Wall clock time and date at job start Wed Apr 1 2020 00:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52551 * 2 1 4 4 C 1.53195 * 109.49895 * 120.07755 * 2 1 3 5 5 N 1.46924 * 108.77302 * 65.31538 * 4 2 1 6 6 C 1.34774 * 120.63037 * 233.58319 * 5 4 2 7 7 O 1.21279 * 120.00260 * 0.03002 * 6 5 4 8 8 C 1.50697 * 120.00034 * 180.02562 * 6 5 4 9 9 C 1.53008 * 109.47262 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47362 * 180.02562 * 9 8 6 11 11 N 1.46497 * 109.47556 * 180.02562 * 10 9 8 12 12 C 1.35306 * 125.87163 * 124.99786 * 11 10 9 13 13 C 1.35353 * 106.17589 * 180.02562 * 12 11 10 14 14 N 1.33769 * 106.49416 * 0.02562 * 13 12 11 15 15 N 1.28631 * 108.89098 * 359.73189 * 14 13 12 16 16 C 1.46925 * 118.73966 * 53.61411 * 5 4 2 17 17 C 1.53192 * 108.77313 * 306.38559 * 16 5 4 18 18 C 1.53039 * 109.31131 * 54.63670 * 17 16 5 19 19 H 1.09001 * 109.46007 * 58.64375 * 18 17 16 20 20 C 1.53004 * 109.45895 * 178.61251 * 18 17 16 21 21 N 1.46499 * 109.47198 * 295.00122 * 20 18 17 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31624 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47201 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47080 * 120.00466 * 26 24 22 29 29 H 1.48506 * 109.47018 * 240.00565 * 26 24 22 30 30 H 1.08996 * 109.46979 * 180.08504 * 1 2 3 31 31 H 1.08999 * 109.46796 * 300.08370 * 1 2 3 32 32 H 1.09000 * 109.47008 * 60.08554 * 1 2 3 33 33 H 1.09000 * 109.58854 * 305.53079 * 4 2 1 34 34 H 1.09000 * 109.58828 * 185.10430 * 4 2 1 35 35 H 1.09003 * 109.47627 * 300.00374 * 8 6 5 36 36 H 1.09005 * 109.47162 * 60.00685 * 8 6 5 37 37 H 1.08997 * 109.47248 * 300.00373 * 9 8 6 38 38 H 1.09005 * 109.46716 * 60.00115 * 9 8 6 39 39 H 1.08997 * 109.47240 * 300.00373 * 10 9 8 40 40 H 1.09007 * 109.47108 * 59.99809 * 10 9 8 41 41 H 1.08001 * 126.90971 * 359.97438 * 12 11 10 42 42 H 1.08004 * 126.75085 * 180.02562 * 13 12 11 43 43 H 1.09005 * 109.58760 * 186.60248 * 16 5 4 44 44 H 1.08996 * 109.70744 * 66.24341 * 16 5 4 45 45 H 1.08998 * 109.50072 * 294.68866 * 17 16 5 46 46 H 1.09000 * 109.49780 * 174.59014 * 17 16 5 47 47 H 1.09009 * 109.46730 * 174.99909 * 20 18 17 48 48 H 1.08998 * 109.46846 * 55.00454 * 20 18 17 49 49 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 50 50 H 0.96998 * 119.99409 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7237 1.2496 5 7 1.6516 -2.1381 1.1697 6 6 0.9749 -2.7219 2.1784 7 8 0.6815 -2.0789 3.1640 8 6 0.5826 -4.1737 2.0817 9 6 -0.1703 -4.5842 3.3489 10 6 -0.5679 -6.0583 3.2511 11 7 -1.2893 -6.4512 4.4641 12 6 -2.5200 -7.0118 4.5081 13 6 -2.7982 -7.2082 5.8181 14 7 -1.7382 -6.7635 6.5023 15 7 -0.8595 -6.3262 5.6709 16 6 2.0141 -2.9040 -0.0306 17 6 1.5030 -2.1559 -1.2659 18 6 2.0408 -0.7232 -1.2483 19 1 3.1306 -0.7445 -1.2350 20 6 1.5607 0.0168 -2.4984 21 7 2.1480 -0.6032 -3.6887 22 6 1.8642 -0.1036 -4.9317 23 1 1.2038 0.7448 -5.0348 24 6 2.4253 -0.6874 -6.0591 25 7 3.2298 -1.7216 -5.9334 26 14 2.0375 -0.0063 -7.7547 27 1 1.1140 1.1492 -7.6247 28 1 3.2946 0.4365 -8.4097 29 1 1.3961 -1.0630 -8.5778 30 1 -0.3633 -1.0276 0.0015 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.6008 -0.2730 2.1389 34 1 3.1275 -0.6462 1.2981 35 1 -0.0608 -4.3194 1.2140 36 1 1.4784 -4.7859 1.9766 37 1 0.4728 -4.4386 4.2169 38 1 -1.0661 -3.9720 3.4536 39 1 -1.2108 -6.2044 2.3831 40 1 0.3281 -6.6702 3.1465 41 1 -3.1533 -7.2531 3.6672 42 1 -3.6988 -7.6393 6.2299 43 1 1.5554 -3.8919 0.0140 44 1 3.0977 -3.0065 -0.0878 45 1 0.4133 -2.1355 -1.2539 46 1 1.8481 -2.6630 -2.1669 47 1 1.8686 1.0611 -2.4431 48 1 0.4738 -0.0388 -2.5585 49 1 2.7414 -1.3649 -3.5960 50 1 3.6216 -2.1297 -6.7213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184586022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:03 Heat of formation + Delta-G solvation = 40.421562 kcal Electronic energy + Delta-G solvation = -28803.150777 eV Core-core repulsion = 24866.575699 eV Total energy + Delta-G solvation = -3936.575078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.13117 -41.48343 -39.36983 -36.82051 -36.50269 -34.87202 -33.72420 -33.01941 -31.91738 -31.91062 -29.16984 -28.46354 -27.34970 -25.50760 -24.30237 -24.10818 -23.49498 -22.76681 -22.02878 -20.73452 -19.59524 -18.99597 -18.58308 -17.90206 -17.35670 -16.88669 -16.76767 -16.61244 -16.01482 -15.80407 -15.69055 -15.44092 -15.30070 -15.07073 -14.78027 -14.65315 -14.31768 -13.93909 -13.69240 -13.60031 -13.43869 -13.14246 -12.96932 -12.91698 -12.80399 -12.64735 -12.55184 -12.34935 -12.13405 -12.03265 -11.98800 -11.90065 -11.75249 -11.53869 -11.35595 -11.20975 -11.05717 -10.90086 -10.72860 -10.29681 -9.58836 -8.94828 -7.93865 -5.20800 0.71990 1.47974 1.48957 1.51991 1.58258 1.65661 1.66649 2.07317 2.57013 3.38185 3.39971 3.59875 3.72152 3.76629 3.78508 3.83306 3.89488 4.09885 4.15739 4.21002 4.25377 4.33767 4.36009 4.37766 4.39998 4.46088 4.52455 4.63695 4.67163 4.75639 4.78543 4.80720 4.84525 4.91170 5.00425 5.01850 5.10323 5.18092 5.20795 5.21994 5.24016 5.32238 5.36945 5.51407 5.57242 5.66328 5.74004 6.29747 6.46503 7.19752 7.36659 7.57112 8.13288 8.37614 9.29490 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.001950 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.517262 B =14353.692873 C =15165.655694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.083 0.917 4 C 0.119 3.881 5 N -0.604 5.604 6 C 0.508 3.492 7 O -0.592 6.592 8 C -0.131 4.131 9 C -0.108 4.108 10 C 0.110 3.890 11 N -0.288 5.288 12 C -0.034 4.034 13 C -0.072 4.072 14 N -0.321 5.321 15 N -0.131 5.131 16 C 0.110 3.890 17 C -0.122 4.122 18 C -0.079 4.079 19 H 0.065 0.935 20 C 0.158 3.842 21 N -0.740 5.740 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.072 4.072 25 N -0.965 5.965 26 Si 0.968 3.032 27 H -0.270 1.270 28 H -0.295 1.295 29 H -0.292 1.292 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.151 0.849 40 H 0.120 0.880 41 H 0.238 0.762 42 H 0.215 0.785 43 H 0.119 0.881 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.010 0.990 48 H 0.021 0.979 49 H 0.377 0.623 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 -11.470 16.748 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.102 0.898 4 C -0.004 4.004 5 N -0.336 5.336 6 C 0.299 3.701 7 O -0.473 6.473 8 C -0.170 4.170 9 C -0.147 4.147 10 C -0.009 4.009 11 N -0.082 5.082 12 C -0.185 4.185 13 C -0.230 4.230 14 N -0.186 5.186 15 N -0.110 5.110 16 C -0.012 4.012 17 C -0.160 4.160 18 C -0.098 4.098 19 H 0.083 0.917 20 C 0.032 3.968 21 N -0.383 5.383 22 C -0.375 4.375 23 H 0.088 0.912 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.797 3.203 27 H -0.195 1.195 28 H -0.222 1.222 29 H -0.219 1.219 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.169 0.831 40 H 0.138 0.862 41 H 0.254 0.746 42 H 0.231 0.769 43 H 0.137 0.863 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.028 0.972 48 H 0.039 0.961 49 H 0.209 0.791 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.525 -10.516 18.031 22.547 hybrid contribution -0.540 0.216 -1.770 1.863 sum -9.064 -10.300 16.261 21.276 Atomic orbital electron populations 1.21785 0.94862 1.01737 1.01141 1.21386 0.96533 0.99576 0.93484 0.89828 1.21576 0.99782 0.81045 0.98022 1.48184 1.55493 1.11388 1.18528 1.21235 0.76476 0.90845 0.81568 1.90697 1.56674 1.66951 1.32932 1.21657 1.04056 0.91322 0.99999 1.21426 1.00851 0.94139 0.98312 1.22536 0.99806 0.96174 0.82378 1.47841 1.13671 1.38728 1.07983 1.24486 0.88905 1.03217 1.01916 1.24278 1.00857 1.06415 0.91446 1.75059 1.01968 1.14331 1.27262 1.78274 1.22952 1.21793 0.87990 1.21950 1.01385 0.95682 0.82140 1.21865 1.01192 0.95032 0.97930 1.21183 0.99852 0.95608 0.93181 0.91671 1.20844 0.95534 0.94519 0.85926 1.42543 1.56892 1.37416 1.01487 1.19622 1.22083 1.10456 0.85333 0.91202 1.25464 1.00639 0.99159 1.01207 1.69792 1.36943 1.25821 1.29033 0.85155 0.77049 0.77570 0.80477 1.19474 1.22205 1.21905 0.92670 0.93033 0.92871 0.90298 0.90758 0.85161 0.85327 0.92501 0.92422 0.83093 0.86178 0.74602 0.76875 0.86284 0.90344 0.91420 0.91541 0.97249 0.96114 0.79070 0.94012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.38 71.98 0.60 -2.67 16 2 C -0.09 -2.12 2.72 -10.71 -0.03 -2.15 16 3 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.12 2.61 5.83 86.36 0.50 3.11 16 5 N -0.60 -11.75 2.41 -818.91 -1.97 -13.72 16 6 C 0.51 10.42 7.70 87.66 0.67 11.09 16 7 O -0.59 -17.70 15.39 -3.03 -0.05 -17.75 16 8 C -0.13 -1.29 4.05 29.85 0.12 -1.17 16 9 C -0.11 -1.44 4.63 30.60 0.14 -1.29 16 10 C 0.11 0.73 6.45 86.38 0.56 1.29 16 11 N -0.29 -4.23 3.44 -347.75 -1.20 -5.43 16 12 C -0.03 -0.34 11.57 83.49 0.97 0.63 16 13 C -0.07 -1.09 12.05 83.73 1.01 -0.08 16 14 N -0.32 -7.97 12.41 -58.25 -0.72 -8.69 16 15 N -0.13 -3.16 12.92 37.02 0.48 -2.68 16 16 C 0.11 1.80 6.34 86.36 0.55 2.35 16 17 C -0.12 -2.92 4.91 30.67 0.15 -2.77 16 18 C -0.08 -2.20 1.96 -10.77 -0.02 -2.23 16 19 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 20 C 0.16 5.89 5.18 86.38 0.45 6.33 16 21 N -0.74 -35.38 5.32 -343.44 -1.83 -37.20 16 22 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 23 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 25 N -0.96 -56.49 13.06 21.65 0.28 -56.20 16 26 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 29 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 30 H 0.05 1.29 5.97 -2.39 -0.01 1.28 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.34 6.58 -2.39 -0.02 1.33 16 33 H 0.08 1.96 7.01 -2.39 -0.02 1.94 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.13 0.56 7.69 -2.39 -0.02 0.54 16 36 H 0.13 0.60 7.94 -2.38 -0.02 0.58 16 37 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 38 H 0.06 1.01 8.10 -2.38 -0.02 1.00 16 39 H 0.15 -0.25 8.07 -2.39 -0.02 -0.27 16 40 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.24 -0.16 8.06 -2.91 -0.02 -0.18 16 42 H 0.21 1.67 8.06 -2.91 -0.02 1.64 16 43 H 0.12 1.09 5.93 -2.38 -0.01 1.08 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 1.62 6.34 -2.39 -0.02 1.61 16 46 H 0.07 1.93 7.15 -2.39 -0.02 1.91 16 47 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 48 H 0.02 0.79 6.74 -2.39 -0.02 0.77 16 49 H 0.38 18.77 6.85 -92.71 -0.63 18.13 16 50 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -81.35 394.79 4.31 -77.04 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.31 Total: 21.14 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 6.98 Total: -3.39 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -4.96 Total: -123.93 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.05 Total: -17.75 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -81.35 4.31 -77.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184586022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.464 kcal (2) G-P(sol) polarization free energy of solvation -81.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds