Wall clock time and date at job start Wed Apr 1 2020 00:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.52444 * 2 1 4 4 C 1.53621 * 109.63664 * 239.90753 * 2 1 3 5 5 N 1.46925 * 108.54524 * 294.86521 * 4 2 1 6 6 C 1.34776 * 120.63027 * 126.36612 * 5 4 2 7 7 O 1.21286 * 119.99899 * 359.72037 * 6 5 4 8 8 C 1.50700 * 120.00115 * 179.72157 * 6 5 4 9 9 C 1.53005 * 109.47053 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47053 * 180.02562 * 9 8 6 11 11 C 1.39668 * 127.04935 * 124.99697 * 10 9 8 12 12 N 1.31384 * 105.89833 * 179.73924 * 11 10 9 13 13 N 1.28601 * 108.71746 * 0.26236 * 12 11 10 14 14 C 1.46498 * 124.61656 * 179.97438 * 13 12 11 15 15 N 1.28599 * 110.76175 * 0.02562 * 13 12 11 16 16 C 1.46920 * 118.73836 * 306.09230 * 5 4 2 17 17 C 1.53199 * 108.77579 * 53.86188 * 16 5 4 18 18 C 1.53037 * 109.31078 * 305.36425 * 17 16 5 19 19 H 1.09002 * 109.46029 * 301.35829 * 18 17 16 20 20 C 1.53000 * 109.46273 * 181.38578 * 18 17 16 21 21 N 1.46510 * 109.46903 * 64.99871 * 20 18 17 22 22 C 1.36938 * 119.99730 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00167 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99446 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99379 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00423 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.46766 * 90.00308 * 26 24 22 28 28 H 1.48499 * 109.47152 * 210.00289 * 26 24 22 29 29 H 1.48492 * 109.46868 * 330.00400 * 26 24 22 30 30 H 1.09000 * 109.47816 * 299.92568 * 1 2 3 31 31 H 1.08995 * 109.47251 * 59.92867 * 1 2 3 32 32 H 1.09001 * 109.47377 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.73730 * 175.12901 * 4 2 1 34 34 H 1.09002 * 109.66392 * 54.56276 * 4 2 1 35 35 H 1.08993 * 109.46974 * 59.99986 * 8 6 5 36 36 H 1.08997 * 109.46635 * 299.99981 * 8 6 5 37 37 H 1.09000 * 109.46671 * 60.00207 * 9 8 6 38 38 H 1.08997 * 109.47052 * 299.99961 * 9 8 6 39 39 H 1.08002 * 127.05347 * 0.02562 * 11 10 9 40 40 H 1.09003 * 109.46968 * 90.02700 * 14 13 12 41 41 H 1.08997 * 109.47187 * 210.02998 * 14 13 12 42 42 H 1.09011 * 109.47129 * 330.02897 * 14 13 12 43 43 H 1.09000 * 109.58705 * 173.64534 * 16 5 4 44 44 H 1.08995 * 109.59276 * 294.07197 * 16 5 4 45 45 H 1.08995 * 109.49619 * 65.31397 * 17 16 5 46 46 H 1.08996 * 109.49637 * 185.37662 * 17 16 5 47 47 H 1.08992 * 109.47410 * 184.99874 * 20 18 17 48 48 H 1.08997 * 109.46944 * 305.00315 * 20 18 17 49 49 H 0.97000 * 119.99704 * 0.02562 * 21 20 18 50 50 H 0.97000 * 119.99550 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0462 -0.7255 -1.2519 5 7 1.6516 -2.1383 -1.1693 6 6 0.9748 -2.7223 -2.1779 7 8 0.6815 -2.0794 -3.1637 8 6 0.5826 -4.1742 -2.0810 9 6 -0.1692 -4.5851 -3.3487 10 6 -0.5620 -6.0367 -3.2515 11 6 -1.8453 -6.5719 -3.3830 12 7 -1.7114 -7.8700 -3.2306 13 7 -0.4710 -8.1346 -3.0178 14 6 0.0674 -9.4795 -2.7995 15 7 0.2321 -7.0579 -3.0217 16 6 2.0140 -2.9040 0.0311 17 6 1.5029 -2.1556 1.2663 18 6 2.0407 -0.7230 1.2485 19 1 3.1304 -0.7442 1.2352 20 6 1.5605 0.0173 2.4984 21 7 2.1479 -0.6025 3.6889 22 6 1.8592 -0.1065 4.9322 23 1 1.1988 0.7419 5.0352 24 6 2.4161 -0.6935 6.0601 25 7 2.1390 -0.2164 7.2551 26 14 3.5589 -2.1604 5.8819 27 1 4.9584 -1.6835 5.7437 28 1 3.4468 -3.0241 7.0847 29 1 3.1799 -2.9394 4.6759 30 1 -0.3635 0.5127 0.8906 31 1 -0.3633 0.5149 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1327 -0.6517 -1.2983 34 1 1.6089 -0.2754 -2.1431 35 1 -0.0608 -4.3195 -1.2134 36 1 1.4784 -4.7862 -1.9758 37 1 0.4747 -4.4398 -4.2161 38 1 -1.0649 -3.9730 -3.4544 39 1 -2.7597 -6.0303 -3.5756 40 1 0.3528 -9.9163 -3.7565 41 1 0.9422 -9.4200 -2.1520 42 1 -0.6922 -10.1029 -2.3276 43 1 1.5554 -3.8918 -0.0133 44 1 3.0979 -3.0043 0.0872 45 1 0.4132 -2.1354 1.2543 46 1 1.8474 -2.6629 2.1674 47 1 1.8684 1.0614 2.4431 48 1 0.4736 -0.0383 2.5586 49 1 2.7413 -1.3642 3.5963 50 1 2.5279 -0.6268 8.0432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185154535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:33 Heat of formation + Delta-G solvation = 78.710080 kcal Electronic energy + Delta-G solvation = -29148.253928 eV Core-core repulsion = 25213.339165 eV Total energy + Delta-G solvation = -3934.914763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.85961 -40.51517 -38.28637 -35.25637 -35.07573 -33.56523 -33.18097 -32.09507 -31.61534 -30.68957 -28.36840 -27.31280 -26.82340 -24.80840 -23.48409 -22.99817 -22.66433 -21.39753 -20.91082 -19.71030 -18.46157 -17.84908 -17.50604 -17.18109 -16.97017 -15.98125 -15.80970 -15.12640 -15.03840 -14.74910 -14.38798 -14.27098 -14.06227 -13.76421 -13.65202 -13.46601 -13.28138 -13.12690 -12.97031 -12.70748 -12.50279 -12.38033 -12.19534 -11.95981 -11.62957 -11.43983 -11.39608 -11.24386 -11.09755 -11.05172 -10.82882 -10.54817 -10.48633 -10.29617 -10.17316 -10.08451 -9.79900 -9.59001 -9.42671 -8.89785 -8.64264 -7.22719 -5.77728 -3.12795 1.48293 1.99370 2.09378 2.54526 2.92118 3.33353 3.36585 3.42804 3.73744 4.24059 4.50595 4.56170 4.57154 4.58906 4.70738 4.81775 4.83006 4.83610 4.91543 4.99145 5.02407 5.04945 5.17192 5.28766 5.40131 5.47187 5.49808 5.53132 5.63002 5.70854 5.72502 5.76756 5.77760 5.83216 5.84662 5.94762 5.96710 6.12959 6.18071 6.29709 6.32184 6.35404 6.39976 6.54802 6.70425 6.83065 7.32615 7.99259 8.00624 8.08117 8.41542 9.20840 9.93111 10.13202 11.40942 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002559 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.069106 B =10939.874742 C =12571.666822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.082 0.918 4 C 0.116 3.884 5 N -0.606 5.606 6 C 0.517 3.483 7 O -0.547 6.547 8 C -0.135 4.135 9 C -0.012 4.012 10 C 0.005 3.995 11 C -0.021 4.021 12 N -0.291 5.291 13 N -0.161 5.161 14 C 0.108 3.892 15 N -0.286 5.286 16 C 0.105 3.895 17 C -0.131 4.131 18 C -0.093 4.093 19 H 0.070 0.930 20 C 0.162 3.838 21 N -0.756 5.756 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.002 3.998 25 N -0.935 5.935 26 Si 0.885 3.115 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.198 0.802 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.026 0.974 48 H 0.030 0.970 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -14.383 -24.019 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.101 0.899 4 C -0.006 4.006 5 N -0.339 5.339 6 C 0.306 3.694 7 O -0.426 6.426 8 C -0.175 4.175 9 C -0.052 4.052 10 C -0.158 4.158 11 C -0.203 4.203 12 N -0.132 5.132 13 N -0.062 5.062 14 C -0.032 4.032 15 N -0.129 5.129 16 C -0.018 4.018 17 C -0.169 4.169 18 C -0.112 4.112 19 H 0.089 0.911 20 C 0.035 3.965 21 N -0.401 5.401 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.215 0.785 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.192 0.808 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.342 -15.223 -24.139 28.733 hybrid contribution 0.559 -0.359 0.162 0.683 sum -2.783 -15.581 -23.977 28.730 Atomic orbital electron populations 1.21850 0.94742 1.01951 1.01640 1.21526 0.96757 0.99479 0.93920 0.89928 1.21771 0.99257 0.80369 0.99222 1.48100 1.55871 1.11740 1.18150 1.20562 0.77207 0.89314 0.82339 1.90680 1.55162 1.65572 1.31142 1.21644 1.02509 0.93381 1.00002 1.19625 1.01811 0.85780 0.97939 1.23215 0.90932 0.96425 1.05210 1.24701 0.99773 0.89549 1.06306 1.74054 1.02582 1.18407 1.18205 1.47910 1.01815 1.07832 1.48604 1.22120 1.01078 0.75798 1.04175 1.73994 1.25928 0.93215 1.19749 1.21866 1.00478 0.95022 0.84446 1.22001 1.01809 0.96079 0.96972 1.21359 1.00197 0.94683 0.94922 0.91123 1.20701 0.96294 0.94885 0.84594 1.42738 1.57454 1.37306 1.02637 1.19067 1.24066 1.12096 0.81945 0.89297 1.24683 1.00341 0.99163 0.95135 1.69706 1.48350 1.43229 0.97047 0.86541 0.81539 0.83586 0.76774 1.21136 1.21789 1.20399 0.91860 0.93183 0.92648 0.91640 0.89019 0.88730 0.88406 0.89277 0.88737 0.78515 0.89339 0.87878 0.87951 0.89888 0.91227 0.90924 0.90103 0.95590 0.95262 0.80760 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.39 37.15 0.31 -1.46 16 2 C -0.10 -1.16 2.72 -90.28 -0.25 -1.41 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.31 5.87 -3.49 -0.02 1.29 16 5 N -0.61 -6.71 2.40 -172.50 -0.41 -7.12 16 6 C 0.52 5.96 7.70 -10.99 -0.08 5.88 16 7 O -0.55 -7.87 15.39 5.55 0.09 -7.79 16 8 C -0.13 -1.21 4.02 -27.88 -0.11 -1.32 16 9 C -0.01 -0.10 5.10 -27.88 -0.14 -0.25 16 10 C 0.00 0.05 6.61 -82.25 -0.54 -0.50 16 11 C -0.02 -0.19 12.15 -17.21 -0.21 -0.40 16 12 N -0.29 -2.97 12.05 30.67 0.37 -2.60 16 13 N -0.16 -1.50 4.35 -16.64 -0.07 -1.57 16 14 C 0.11 0.48 11.57 59.85 0.69 1.17 16 15 N -0.29 -2.98 12.04 33.71 0.41 -2.58 16 16 C 0.10 1.08 6.34 -3.71 -0.02 1.06 16 17 C -0.13 -1.70 4.91 -26.61 -0.13 -1.83 16 18 C -0.09 -1.30 1.96 -90.58 -0.18 -1.48 16 19 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 20 C 0.16 2.99 5.18 -4.04 -0.02 2.97 16 21 N -0.76 -17.38 5.12 -59.91 -0.31 -17.68 16 22 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 25 N -0.94 -29.29 13.97 55.49 0.78 -28.51 16 26 Si 0.89 21.72 27.74 -169.99 -4.71 17.00 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 29 H -0.28 -6.26 6.52 56.52 0.37 -5.90 16 30 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.70 5.97 -51.93 -0.31 0.39 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.10 7.00 -51.93 -0.36 0.74 16 35 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 36 H 0.10 0.84 7.94 -51.93 -0.41 0.43 16 37 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.10 0.30 8.14 -51.92 -0.42 -0.12 16 43 H 0.08 0.72 5.93 -51.93 -0.31 0.42 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.97 6.33 -51.93 -0.33 0.64 16 46 H 0.08 1.19 7.15 -51.93 -0.37 0.82 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.03 0.56 6.74 -51.93 -0.35 0.21 16 49 H 0.36 7.98 4.71 -40.82 -0.19 7.79 16 50 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -35.63 392.26 -6.96 -42.59 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.04 Total: 5.58 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.96 Total: -3.22 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.76 Total: -60.07 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.63 -6.96 -42.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185154535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.299 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds