Wall clock time and date at job start Wed Apr 1 2020 00:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.30606 * 2 1 4 4 C 1.54384 * 110.34084 * 237.82541 * 2 1 3 5 5 N 1.48142 * 104.61833 * 217.15626 * 4 2 1 6 6 C 1.34779 * 127.83977 * 219.58602 * 5 4 2 7 7 O 1.21286 * 120.00040 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00201 * 0.02752 * 6 5 4 9 9 C 1.52992 * 109.47592 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 6 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 8 12 12 C 1.35311 * 125.86532 * 124.71073 * 11 10 9 13 13 C 1.35349 * 106.17207 * 179.90472 * 12 11 10 14 14 N 1.33767 * 106.49736 * 0.35700 * 13 12 11 15 15 N 1.28629 * 108.88484 * 359.77207 * 14 13 12 16 16 C 1.48150 * 104.32483 * 39.84845 * 5 4 2 17 17 C 1.54292 * 110.43038 * 122.23678 * 2 1 3 18 18 C 1.52994 * 110.34204 * 0.04588 * 17 2 1 19 19 C 1.52999 * 110.33755 * 237.78573 * 17 2 1 20 20 N 1.46502 * 109.46624 * 180.02562 * 19 17 2 21 21 C 1.36935 * 119.99999 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99994 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00363 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00442 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99714 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46988 * 90.00171 * 25 23 21 27 27 H 1.48496 * 109.47242 * 209.99870 * 25 23 21 28 28 H 1.48498 * 109.47571 * 330.00555 * 25 23 21 29 29 H 1.09000 * 109.46753 * 180.72045 * 1 2 3 30 30 H 1.09003 * 109.47114 * 300.71783 * 1 2 3 31 31 H 1.08993 * 109.47255 * 60.71932 * 1 2 3 32 32 H 1.08999 * 110.40770 * 98.37077 * 4 2 1 33 33 H 1.09007 * 110.41175 * 335.94289 * 4 2 1 34 34 H 1.09002 * 109.47210 * 59.99599 * 8 6 5 35 35 H 1.09001 * 109.46665 * 299.99857 * 8 6 5 36 36 H 1.09002 * 109.47103 * 59.99616 * 9 8 6 37 37 H 1.08998 * 109.46862 * 300.00428 * 9 8 6 38 38 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 39 39 H 1.09001 * 109.46832 * 299.99974 * 10 9 8 40 40 H 1.08005 * 126.91021 * 0.02578 * 12 11 10 41 41 H 1.08007 * 126.75155 * 180.12795 * 13 12 11 42 42 H 1.08996 * 110.40814 * 78.93279 * 16 5 4 43 43 H 1.08994 * 110.40721 * 201.37090 * 16 5 4 44 44 H 1.09000 * 109.47361 * 59.99986 * 18 17 2 45 45 H 1.09002 * 109.46883 * 180.02562 * 18 17 2 46 46 H 1.09005 * 109.47001 * 299.99496 * 18 17 2 47 47 H 1.08998 * 109.47498 * 299.99941 * 19 17 2 48 48 H 1.08998 * 109.47579 * 60.00232 * 19 17 2 49 49 H 0.97002 * 120.00061 * 0.02562 * 20 19 17 50 50 H 0.96998 * 120.00041 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2679 -1.4789 -0.7248 6 6 4.4436 -1.6617 -1.3579 7 8 5.3391 -2.2694 -0.8104 8 6 4.6456 -1.1110 -2.7461 9 6 6.0554 -1.4543 -3.2309 10 6 6.2602 -0.8957 -4.6405 11 7 7.6106 -1.2240 -5.1044 12 6 7.9185 -1.8817 -6.2461 13 6 9.2690 -1.9656 -6.2803 14 7 9.7148 -1.3701 -5.1686 15 7 8.7075 -0.9413 -4.4933 16 6 2.8814 -1.9461 0.6269 17 6 2.0686 -0.7713 1.2230 18 6 0.9100 -1.3052 2.0675 19 6 2.9709 0.1320 2.0661 20 7 3.4716 -0.6186 3.2203 21 6 4.3046 -0.0122 4.1224 22 1 4.5920 1.0196 3.9831 23 6 4.7794 -0.7234 5.2157 24 7 5.5796 -0.1404 6.0830 25 14 4.2816 -2.5076 5.4570 26 1 5.2591 -3.3912 4.7719 27 1 4.2606 -2.8239 6.9077 28 1 2.9297 -2.7264 4.8829 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3633 0.5250 0.8835 31 1 -0.3633 0.5026 -0.8963 32 1 2.3383 -0.0776 -2.0213 33 1 1.3241 -1.4858 -1.5797 34 1 4.5212 -0.0282 -2.7291 35 1 3.9116 -1.5505 -3.4215 36 1 6.1803 -2.5370 -3.2478 37 1 6.7891 -1.0145 -2.5552 38 1 6.1352 0.1870 -4.6240 39 1 5.5266 -1.3360 -5.3158 40 1 7.2261 -2.2614 -6.9829 41 1 9.8686 -2.4264 -7.0514 42 1 2.2641 -2.8417 0.5574 43 1 3.7683 -2.1405 1.2298 44 1 0.2999 -1.9772 1.4639 45 1 1.3060 -1.8465 2.9267 46 1 0.2987 -0.4718 2.4138 47 1 3.8119 0.4718 1.4616 48 1 2.4007 0.9940 2.4124 49 1 3.2137 -1.5453 3.3452 50 1 5.9111 -0.6374 6.8472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181703894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:09 Heat of formation + Delta-G solvation = 49.620509 kcal Electronic energy + Delta-G solvation = -29220.764513 eV Core-core repulsion = 25284.588331 eV Total energy + Delta-G solvation = -3936.176182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.15018 -41.46488 -39.67231 -36.80657 -36.64526 -34.70699 -33.60617 -33.41649 -31.93222 -31.47330 -29.26352 -28.20140 -27.05222 -26.64139 -24.91011 -24.09200 -23.44496 -22.38958 -22.00915 -20.33932 -20.17493 -19.29310 -18.54498 -17.88319 -17.42987 -16.99954 -16.65770 -16.53146 -16.36090 -16.03417 -15.75457 -15.38790 -15.17350 -14.93879 -14.83742 -14.64588 -14.46493 -13.94169 -13.61469 -13.56650 -13.29162 -13.08166 -13.06547 -12.95157 -12.82226 -12.65469 -12.62913 -12.54814 -12.26985 -12.14617 -12.03370 -11.92526 -11.76936 -11.60776 -11.33052 -11.18506 -11.09874 -11.06319 -10.90345 -10.31482 -9.72457 -9.35223 -8.09871 -5.42251 0.70965 1.26341 1.33690 1.38645 1.51275 1.62897 1.65884 2.01365 2.40635 3.21436 3.31357 3.47126 3.56372 3.64537 3.72367 3.73356 3.84373 3.91935 4.17713 4.18192 4.22594 4.31249 4.32589 4.36074 4.39274 4.39863 4.53699 4.62331 4.69243 4.71579 4.78015 4.80214 4.84753 4.92933 4.99017 4.99440 5.04223 5.12176 5.16239 5.23214 5.30740 5.33026 5.40468 5.46203 5.66487 5.68908 5.73722 6.14614 6.62144 7.01274 7.17215 7.56497 7.77873 7.96201 9.12142 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.002734 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.004086 B =10239.963075 C =12063.546081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 H 0.078 0.922 4 C 0.106 3.894 5 N -0.622 5.622 6 C 0.514 3.486 7 O -0.604 6.604 8 C -0.114 4.114 9 C -0.115 4.115 10 C 0.115 3.885 11 N -0.289 5.289 12 C -0.029 4.029 13 C -0.074 4.074 14 N -0.324 5.324 15 N -0.139 5.139 16 C 0.106 3.894 17 C -0.073 4.073 18 C -0.133 4.133 19 C 0.171 3.829 20 N -0.754 5.754 21 C -0.233 4.233 22 H 0.053 0.947 23 C -0.064 4.064 24 N -0.983 5.983 25 Si 0.949 3.051 26 H -0.290 1.290 27 H -0.288 1.288 28 H -0.244 1.244 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.119 0.881 39 H 0.163 0.837 40 H 0.244 0.756 41 H 0.216 0.784 42 H 0.088 0.912 43 H 0.037 0.963 44 H 0.090 0.910 45 H 0.030 0.970 46 H 0.070 0.930 47 H 0.002 0.998 48 H 0.029 0.971 49 H 0.365 0.635 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.625 -3.505 -33.598 37.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.097 0.903 4 C -0.015 4.015 5 N -0.355 5.355 6 C 0.306 3.694 7 O -0.485 6.485 8 C -0.154 4.154 9 C -0.154 4.154 10 C -0.004 4.004 11 N -0.083 5.083 12 C -0.181 4.181 13 C -0.232 4.232 14 N -0.189 5.189 15 N -0.118 5.118 16 C -0.017 4.017 17 C -0.075 4.075 18 C -0.190 4.190 19 C 0.045 3.955 20 N -0.400 5.400 21 C -0.364 4.364 22 H 0.071 0.929 23 C -0.256 4.256 24 N -0.634 5.634 25 Si 0.776 3.224 26 H -0.216 1.216 27 H -0.214 1.214 28 H -0.168 1.168 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.137 0.863 39 H 0.180 0.820 40 H 0.261 0.739 41 H 0.232 0.768 42 H 0.106 0.894 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.020 0.980 48 H 0.047 0.953 49 H 0.199 0.801 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.339 -2.960 -32.031 35.219 hybrid contribution 0.506 -1.365 0.698 1.614 sum -13.833 -4.325 -31.333 34.523 Atomic orbital electron populations 1.21868 0.91565 1.03129 1.02839 1.22149 0.98010 0.99078 0.91983 0.90312 1.22863 0.85504 0.96299 0.96840 1.49101 1.13891 1.55465 1.17045 1.21294 0.79684 0.79118 0.89342 1.90764 1.43119 1.44966 1.69676 1.21548 0.98029 1.04682 0.91099 1.21470 0.97130 1.01399 0.95405 1.22533 0.76747 1.04552 0.96607 1.47887 1.09015 1.36053 1.15382 1.24536 0.98645 1.01906 0.92987 1.24331 0.94465 1.05343 0.99070 1.75076 1.23073 1.14052 1.06709 1.78336 0.88716 1.22667 1.22050 1.22509 0.98155 0.97197 0.83862 1.21753 0.95113 0.94745 0.95845 1.21905 0.96629 1.01690 0.98772 1.20786 0.94092 0.93810 0.86793 1.42741 1.57801 1.12134 1.27304 1.19018 1.19502 0.96200 1.01698 0.92939 1.25499 1.00087 1.02623 0.97373 1.69878 1.39291 1.38320 1.15930 0.85495 0.79305 0.80498 0.77062 1.21650 1.21392 1.16791 0.91016 0.92627 0.90190 0.86751 0.87833 0.85568 0.83484 0.92398 0.93861 0.86262 0.81961 0.73942 0.76751 0.89382 0.94391 0.89160 0.95112 0.91069 0.98014 0.95282 0.80068 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 7.93 71.98 0.57 -0.84 16 2 C -0.09 -1.50 3.30 -9.88 -0.03 -1.54 16 3 H 0.08 1.40 7.71 -2.39 -0.02 1.38 16 4 C 0.11 1.23 6.46 86.53 0.56 1.79 16 5 N -0.62 -14.53 3.31 -807.16 -2.67 -17.20 16 6 C 0.51 13.80 7.91 87.66 0.69 14.49 16 7 O -0.60 -24.73 16.25 -3.05 -0.05 -24.78 16 8 C -0.11 -1.38 4.68 29.84 0.14 -1.24 16 9 C -0.11 -1.97 4.63 30.59 0.14 -1.83 16 10 C 0.11 0.91 6.46 86.38 0.56 1.47 16 11 N -0.29 -4.90 3.44 -347.72 -1.20 -6.09 16 12 C -0.03 -0.32 11.57 83.49 0.97 0.65 16 13 C -0.07 -1.26 12.05 83.73 1.01 -0.25 16 14 N -0.32 -9.18 12.41 -58.26 -0.72 -9.90 16 15 N -0.14 -3.91 12.91 37.02 0.48 -3.44 16 16 C 0.11 3.12 5.93 86.67 0.51 3.64 16 17 C -0.07 -1.95 0.74 -51.13 -0.04 -1.99 16 18 C -0.13 -3.15 7.11 71.98 0.51 -2.64 16 19 C 0.17 6.73 4.96 86.38 0.43 7.16 16 20 N -0.75 -37.37 4.60 -343.45 -1.58 -38.95 16 21 C -0.23 -14.23 10.47 84.03 0.88 -13.35 16 22 H 0.05 3.51 8.06 -2.91 -0.02 3.48 16 23 C -0.06 -4.05 5.50 84.86 0.47 -3.58 16 24 N -0.98 -66.57 13.97 21.65 0.30 -66.27 16 25 Si 0.95 48.58 27.73 68.60 1.90 50.48 16 26 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 27 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 28 H -0.24 -10.98 6.52 99.48 0.65 -10.33 16 29 H 0.07 0.62 6.62 -2.39 -0.02 0.60 16 30 H 0.05 0.71 6.99 -2.39 -0.02 0.70 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.11 0.55 7.30 -2.39 -0.02 0.53 16 33 H 0.10 0.67 7.86 -2.38 -0.02 0.65 16 34 H 0.13 0.90 7.95 -2.39 -0.02 0.88 16 35 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 37 H 0.04 1.18 8.08 -2.39 -0.02 1.16 16 38 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.16 -0.48 8.07 -2.39 -0.02 -0.50 16 40 H 0.24 -0.31 8.06 -2.91 -0.02 -0.34 16 41 H 0.22 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.09 2.17 7.84 -2.39 -0.02 2.15 16 43 H 0.04 1.55 6.96 -2.39 -0.02 1.53 16 44 H 0.09 1.49 6.68 -2.39 -0.02 1.48 16 45 H 0.03 0.91 6.75 -2.39 -0.02 0.90 16 46 H 0.07 1.60 6.89 -2.38 -0.02 1.58 16 47 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 48 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.37 17.37 3.85 -92.71 -0.36 17.01 16 50 H 0.26 16.61 8.31 -92.71 -0.77 15.83 16 Total: -1.00 -102.36 395.91 4.35 -98.01 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.52 Total: 16.19 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 7.37 Total: 1.94 kcal Atomic # 7 Polarization: -136.46 SS G_CDS: -5.39 Total: -141.85 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 1.90 Total: 50.48 kcal Total: -102.36 4.35 -98.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181703894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.634 kcal (2) G-P(sol) polarization free energy of solvation -102.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds