -0.40 0.48 16 4 C 0.11 0.89 6.46 -2.41 -0.02 0.88 16 5 N -0.62 -7.87 3.31 -169.06 -0.56 -8.43 16 6 C 0.53 7.27 7.91 -10.99 -0.09 7.18 16 7 O -0.53 -10.14 16.25 5.55 0.09 -10.05 16 8 C -0.13 -1.01 4.68 -27.89 -0.13 -1.14 16 9 C -0.12 -1.08 4.63 -26.74 -0.12 -1.20 16 10 C 0.12 0.66 6.46 -4.04 -0.03 0.63 16 11 N -0.29 -2.67 3.44 -61.26 -0.21 -2.89 16 12 C -0.05 -0.38 11.57 -17.05 -0.20 -0.58 16 13 C -0.05 -0.49 12.05 -17.74 -0.21 -0.71 16 14 N -0.27 -3.70 12.41 30.24 0.38 -3.32 16 15 N -0.08 -1.03 12.91 60.35 0.78 -0.25 16 16 C 0.11 1.66 5.93 -2.19 -0.01 1.64 16 17 C -0.08 -1.12 0.74 -152.89 -0.11 -1.23 16 18 C -0.14 -1.79 7.11 37.15 0.26 -1.52 16 19 C 0.17 3.32 4.96 -4.04 -0.02 3.30 16 20 N -0.75 -18.00 4.60 -59.91 -0.28 -18.28 16 21 C -0.24 -7.02 10.47 -15.06 -0.16 -7.17 16 22 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -30.18 13.97 55.49 0.78 -29.41 16 25 Si 0.88 22.78 27.73 -169.99 -4.71 18.06 16 26 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 28 H -0.28 -6.59 6.52 56.52 0.37 -6.23 16 29 H 0.06 0.45 6.62 -51.93 -0.34 0.11 16 30 H 0.06 0.55 6.99 -51.93 -0.36 0.19 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.45 7.30 -51.93 -0.38 0.08 16 33 H 0.07 0.50 7.86 -51.93 -0.41 0.09 16 34 H 0.10 0.58 7.95 -51.93 -0.41 0.17 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.11 0.21 8.07 -51.93 -0.42 -0.21 16 40 H 0.19 0.47 8.06 -52.48 -0.42 0.05 16 41 H 0.19 1.03 8.06 -52.48 -0.42 0.60 16 42 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 43 H 0.09 1.84 6.96 -51.93 -0.36 1.48 16 44 H 0.05 0.56 6.68 -51.93 -0.35 0.21 16 45 H 0.06 0.98 6.75 -51.93 -0.35 0.63 16 46 H 0.06 0.81 6.89 -51.93 -0.36 0.45 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.36 8.42 3.85 -40.82 -0.16 8.26 16 50 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -39.78 395.91 -6.80 -46.58 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -8.10 Total: 3.96 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -0.93 Total: -1.95 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.88 Total: -62.57 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.71 Total: 18.06 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.78 -6.80 -46.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181703894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.851 kcal (2) G-P(sol) polarization free energy of solvation -39.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds