Wall clock time and date at job start Wed Apr 1 2020 00:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49938 * 2 1 4 4 C 1.53189 * 109.50088 * 120.06542 * 2 1 3 5 5 N 1.46926 * 108.78008 * 174.58443 * 4 2 1 6 6 C 1.34776 * 120.63044 * 126.41224 * 5 4 2 7 7 O 1.21274 * 119.99962 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00013 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47306 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47077 * 179.97438 * 9 8 6 11 11 N 1.46498 * 109.46698 * 180.02562 * 10 9 8 12 12 C 1.35317 * 125.87089 * 125.00133 * 11 10 9 13 13 C 1.35350 * 106.17553 * 179.97438 * 12 11 10 14 14 N 1.33771 * 106.49941 * 0.02562 * 13 12 11 15 15 N 1.28644 * 108.88370 * 359.73601 * 14 13 12 16 16 C 1.46932 * 118.73728 * 306.39776 * 5 4 2 17 17 C 1.53190 * 108.77579 * 53.60326 * 16 5 4 18 18 C 1.53038 * 109.34209 * 305.37928 * 17 16 5 19 19 H 1.09001 * 109.43067 * 301.31774 * 18 17 16 20 20 C 1.52997 * 109.48458 * 181.35357 * 18 17 16 21 21 N 1.46498 * 109.47142 * 64.91675 * 20 18 17 22 22 C 1.36934 * 120.00071 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00051 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00056 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00118 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00106 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47223 * 89.99615 * 26 24 22 28 28 H 1.48504 * 109.47305 * 209.99892 * 26 24 22 29 29 H 1.48505 * 109.47087 * 329.99713 * 26 24 22 30 30 H 1.09002 * 109.47153 * 299.99649 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99822 * 1 2 3 33 33 H 1.09001 * 109.58929 * 294.37503 * 4 2 1 34 34 H 1.09003 * 109.58483 * 54.80299 * 4 2 1 35 35 H 1.09000 * 109.47089 * 300.00702 * 8 6 5 36 36 H 1.09001 * 109.47163 * 59.99870 * 8 6 5 37 37 H 1.08998 * 109.46958 * 300.00287 * 9 8 6 38 38 H 1.09004 * 109.46450 * 60.00311 * 9 8 6 39 39 H 1.09000 * 109.46770 * 300.00121 * 10 9 8 40 40 H 1.08996 * 109.47108 * 60.00500 * 10 9 8 41 41 H 1.07997 * 126.90376 * 359.97438 * 12 11 10 42 42 H 1.07996 * 126.74800 * 180.02562 * 13 12 11 43 43 H 1.09000 * 109.58063 * 173.39112 * 16 5 4 44 44 H 1.08995 * 109.58216 * 293.67300 * 16 5 4 45 45 H 1.09003 * 109.49840 * 65.32066 * 17 16 5 46 46 H 1.09004 * 109.49718 * 185.37815 * 17 16 5 47 47 H 1.09006 * 109.46493 * 184.91500 * 20 18 17 48 48 H 1.08995 * 109.47391 * 304.91619 * 20 18 17 49 49 H 0.97001 * 120.00309 * 0.02562 * 21 20 18 50 50 H 0.97004 * 120.00402 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2497 5 7 3.5046 -0.8288 1.1698 6 6 4.2812 -0.3858 2.1783 7 8 3.7732 0.1050 3.1641 8 6 5.7806 -0.5004 2.0811 9 6 6.4192 0.0722 3.3481 10 6 7.9415 -0.0448 3.2496 11 7 8.5528 0.5030 4.4631 12 6 9.4172 -0.1454 5.2776 13 6 9.7274 0.7243 6.2672 14 7 9.0462 1.8472 6.0134 15 7 8.3639 1.6856 4.9349 16 6 4.1053 -1.4267 -0.0305 17 6 3.5708 -0.6953 -1.2659 18 6 2.0408 -0.7227 -1.2487 19 1 1.6967 -1.7569 -1.2359 20 6 1.5037 -0.0224 -2.4984 21 7 1.8931 -0.7819 -3.6891 22 6 1.5217 -0.3440 -4.9323 23 1 0.9420 0.5614 -5.0350 24 6 1.8911 -1.0633 -6.0605 25 7 1.5345 -0.6422 -7.2554 26 14 2.8943 -2.6291 -5.8830 27 1 1.9791 -3.7905 -5.7465 28 1 3.7473 -2.8095 -7.0851 29 1 3.7541 -2.5319 -4.6760 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.7638 -0.1574 2.1389 34 1 1.6053 -1.7213 1.2984 35 1 6.0588 -1.5490 1.9755 36 1 6.1322 0.0577 1.2134 37 1 6.1409 1.1208 3.4531 38 1 6.0676 -0.4857 4.2161 39 1 8.2193 -1.0936 3.1449 40 1 8.2934 0.5128 2.3817 41 1 9.7855 -1.1540 5.1612 42 1 10.3939 0.5466 7.0982 43 1 5.1896 -1.3245 0.0140 44 1 3.8396 -2.4824 -0.0849 45 1 3.9159 0.3386 -1.2543 46 1 3.9339 -1.1898 -2.1669 47 1 0.4166 0.0353 -2.4436 48 1 1.9184 0.9838 -2.5577 49 1 2.4134 -1.5953 -3.5969 50 1 1.7923 -1.1451 -8.0439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184586024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:12 Heat of formation + Delta-G solvation = 65.877551 kcal Electronic energy + Delta-G solvation = -28671.596045 eV Core-core repulsion = 24736.124822 eV Total energy + Delta-G solvation = -3935.471223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.57224 -40.55971 -38.37606 -36.26863 -35.22798 -33.84798 -32.94502 -32.08234 -31.37588 -30.75847 -28.63122 -27.26275 -26.46639 -24.05173 -23.32665 -22.89296 -22.59046 -21.56279 -21.21881 -20.08738 -19.20337 -18.08795 -17.68152 -17.18891 -16.72087 -16.24064 -16.08409 -15.36300 -15.04542 -14.90878 -14.55345 -14.48441 -14.25168 -14.17180 -13.60867 -13.42565 -13.15923 -13.12476 -12.96835 -12.64746 -12.49459 -12.31421 -12.06350 -11.99134 -11.91731 -11.75480 -11.47580 -11.38344 -11.21844 -11.04579 -10.94714 -10.57651 -10.49837 -10.45863 -10.21572 -10.14696 -9.94253 -9.75237 -9.62631 -8.94101 -8.76902 -7.26470 -5.80994 -3.16411 1.23720 1.91378 2.25491 2.38309 2.76748 3.28518 3.32592 3.39205 3.84427 4.02246 4.14526 4.32316 4.50460 4.53328 4.57824 4.61328 4.68562 4.71367 4.74581 4.85491 4.86325 4.90937 4.98533 5.13989 5.24870 5.26516 5.35660 5.47077 5.48609 5.55573 5.63501 5.66176 5.69517 5.71417 5.74602 5.81029 5.84727 6.06622 6.11672 6.15532 6.17802 6.27641 6.32812 6.39811 6.68805 6.76060 7.18715 7.93612 7.95640 8.17208 8.37951 9.17066 9.89172 10.09111 11.37551 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.002091 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.789038 B =13385.325903 C =14488.190490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.117 3.883 5 N -0.609 5.609 6 C 0.515 3.485 7 O -0.544 6.544 8 C -0.138 4.138 9 C -0.117 4.117 10 C 0.113 3.887 11 N -0.289 5.289 12 C -0.053 4.053 13 C -0.054 4.054 14 N -0.274 5.274 15 N -0.079 5.079 16 C 0.104 3.896 17 C -0.129 4.129 18 C -0.093 4.093 19 H 0.071 0.929 20 C 0.160 3.840 21 N -0.755 5.755 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.934 5.934 26 Si 0.886 3.114 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.190 0.810 42 H 0.189 0.811 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.033 0.967 48 H 0.025 0.975 49 H 0.359 0.641 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.687 -4.919 23.683 27.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.005 4.005 5 N -0.342 5.342 6 C 0.303 3.697 7 O -0.421 6.421 8 C -0.179 4.179 9 C -0.156 4.156 10 C -0.008 4.008 11 N -0.083 5.083 12 C -0.204 4.204 13 C -0.211 4.211 14 N -0.140 5.140 15 N -0.059 5.059 16 C -0.018 4.018 17 C -0.167 4.167 18 C -0.112 4.112 19 H 0.090 0.910 20 C 0.033 3.967 21 N -0.401 5.401 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.582 5.582 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.207 0.793 42 H 0.206 0.794 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.051 0.949 48 H 0.043 0.957 49 H 0.192 0.808 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.578 -3.177 23.813 27.118 hybrid contribution 1.323 -2.433 -0.228 2.779 sum 13.900 -5.610 23.586 27.946 Atomic orbital electron populations 1.21843 0.94195 1.02233 1.02320 1.21443 0.96296 0.99996 0.93862 0.90707 1.21717 0.78636 1.00882 0.99291 1.48160 1.07201 1.60600 1.18197 1.20445 0.89141 0.77568 0.82500 1.90715 1.75546 1.44700 1.31152 1.21594 0.92834 1.03670 0.99795 1.21607 0.90873 1.04796 0.98336 1.22221 0.94745 1.00388 0.83410 1.47534 1.30049 1.10396 1.20282 1.23725 0.99552 1.02211 0.94863 1.23655 1.04594 0.90947 1.01938 1.75158 1.07833 1.23226 1.07770 1.78361 1.19977 1.00307 1.07303 1.21888 0.98025 0.97486 0.84443 1.21966 0.96301 1.01473 0.96993 1.21394 0.94592 1.00251 0.94972 0.91025 1.20740 0.97297 0.94114 0.84531 1.42719 1.66086 1.28659 1.02614 1.19061 1.28320 1.07981 0.81919 0.89296 1.24687 1.00759 0.98727 0.95133 1.69701 1.50908 1.40564 0.97039 0.86538 0.80389 0.84717 0.76737 1.21144 1.21779 1.20455 0.92842 0.92512 0.91125 0.89110 0.91533 0.88427 0.88038 0.89000 0.90211 0.87399 0.87863 0.79278 0.79388 0.89870 0.91109 0.91275 0.89840 0.94899 0.95703 0.80791 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.82 37.16 0.33 -1.32 16 2 C -0.10 -1.12 2.41 -90.50 -0.22 -1.34 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.28 5.72 -3.71 -0.02 1.26 16 5 N -0.61 -6.23 2.97 -172.77 -0.51 -6.75 16 6 C 0.52 5.49 7.70 -10.99 -0.08 5.41 16 7 O -0.54 -7.93 15.39 5.56 0.09 -7.85 16 8 C -0.14 -0.85 4.05 -27.88 -0.11 -0.96 16 9 C -0.12 -0.82 4.63 -26.73 -0.12 -0.94 16 10 C 0.11 0.52 6.46 -4.04 -0.03 0.49 16 11 N -0.29 -2.29 3.44 -61.26 -0.21 -2.50 16 12 C -0.05 -0.32 11.57 -17.04 -0.20 -0.51 16 13 C -0.05 -0.42 12.05 -17.74 -0.21 -0.64 16 14 N -0.27 -3.29 12.41 30.23 0.38 -2.91 16 15 N -0.08 -0.94 12.92 60.35 0.78 -0.16 16 16 C 0.10 0.92 6.34 -3.71 -0.02 0.90 16 17 C -0.13 -1.55 5.25 -26.61 -0.14 -1.69 16 18 C -0.09 -1.25 1.73 -90.58 -0.16 -1.41 16 19 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 20 C 0.16 2.87 5.41 -4.04 -0.02 2.85 16 21 N -0.76 -16.91 5.12 -59.91 -0.31 -17.22 16 22 C -0.24 -6.69 10.47 -15.06 -0.16 -6.85 16 23 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 24 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 25 N -0.93 -28.86 13.97 55.49 0.78 -28.08 16 26 Si 0.89 21.22 27.73 -169.99 -4.71 16.51 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.28 -6.06 6.52 56.52 0.37 -5.70 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.86 6.30 -51.93 -0.33 0.54 16 33 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.35 7.94 -51.93 -0.41 -0.06 16 36 H 0.10 0.48 7.69 -51.93 -0.40 0.08 16 37 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.11 0.14 8.07 -51.93 -0.42 -0.28 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.19 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.19 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.08 1.13 7.15 -51.93 -0.37 0.76 16 47 H 0.03 0.61 6.14 -51.93 -0.32 0.29 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.36 7.72 4.71 -40.82 -0.19 7.53 16 50 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -36.86 395.68 -7.23 -44.09 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.19 Total: 3.69 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.27 Total: -4.77 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.90 Total: -57.62 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.86 -7.23 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184586024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.963 kcal (2) G-P(sol) polarization free energy of solvation -36.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds