Wall clock time and date at job start Wed Apr 1 2020 00:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49938 * 2 1 4 4 C 1.53189 * 109.50088 * 120.06542 * 2 1 3 5 5 N 1.46926 * 108.78008 * 174.58443 * 4 2 1 6 6 C 1.34776 * 120.63044 * 126.41224 * 5 4 2 7 7 O 1.21274 * 119.99962 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00013 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47306 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47077 * 179.97438 * 9 8 6 11 11 N 1.46498 * 109.46698 * 180.02562 * 10 9 8 12 12 C 1.35317 * 125.87089 * 125.00133 * 11 10 9 13 13 C 1.35350 * 106.17553 * 179.97438 * 12 11 10 14 14 N 1.33771 * 106.49941 * 0.02562 * 13 12 11 15 15 N 1.28644 * 108.88370 * 359.73601 * 14 13 12 16 16 C 1.46932 * 118.73728 * 306.39776 * 5 4 2 17 17 C 1.53190 * 108.77579 * 53.60326 * 16 5 4 18 18 C 1.53038 * 109.34209 * 305.37928 * 17 16 5 19 19 H 1.09001 * 109.43067 * 301.31774 * 18 17 16 20 20 C 1.52997 * 109.48458 * 181.35357 * 18 17 16 21 21 N 1.46498 * 109.47142 * 64.91675 * 20 18 17 22 22 C 1.36934 * 120.00071 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00051 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00056 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00118 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00106 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47223 * 89.99615 * 26 24 22 28 28 H 1.48504 * 109.47305 * 209.99892 * 26 24 22 29 29 H 1.48505 * 109.47087 * 329.99713 * 26 24 22 30 30 H 1.09002 * 109.47153 * 299.99649 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99822 * 1 2 3 33 33 H 1.09001 * 109.58929 * 294.37503 * 4 2 1 34 34 H 1.09003 * 109.58483 * 54.80299 * 4 2 1 35 35 H 1.09000 * 109.47089 * 300.00702 * 8 6 5 36 36 H 1.09001 * 109.47163 * 59.99870 * 8 6 5 37 37 H 1.08998 * 109.46958 * 300.00287 * 9 8 6 38 38 H 1.09004 * 109.46450 * 60.00311 * 9 8 6 39 39 H 1.09000 * 109.46770 * 300.00121 * 10 9 8 40 40 H 1.08996 * 109.47108 * 60.00500 * 10 9 8 41 41 H 1.07997 * 126.90376 * 359.97438 * 12 11 10 42 42 H 1.07996 * 126.74800 * 180.02562 * 13 12 11 43 43 H 1.09000 * 109.58063 * 173.39112 * 16 5 4 44 44 H 1.08995 * 109.58216 * 293.67300 * 16 5 4 45 45 H 1.09003 * 109.49840 * 65.32066 * 17 16 5 46 46 H 1.09004 * 109.49718 * 185.37815 * 17 16 5 47 47 H 1.09006 * 109.46493 * 184.91500 * 20 18 17 48 48 H 1.08995 * 109.47391 * 304.91619 * 20 18 17 49 49 H 0.97001 * 120.00309 * 0.02562 * 21 20 18 50 50 H 0.97004 * 120.00402 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2497 5 7 3.5046 -0.8288 1.1698 6 6 4.2812 -0.3858 2.1783 7 8 3.7732 0.1050 3.1641 8 6 5.7806 -0.5004 2.0811 9 6 6.4192 0.0722 3.3481 10 6 7.9415 -0.0448 3.2496 11 7 8.5528 0.5030 4.4631 12 6 9.4172 -0.1454 5.2776 13 6 9.7274 0.7243 6.2672 14 7 9.0462 1.8472 6.0134 15 7 8.3639 1.6856 4.9349 16 6 4.1053 -1.4267 -0.0305 17 6 3.5708 -0.6953 -1.2659 18 6 2.0408 -0.7227 -1.2487 19 1 1.6967 -1.7569 -1.2359 20 6 1.5037 -0.0224 -2.4984 21 7 1.8931 -0.7819 -3.6891 22 6 1.5217 -0.3440 -4.9323 23 1 0.9420 0.5614 -5.0350 24 6 1.8911 -1.0633 -6.0605 25 7 1.5345 -0.6422 -7.2554 26 14 2.8943 -2.6291 -5.8830 27 1 1.9791 -3.7905 -5.7465 28 1 3.7473 -2.8095 -7.0851 29 1 3.7541 -2.5319 -4.6760 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.7638 -0.1574 2.1389 34 1 1.6053 -1.7213 1.2984 35 1 6.0588 -1.5490 1.9755 36 1 6.1322 0.0577 1.2134 37 1 6.1409 1.1208 3.4531 38 1 6.0676 -0.4857 4.2161 39 1 8.2193 -1.0936 3.1449 40 1 8.2934 0.5128 2.3817 41 1 9.7855 -1.1540 5.1612 42 1 10.3939 0.5466 7.0982 43 1 5.1896 -1.3245 0.0140 44 1 3.8396 -2.4824 -0.0849 45 1 3.9159 0.3386 -1.2543 46 1 3.9339 -1.1898 -2.1669 47 1 0.4166 0.0353 -2.4436 48 1 1.9184 0.9838 -2.5577 49 1 2.4134 -1.5953 -3.5969 50 1 1.7923 -1.1451 -8.0439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184586024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:11 Heat of formation + Delta-G solvation = 39.664414 kcal Electronic energy + Delta-G solvation = -28672.732732 eV Core-core repulsion = 24736.124822 eV Total energy + Delta-G solvation = -3936.607910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.13573 -41.39937 -39.37355 -36.86675 -36.60930 -35.05368 -33.80807 -33.34509 -32.30400 -31.91974 -29.29868 -28.55327 -27.26671 -25.34620 -24.24257 -23.68258 -23.41120 -22.64710 -22.04271 -21.13249 -20.00460 -19.60090 -18.62092 -17.90777 -17.30556 -16.97859 -16.84830 -16.59282 -16.04289 -15.85333 -15.65853 -15.44127 -15.21276 -15.04298 -14.79333 -14.52770 -14.42961 -14.06850 -13.94786 -13.60057 -13.24800 -13.17290 -13.13639 -12.99764 -12.86123 -12.73268 -12.60295 -12.53095 -12.14237 -12.02805 -11.94974 -11.83911 -11.75694 -11.62255 -11.48334 -11.23121 -11.07110 -10.94624 -10.76701 -10.30300 -9.63488 -9.25972 -8.00481 -5.34490 0.71692 1.38414 1.45346 1.51569 1.52694 1.62093 1.66311 2.04396 2.51447 3.30606 3.36782 3.53064 3.59372 3.72285 3.75391 3.83524 3.86668 4.00007 4.05821 4.14356 4.20138 4.31711 4.35346 4.37118 4.39566 4.43774 4.51696 4.61817 4.63557 4.66389 4.74393 4.79345 4.81249 4.87443 4.99451 5.02097 5.07287 5.11961 5.17101 5.19634 5.27929 5.31916 5.35400 5.51243 5.59848 5.73884 5.77465 6.22764 6.42795 7.10495 7.16520 7.56808 7.85605 8.07506 9.21219 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.002091 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.789038 B =13385.325903 C =14488.190490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.060 0.940 4 C 0.120 3.880 5 N -0.609 5.609 6 C 0.507 3.493 7 O -0.593 6.593 8 C -0.129 4.129 9 C -0.110 4.110 10 C 0.111 3.889 11 N -0.289 5.289 12 C -0.032 4.032 13 C -0.073 4.073 14 N -0.322 5.322 15 N -0.134 5.134 16 C 0.109 3.891 17 C -0.129 4.129 18 C -0.083 4.083 19 H 0.079 0.921 20 C 0.158 3.842 21 N -0.752 5.752 22 C -0.236 4.236 23 H 0.048 0.952 24 C -0.070 4.070 25 N -0.987 5.987 26 Si 0.961 3.039 27 H -0.279 1.279 28 H -0.298 1.298 29 H -0.238 1.238 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.156 0.844 40 H 0.117 0.883 41 H 0.240 0.760 42 H 0.215 0.785 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.026 0.974 48 H 0.012 0.988 49 H 0.368 0.632 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.609 -8.753 24.889 31.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.002 4.002 5 N -0.341 5.341 6 C 0.297 3.703 7 O -0.474 6.474 8 C -0.169 4.169 9 C -0.149 4.149 10 C -0.009 4.009 11 N -0.083 5.083 12 C -0.183 4.183 13 C -0.231 4.231 14 N -0.187 5.187 15 N -0.113 5.113 16 C -0.013 4.013 17 C -0.167 4.167 18 C -0.102 4.102 19 H 0.098 0.902 20 C 0.032 3.968 21 N -0.398 5.398 22 C -0.368 4.368 23 H 0.066 0.934 24 C -0.261 4.261 25 N -0.638 5.638 26 Si 0.787 3.213 27 H -0.206 1.206 28 H -0.225 1.225 29 H -0.162 1.162 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.157 0.843 36 H 0.141 0.859 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.174 0.826 40 H 0.135 0.865 41 H 0.257 0.743 42 H 0.231 0.769 43 H 0.139 0.861 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.044 0.956 48 H 0.030 0.970 49 H 0.203 0.797 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.494 -6.991 25.051 30.274 hybrid contribution 0.310 -1.160 -0.598 1.342 sum 15.804 -8.151 24.453 30.235 Atomic orbital electron populations 1.21822 0.93929 1.02691 1.02025 1.21328 0.96532 0.99169 0.93676 0.92106 1.21591 0.79758 1.01138 0.97753 1.48266 1.06789 1.60368 1.18697 1.21311 0.91079 0.76265 0.81619 1.90703 1.76782 1.46787 1.33172 1.21657 0.88950 1.06464 0.99824 1.21437 0.93036 1.02058 0.98336 1.22544 0.92510 1.03179 0.82636 1.47857 1.29865 1.09608 1.20934 1.24503 0.97460 1.03401 0.92976 1.24295 1.04874 0.90400 1.03527 1.75074 1.09258 1.25713 1.08677 1.78296 1.21913 1.02696 1.08367 1.22017 0.99964 0.97521 0.81788 1.21934 0.94752 1.01528 0.98499 1.21293 0.96037 0.99985 0.92908 0.90243 1.20873 0.97035 0.93693 0.85224 1.42634 1.66009 1.29233 1.01958 1.19006 1.27017 1.06437 0.84297 0.93407 1.25628 1.02783 1.03167 0.94487 1.69914 1.53064 1.42665 0.98130 0.85333 0.78867 0.79197 0.77922 1.20553 1.22537 1.16170 0.91754 0.91654 0.92817 0.90611 0.90125 0.84254 0.85850 0.92988 0.92082 0.82610 0.86536 0.74345 0.76869 0.86145 0.89377 0.92132 0.90722 0.95581 0.97003 0.79749 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.82 71.98 0.63 -2.54 16 2 C -0.09 -1.95 2.41 -10.72 -0.03 -1.98 16 3 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.12 2.42 5.72 86.36 0.49 2.92 16 5 N -0.61 -10.70 2.97 -818.91 -2.43 -13.14 16 6 C 0.51 9.71 7.70 87.66 0.67 10.39 16 7 O -0.59 -17.33 15.39 -3.01 -0.05 -17.38 16 8 C -0.13 -1.06 4.05 29.85 0.12 -0.94 16 9 C -0.11 -1.33 4.63 30.60 0.14 -1.19 16 10 C 0.11 0.60 6.46 86.38 0.56 1.16 16 11 N -0.29 -4.00 3.44 -347.74 -1.20 -5.19 16 12 C -0.03 -0.28 11.57 83.49 0.97 0.69 16 13 C -0.07 -1.04 12.05 83.73 1.01 -0.03 16 14 N -0.32 -7.90 12.41 -58.26 -0.72 -8.63 16 15 N -0.13 -3.20 12.92 37.02 0.48 -2.72 16 16 C 0.11 1.40 6.34 86.36 0.55 1.95 16 17 C -0.13 -2.69 5.25 30.67 0.16 -2.53 16 18 C -0.08 -2.08 1.73 -10.77 -0.02 -2.10 16 19 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 20 C 0.16 5.64 5.41 86.38 0.47 6.11 16 21 N -0.75 -33.05 5.12 -343.47 -1.76 -34.81 16 22 C -0.24 -13.26 10.47 84.03 0.88 -12.38 16 23 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 25 N -0.99 -62.66 13.97 21.65 0.30 -62.36 16 26 Si 0.96 42.84 27.73 68.60 1.90 44.74 16 27 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 28 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.24 -8.93 6.52 99.48 0.65 -8.28 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.33 6.30 -2.38 -0.02 1.32 16 33 H 0.08 1.80 7.01 -2.39 -0.02 1.78 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.14 0.06 7.94 -2.39 -0.02 0.04 16 36 H 0.12 0.55 7.69 -2.39 -0.02 0.54 16 37 H 0.05 1.05 8.08 -2.39 -0.02 1.03 16 38 H 0.06 0.96 8.10 -2.38 -0.02 0.94 16 39 H 0.16 -0.62 8.07 -2.39 -0.02 -0.64 16 40 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.24 -0.61 8.06 -2.91 -0.02 -0.63 16 42 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.12 0.70 5.93 -2.39 -0.01 0.69 16 44 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 1.73 7.15 -2.38 -0.02 1.72 16 47 H 0.03 0.98 6.14 -2.38 -0.01 0.97 16 48 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.37 14.81 4.71 -92.71 -0.44 14.37 16 50 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -88.60 395.68 4.04 -84.56 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.44 Total: 18.96 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 7.08 Total: -4.04 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -5.33 Total: -126.85 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.05 Total: -17.38 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.90 Total: 44.74 kcal Total: -88.60 4.04 -84.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184586024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.227 kcal (2) G-P(sol) polarization free energy of solvation -88.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds