Wall clock time and date at job start Wed Apr 1 2020 00:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.30192 * 2 1 4 4 C 1.54392 * 110.42978 * 237.76833 * 2 1 3 5 5 N 1.48142 * 104.62045 * 264.94834 * 4 2 1 6 6 C 1.34781 * 127.83940 * 140.39444 * 5 4 2 7 7 O 1.21282 * 119.99713 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.99915 * 359.97374 * 6 5 4 9 9 C 1.52994 * 109.46893 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46893 * 179.97438 * 9 8 6 11 11 C 1.35350 * 126.75095 * 125.00264 * 10 9 8 12 12 N 1.35307 * 106.17926 * 180.02562 * 11 10 9 13 13 C 1.46502 * 125.87299 * 180.02562 * 12 11 10 14 14 N 1.28714 * 108.26164 * 359.97438 * 12 11 10 15 15 N 1.28639 * 110.17731 * 359.72509 * 14 12 11 16 16 C 1.48151 * 104.32269 * 320.41644 * 5 4 2 17 17 C 1.54281 * 110.34640 * 122.18215 * 2 1 3 18 18 C 1.52998 * 110.34044 * 359.97438 * 17 2 1 19 19 C 1.53004 * 110.34242 * 237.84606 * 17 2 1 20 20 N 1.46499 * 109.47198 * 179.97438 * 19 17 2 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47144 * 90.00258 * 25 23 21 27 27 H 1.48500 * 109.47140 * 210.00775 * 25 23 21 28 28 H 1.48502 * 109.46967 * 330.00206 * 25 23 21 29 29 H 1.09003 * 109.47269 * 297.81861 * 1 2 3 30 30 H 1.09000 * 109.47752 * 57.82530 * 1 2 3 31 31 H 1.09009 * 109.46777 * 177.82277 * 1 2 3 32 32 H 1.08998 * 110.40822 * 23.73899 * 4 2 1 33 33 H 1.09006 * 110.40744 * 146.15990 * 4 2 1 34 34 H 1.09000 * 109.46967 * 300.00445 * 8 6 5 35 35 H 1.09006 * 109.46671 * 59.99936 * 8 6 5 36 36 H 1.09000 * 109.47803 * 300.00087 * 9 8 6 37 37 H 1.08999 * 109.47028 * 60.00607 * 9 8 6 38 38 H 1.08001 * 126.91006 * 359.96636 * 11 10 9 39 39 H 1.08997 * 109.47168 * 89.99522 * 13 12 11 40 40 H 1.08997 * 109.47515 * 209.99803 * 13 12 11 41 41 H 1.08999 * 109.46969 * 329.99990 * 13 12 11 42 42 H 1.08997 * 110.40503 * 280.79895 * 16 5 4 43 43 H 1.08992 * 110.40449 * 158.37101 * 16 5 4 44 44 H 1.09003 * 109.47538 * 298.52858 * 18 17 2 45 45 H 1.09002 * 109.47478 * 58.53025 * 18 17 2 46 46 H 1.09006 * 109.47050 * 178.52540 * 18 17 2 47 47 H 1.09009 * 109.46730 * 59.99577 * 19 17 2 48 48 H 1.08998 * 109.46846 * 300.00121 * 19 17 2 49 49 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 50 50 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0689 -0.7716 -1.2239 5 7 2.3177 -2.1429 -0.7214 6 6 2.0831 -3.3102 -1.3531 7 8 2.3434 -4.3598 -0.8040 8 6 1.4973 -3.3110 -2.7416 9 6 1.3334 -4.7533 -3.2250 10 6 0.7471 -4.7542 -4.6133 11 6 1.2649 -5.3537 -5.7108 12 7 0.4071 -5.0913 -6.7238 13 6 0.5539 -5.5396 -8.1108 14 7 -0.5606 -4.3811 -6.2592 15 7 -0.3906 -4.1678 -5.0020 16 6 2.8825 -1.9401 0.6331 17 6 2.0664 -0.7705 1.2243 18 6 0.9062 -1.3012 2.0688 19 6 2.9672 0.1333 2.0686 20 7 3.4649 -0.6162 3.2248 21 6 4.2911 -0.0073 4.1314 22 1 4.5793 1.0242 3.9916 23 6 4.7580 -0.7157 5.2300 24 7 4.4070 -1.9728 5.4001 25 14 5.8856 0.1147 6.4663 26 1 5.0696 0.7471 7.5336 27 1 6.7903 -0.8971 7.0687 28 1 6.6933 1.1543 5.7792 29 1 -0.3634 0.4796 0.9089 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0270 -0.0390 32 1 1.3253 -0.7878 -2.0206 33 1 2.9968 -0.3224 -1.5780 34 1 0.5243 -2.8199 -2.7258 35 1 2.1639 -2.7751 -3.4174 36 1 2.3065 -5.2441 -3.2409 37 1 0.6671 -5.2895 -2.5493 38 1 2.1794 -5.9255 -5.7668 39 1 0.0671 -6.5071 -8.2334 40 1 0.0912 -4.8128 -8.7785 41 1 1.6127 -5.6325 -8.3525 42 1 3.9373 -1.6734 0.5690 43 1 2.7526 -2.8379 1.2373 44 1 0.3111 -0.4647 2.4352 45 1 0.2806 -1.9524 1.4584 46 1 1.3005 -1.8646 2.9146 47 1 2.3962 0.9955 2.4133 48 1 3.8091 0.4727 1.4653 49 1 3.2057 -1.5424 3.3505 50 1 4.7337 -2.4679 6.1676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183627843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:07 Heat of formation + Delta-G solvation = 73.810981 kcal Electronic energy + Delta-G solvation = -29038.329759 eV Core-core repulsion = 25103.202555 eV Total energy + Delta-G solvation = -3935.127204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.56743 -40.25697 -38.32794 -35.46406 -34.75542 -33.70185 -33.03310 -31.45611 -30.58265 -29.53206 -28.35877 -27.42747 -26.06042 -25.40002 -24.33330 -23.08820 -22.42397 -21.26854 -21.03097 -19.10091 -18.38038 -17.66267 -17.20887 -16.94481 -16.60977 -16.10255 -15.32596 -15.27250 -14.88182 -14.41807 -14.30447 -14.05469 -13.92026 -13.80684 -13.43528 -13.25107 -13.12266 -12.97409 -12.76694 -12.49162 -12.40474 -12.12219 -11.93230 -11.80593 -11.52107 -11.43796 -11.20161 -11.16941 -10.95550 -10.93614 -10.77968 -10.39219 -10.36851 -10.25097 -10.14949 -9.84022 -9.70979 -9.57235 -9.40530 -8.83884 -8.49071 -6.87377 -5.71897 -3.00553 1.23955 1.98117 2.21560 2.78647 3.11723 3.46464 3.51324 3.53296 3.92135 4.16398 4.39791 4.43019 4.59626 4.66230 4.68161 4.71432 4.72953 4.91032 4.95556 5.04071 5.09899 5.31805 5.37609 5.44694 5.49953 5.55773 5.58364 5.62355 5.71195 5.75154 5.86596 5.89871 5.98251 6.01635 6.07140 6.14544 6.17239 6.18591 6.24855 6.31009 6.34820 6.50487 6.66171 6.74731 6.83345 6.93506 7.73702 7.75341 8.19056 8.31550 8.46792 9.57997 10.16017 10.50511 11.50786 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.002070 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.787835 B =13524.401962 C =14134.944536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.087 0.913 4 C 0.104 3.896 5 N -0.620 5.620 6 C 0.532 3.468 7 O -0.543 6.543 8 C -0.128 4.128 9 C -0.017 4.017 10 C -0.015 4.015 11 C -0.049 4.049 12 N -0.297 5.297 13 C 0.082 3.918 14 N -0.088 5.088 15 N -0.263 5.263 16 C 0.119 3.881 17 C -0.075 4.075 18 C -0.132 4.132 19 C 0.168 3.832 20 N -0.730 5.730 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.191 0.809 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.022 0.978 48 H 0.020 0.980 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.866 -4.147 -28.374 29.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.105 0.895 4 C -0.019 4.019 5 N -0.354 5.354 6 C 0.321 3.679 7 O -0.421 6.421 8 C -0.168 4.168 9 C -0.057 4.057 10 C -0.153 4.153 11 C -0.199 4.199 12 N -0.090 5.090 13 C -0.060 4.060 14 N -0.068 5.068 15 N -0.130 5.130 16 C -0.002 4.002 17 C -0.076 4.076 18 C -0.189 4.189 19 C 0.040 3.960 20 N -0.375 5.375 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.208 0.792 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.040 0.960 48 H 0.037 0.963 49 H 0.220 0.780 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.960 -4.002 -28.442 30.088 hybrid contribution 1.659 -0.379 0.773 1.869 sum -7.301 -4.381 -27.670 28.950 Atomic orbital electron populations 1.21910 0.94514 1.01929 1.01566 1.22135 0.96286 0.99469 0.93868 0.89486 1.22500 1.00451 0.82028 0.96942 1.49040 1.62931 1.05317 1.18129 1.20188 0.78099 0.82177 0.87472 1.90725 1.52979 1.30418 1.67931 1.21537 1.03086 0.98585 0.93603 1.19622 1.01466 0.96366 0.88200 1.22070 0.94459 1.01207 0.97523 1.23438 1.00478 1.08167 0.87868 1.47236 1.16137 1.34832 1.10842 1.22264 1.04882 1.02236 0.76594 1.78320 1.11166 1.11494 1.05807 1.75062 1.15803 1.19696 1.02446 1.22463 0.97120 0.98937 0.81727 1.21698 0.96221 0.95183 0.94500 1.21859 0.96851 1.00690 0.99487 1.20714 0.93633 0.92986 0.88668 1.42408 1.57589 1.12875 1.24659 1.19208 1.20712 0.95716 1.01422 0.91262 1.24735 1.01194 0.96099 0.98939 1.69663 1.49121 1.08457 1.30766 0.86204 0.80352 0.78126 0.81577 1.21806 1.21838 1.20846 0.91889 0.93159 0.92368 0.90437 0.91043 0.88241 0.89231 0.89230 0.89118 0.79154 0.89079 0.88032 0.88262 0.90578 0.89706 0.92494 0.93336 0.91534 0.96027 0.96253 0.78020 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 7.93 37.16 0.29 -1.27 16 2 C -0.10 -1.19 3.30 -89.22 -0.29 -1.49 16 3 H 0.09 1.00 7.71 -51.93 -0.40 0.60 16 4 C 0.10 1.16 6.47 -2.41 -0.02 1.14 16 5 N -0.62 -8.78 3.32 -169.31 -0.56 -9.34 16 6 C 0.53 7.71 7.91 -10.98 -0.09 7.62 16 7 O -0.54 -9.96 16.25 5.56 0.09 -9.87 16 8 C -0.13 -1.36 4.66 -27.89 -0.13 -1.49 16 9 C -0.02 -0.17 5.08 -27.89 -0.14 -0.31 16 10 C -0.01 -0.15 6.50 -82.78 -0.54 -0.69 16 11 C -0.05 -0.36 11.54 -17.05 -0.20 -0.56 16 12 N -0.30 -2.21 3.74 -68.06 -0.25 -2.47 16 13 C 0.08 0.17 11.39 59.85 0.68 0.85 16 14 N -0.09 -0.99 13.17 60.35 0.79 -0.20 16 15 N -0.26 -3.27 12.40 33.29 0.41 -2.86 16 16 C 0.12 2.03 5.71 -2.41 -0.01 2.01 16 17 C -0.07 -1.19 0.73 -153.11 -0.11 -1.30 16 18 C -0.13 -2.17 7.07 37.16 0.26 -1.91 16 19 C 0.17 3.27 4.87 -4.04 -0.02 3.26 16 20 N -0.73 -18.19 5.13 -59.90 -0.31 -18.50 16 21 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 25 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.06 0.72 6.84 -51.93 -0.36 0.36 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.69 6.76 -51.92 -0.35 0.34 16 32 H 0.08 0.71 7.03 -51.93 -0.36 0.34 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.04 7.95 -51.93 -0.41 0.63 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.19 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 40 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 41 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 42 H 0.08 1.38 7.83 -51.93 -0.41 0.97 16 43 H 0.08 1.67 7.60 -51.93 -0.39 1.27 16 44 H 0.06 0.89 6.89 -51.93 -0.36 0.53 16 45 H 0.05 0.74 6.71 -51.93 -0.35 0.40 16 46 H 0.07 1.29 6.78 -51.93 -0.35 0.94 16 47 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 49 H 0.39 10.18 6.18 -40.82 -0.25 9.92 16 50 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 400.35 15.07 6.03 6.03 Total: -1.00 -36.29 400.35 -6.83 -43.12 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.19 Total: 5.66 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.56 Total: -1.44 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.81 Total: -61.06 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.29 -6.83 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183627843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.931 kcal (2) G-P(sol) polarization free energy of solvation -36.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds