Wall clock time and date at job start Wed Apr 1 2020 00:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52551 * 2 1 4 4 C 1.53195 * 109.49895 * 120.07755 * 2 1 3 5 5 N 1.46924 * 108.77302 * 65.31538 * 4 2 1 6 6 C 1.34774 * 120.63037 * 233.58319 * 5 4 2 7 7 O 1.21279 * 120.00260 * 0.03002 * 6 5 4 8 8 C 1.50697 * 120.00034 * 180.02562 * 6 5 4 9 9 C 1.53008 * 109.47262 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47362 * 180.02562 * 9 8 6 11 11 N 1.46497 * 109.47556 * 180.02562 * 10 9 8 12 12 C 1.35306 * 125.87163 * 124.99786 * 11 10 9 13 13 C 1.35353 * 106.17589 * 180.02562 * 12 11 10 14 14 N 1.33769 * 106.49416 * 0.02562 * 13 12 11 15 15 N 1.28631 * 108.89098 * 359.73189 * 14 13 12 16 16 C 1.46925 * 118.73966 * 53.61411 * 5 4 2 17 17 C 1.53192 * 108.77313 * 306.38559 * 16 5 4 18 18 C 1.53039 * 109.31131 * 54.63670 * 17 16 5 19 19 H 1.09001 * 109.46007 * 58.64375 * 18 17 16 20 20 C 1.53004 * 109.45895 * 178.61251 * 18 17 16 21 21 N 1.46499 * 109.47198 * 295.00122 * 20 18 17 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31624 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47201 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47080 * 120.00466 * 26 24 22 29 29 H 1.48506 * 109.47018 * 240.00565 * 26 24 22 30 30 H 1.08996 * 109.46979 * 180.08504 * 1 2 3 31 31 H 1.08999 * 109.46796 * 300.08370 * 1 2 3 32 32 H 1.09000 * 109.47008 * 60.08554 * 1 2 3 33 33 H 1.09000 * 109.58854 * 305.53079 * 4 2 1 34 34 H 1.09000 * 109.58828 * 185.10430 * 4 2 1 35 35 H 1.09003 * 109.47627 * 300.00374 * 8 6 5 36 36 H 1.09005 * 109.47162 * 60.00685 * 8 6 5 37 37 H 1.08997 * 109.47248 * 300.00373 * 9 8 6 38 38 H 1.09005 * 109.46716 * 60.00115 * 9 8 6 39 39 H 1.08997 * 109.47240 * 300.00373 * 10 9 8 40 40 H 1.09007 * 109.47108 * 59.99809 * 10 9 8 41 41 H 1.08001 * 126.90971 * 359.97438 * 12 11 10 42 42 H 1.08004 * 126.75085 * 180.02562 * 13 12 11 43 43 H 1.09005 * 109.58760 * 186.60248 * 16 5 4 44 44 H 1.08996 * 109.70744 * 66.24341 * 16 5 4 45 45 H 1.08998 * 109.50072 * 294.68866 * 17 16 5 46 46 H 1.09000 * 109.49780 * 174.59014 * 17 16 5 47 47 H 1.09009 * 109.46730 * 174.99909 * 20 18 17 48 48 H 1.08998 * 109.46846 * 55.00454 * 20 18 17 49 49 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 50 50 H 0.96998 * 119.99409 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7237 1.2496 5 7 1.6516 -2.1381 1.1697 6 6 0.9749 -2.7219 2.1784 7 8 0.6815 -2.0789 3.1640 8 6 0.5826 -4.1737 2.0817 9 6 -0.1703 -4.5842 3.3489 10 6 -0.5679 -6.0583 3.2511 11 7 -1.2893 -6.4512 4.4641 12 6 -2.5200 -7.0118 4.5081 13 6 -2.7982 -7.2082 5.8181 14 7 -1.7382 -6.7635 6.5023 15 7 -0.8595 -6.3262 5.6709 16 6 2.0141 -2.9040 -0.0306 17 6 1.5030 -2.1559 -1.2659 18 6 2.0408 -0.7232 -1.2483 19 1 3.1306 -0.7445 -1.2350 20 6 1.5607 0.0168 -2.4984 21 7 2.1480 -0.6032 -3.6887 22 6 1.8642 -0.1036 -4.9317 23 1 1.2038 0.7448 -5.0348 24 6 2.4253 -0.6874 -6.0591 25 7 3.2298 -1.7216 -5.9334 26 14 2.0375 -0.0063 -7.7547 27 1 1.1140 1.1492 -7.6247 28 1 3.2946 0.4365 -8.4097 29 1 1.3961 -1.0630 -8.5778 30 1 -0.3633 -1.0276 0.0015 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.6008 -0.2730 2.1389 34 1 3.1275 -0.6462 1.2981 35 1 -0.0608 -4.3194 1.2140 36 1 1.4784 -4.7859 1.9766 37 1 0.4728 -4.4386 4.2169 38 1 -1.0661 -3.9720 3.4536 39 1 -1.2108 -6.2044 2.3831 40 1 0.3281 -6.6702 3.1465 41 1 -3.1533 -7.2531 3.6672 42 1 -3.6988 -7.6393 6.2299 43 1 1.5554 -3.8919 0.0140 44 1 3.0977 -3.0065 -0.0878 45 1 0.4133 -2.1355 -1.2539 46 1 1.8481 -2.6630 -2.1669 47 1 1.8686 1.0611 -2.4431 48 1 0.4738 -0.0388 -2.5585 49 1 2.7414 -1.3649 -3.5960 50 1 3.6216 -2.1297 -6.7213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184586022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:04 Heat of formation + Delta-G solvation = 64.058649 kcal Electronic energy + Delta-G solvation = -28802.125796 eV Core-core repulsion = 24866.575699 eV Total energy + Delta-G solvation = -3935.550097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.53547 -40.56553 -38.33345 -36.20796 -35.02311 -33.61430 -32.86756 -31.77455 -31.33619 -30.38395 -28.48064 -27.09702 -26.40417 -23.98390 -23.43390 -23.05390 -22.88073 -21.60062 -21.29882 -19.83505 -18.45210 -18.03200 -17.35995 -16.92124 -16.72295 -16.13676 -15.80715 -15.37612 -15.09205 -15.00909 -14.54325 -14.40874 -14.09649 -13.88949 -13.71364 -13.63441 -13.02795 -12.96303 -12.69422 -12.61174 -12.48324 -12.28875 -12.15596 -11.93991 -11.62831 -11.42169 -11.39573 -11.17775 -11.10118 -10.98162 -10.83128 -10.45350 -10.39932 -10.30610 -10.23452 -10.01153 -9.82421 -9.71321 -9.69178 -8.91643 -8.65626 -6.95904 -5.82350 -3.10149 1.27655 1.95939 2.28915 2.48063 2.87577 3.38853 3.45205 3.46917 3.90600 4.09140 4.20113 4.38012 4.53984 4.59305 4.65505 4.67757 4.75216 4.80629 4.89522 4.92306 4.96987 5.06986 5.07889 5.19727 5.30340 5.40056 5.48688 5.52838 5.57297 5.67597 5.74002 5.74368 5.80014 5.82488 5.85510 5.98809 6.03151 6.15737 6.21649 6.23169 6.31790 6.39894 6.42876 6.60510 6.76108 6.88477 7.29993 7.66075 8.03560 8.20637 8.37284 9.48589 10.06610 10.41137 11.40682 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.001950 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.517262 B =14353.692873 C =15165.655694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.604 5.604 6 C 0.515 3.485 7 O -0.545 6.545 8 C -0.139 4.139 9 C -0.117 4.117 10 C 0.113 3.887 11 N -0.288 5.288 12 C -0.051 4.051 13 C -0.055 4.055 14 N -0.275 5.275 15 N -0.081 5.081 16 C 0.104 3.896 17 C -0.128 4.128 18 C -0.089 4.089 19 H 0.071 0.929 20 C 0.158 3.842 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.191 0.809 42 H 0.189 0.811 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.017 0.983 48 H 0.021 0.979 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 -10.042 17.764 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.006 4.006 5 N -0.337 5.337 6 C 0.303 3.697 7 O -0.423 6.423 8 C -0.179 4.179 9 C -0.156 4.156 10 C -0.008 4.008 11 N -0.082 5.082 12 C -0.202 4.202 13 C -0.212 4.212 14 N -0.141 5.141 15 N -0.061 5.061 16 C -0.018 4.018 17 C -0.166 4.166 18 C -0.108 4.108 19 H 0.090 0.910 20 C 0.030 3.970 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.208 0.792 42 H 0.206 0.794 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.035 0.965 48 H 0.039 0.961 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.394 -9.112 19.030 22.357 hybrid contribution -0.831 -0.293 -2.090 2.268 sum -8.225 -9.405 16.940 21.049 Atomic orbital electron populations 1.21847 0.94945 1.01815 1.01473 1.21472 0.96616 0.99527 0.94198 0.90048 1.21684 0.99418 0.80272 0.99214 1.48114 1.55739 1.11730 1.18163 1.20412 0.77543 0.89202 0.82513 1.90709 1.54998 1.65466 1.31161 1.21594 1.02383 0.94466 0.99472 1.21601 1.02437 0.92445 0.99081 1.22231 0.98091 0.98089 0.82377 1.47532 1.12984 1.39517 1.08186 1.23740 0.89649 1.05653 1.01196 1.23651 1.00722 1.06313 0.90495 1.75140 1.00404 1.12896 1.25621 1.78340 1.21827 1.19480 0.86436 1.21897 1.00709 0.94828 0.84404 1.21972 1.01328 0.96137 0.97145 1.21303 1.00280 0.94645 0.94529 0.91031 1.20717 0.95901 0.94682 0.85652 1.42385 1.56868 1.37481 1.00885 1.19277 1.22849 1.10834 0.83872 0.91232 1.24723 1.00077 0.98436 0.97831 1.69660 1.35666 1.24527 1.28465 0.86132 0.77427 0.78023 0.84709 1.20597 1.21882 1.21896 0.92735 0.93370 0.91953 0.89200 0.91549 0.88274 0.88236 0.89125 0.90180 0.87318 0.87927 0.79235 0.79396 0.90015 0.90998 0.91380 0.89361 0.96499 0.96090 0.78334 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.38 37.16 0.31 -1.46 16 2 C -0.10 -1.20 2.72 -90.50 -0.25 -1.45 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.34 5.83 -3.71 -0.02 1.32 16 5 N -0.60 -6.50 2.41 -172.77 -0.42 -6.91 16 6 C 0.52 5.72 7.70 -10.99 -0.08 5.64 16 7 O -0.55 -8.15 15.39 5.56 0.09 -8.07 16 8 C -0.14 -0.92 4.05 -27.88 -0.11 -1.04 16 9 C -0.12 -0.87 4.63 -26.73 -0.12 -0.99 16 10 C 0.11 0.56 6.45 -4.05 -0.03 0.53 16 11 N -0.29 -2.38 3.44 -61.27 -0.21 -2.59 16 12 C -0.05 -0.33 11.57 -17.05 -0.20 -0.53 16 13 C -0.05 -0.45 12.05 -17.74 -0.21 -0.66 16 14 N -0.27 -3.34 12.41 30.24 0.38 -2.96 16 15 N -0.08 -0.96 12.92 60.35 0.78 -0.18 16 16 C 0.10 1.01 6.34 -3.71 -0.02 0.98 16 17 C -0.13 -1.63 4.91 -26.61 -0.13 -1.76 16 18 C -0.09 -1.27 1.96 -90.58 -0.18 -1.44 16 19 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 20 C 0.16 2.96 5.18 -4.04 -0.02 2.94 16 21 N -0.73 -17.45 5.32 -59.90 -0.32 -17.77 16 22 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 26 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H 0.05 0.68 5.97 -51.93 -0.31 0.37 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.81 6.58 -51.93 -0.34 0.47 16 33 H 0.09 1.12 7.01 -51.93 -0.36 0.76 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.48 7.69 -51.93 -0.40 0.08 16 36 H 0.10 0.47 7.94 -51.93 -0.41 0.06 16 37 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.11 0.21 8.07 -51.93 -0.42 -0.20 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.19 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.19 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.89 6.34 -51.93 -0.33 0.56 16 46 H 0.09 1.33 7.15 -51.93 -0.37 0.95 16 47 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 48 H 0.02 0.40 6.74 -51.93 -0.35 0.05 16 49 H 0.38 9.47 6.85 -40.82 -0.28 9.19 16 50 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -35.49 394.79 -7.44 -42.93 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.08 Total: 4.26 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.31 Total: -5.01 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.93 Total: -56.94 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.49 -7.44 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184586022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.990 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds