Wall clock time and date at job start Wed Apr 1 2020 00:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.52444 * 2 1 4 4 C 1.53621 * 109.63664 * 239.90753 * 2 1 3 5 5 N 1.46925 * 108.54524 * 294.86521 * 4 2 1 6 6 C 1.34776 * 120.63027 * 126.36612 * 5 4 2 7 7 O 1.21286 * 119.99899 * 359.72037 * 6 5 4 8 8 C 1.50700 * 120.00115 * 179.72157 * 6 5 4 9 9 C 1.53005 * 109.47053 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47053 * 180.02562 * 9 8 6 11 11 C 1.39668 * 127.04935 * 124.99697 * 10 9 8 12 12 N 1.31384 * 105.89833 * 179.73924 * 11 10 9 13 13 N 1.28601 * 108.71746 * 0.26236 * 12 11 10 14 14 C 1.46498 * 124.61656 * 179.97438 * 13 12 11 15 15 N 1.28599 * 110.76175 * 0.02562 * 13 12 11 16 16 C 1.46920 * 118.73836 * 306.09230 * 5 4 2 17 17 C 1.53199 * 108.77579 * 53.86188 * 16 5 4 18 18 C 1.53037 * 109.31078 * 305.36425 * 17 16 5 19 19 H 1.09002 * 109.46029 * 301.35829 * 18 17 16 20 20 C 1.53000 * 109.46273 * 181.38578 * 18 17 16 21 21 N 1.46510 * 109.46903 * 64.99871 * 20 18 17 22 22 C 1.36938 * 119.99730 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00167 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99446 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99379 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00423 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.46766 * 90.00308 * 26 24 22 28 28 H 1.48499 * 109.47152 * 210.00289 * 26 24 22 29 29 H 1.48492 * 109.46868 * 330.00400 * 26 24 22 30 30 H 1.09000 * 109.47816 * 299.92568 * 1 2 3 31 31 H 1.08995 * 109.47251 * 59.92867 * 1 2 3 32 32 H 1.09001 * 109.47377 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.73730 * 175.12901 * 4 2 1 34 34 H 1.09002 * 109.66392 * 54.56276 * 4 2 1 35 35 H 1.08993 * 109.46974 * 59.99986 * 8 6 5 36 36 H 1.08997 * 109.46635 * 299.99981 * 8 6 5 37 37 H 1.09000 * 109.46671 * 60.00207 * 9 8 6 38 38 H 1.08997 * 109.47052 * 299.99961 * 9 8 6 39 39 H 1.08002 * 127.05347 * 0.02562 * 11 10 9 40 40 H 1.09003 * 109.46968 * 90.02700 * 14 13 12 41 41 H 1.08997 * 109.47187 * 210.02998 * 14 13 12 42 42 H 1.09011 * 109.47129 * 330.02897 * 14 13 12 43 43 H 1.09000 * 109.58705 * 173.64534 * 16 5 4 44 44 H 1.08995 * 109.59276 * 294.07197 * 16 5 4 45 45 H 1.08995 * 109.49619 * 65.31397 * 17 16 5 46 46 H 1.08996 * 109.49637 * 185.37662 * 17 16 5 47 47 H 1.08992 * 109.47410 * 184.99874 * 20 18 17 48 48 H 1.08997 * 109.46944 * 305.00315 * 20 18 17 49 49 H 0.97000 * 119.99704 * 0.02562 * 21 20 18 50 50 H 0.97000 * 119.99550 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0462 -0.7255 -1.2519 5 7 1.6516 -2.1383 -1.1693 6 6 0.9748 -2.7223 -2.1779 7 8 0.6815 -2.0794 -3.1637 8 6 0.5826 -4.1742 -2.0810 9 6 -0.1692 -4.5851 -3.3487 10 6 -0.5620 -6.0367 -3.2515 11 6 -1.8453 -6.5719 -3.3830 12 7 -1.7114 -7.8700 -3.2306 13 7 -0.4710 -8.1346 -3.0178 14 6 0.0674 -9.4795 -2.7995 15 7 0.2321 -7.0579 -3.0217 16 6 2.0140 -2.9040 0.0311 17 6 1.5029 -2.1556 1.2663 18 6 2.0407 -0.7230 1.2485 19 1 3.1304 -0.7442 1.2352 20 6 1.5605 0.0173 2.4984 21 7 2.1479 -0.6025 3.6889 22 6 1.8592 -0.1065 4.9322 23 1 1.1988 0.7419 5.0352 24 6 2.4161 -0.6935 6.0601 25 7 2.1390 -0.2164 7.2551 26 14 3.5589 -2.1604 5.8819 27 1 4.9584 -1.6835 5.7437 28 1 3.4468 -3.0241 7.0847 29 1 3.1799 -2.9394 4.6759 30 1 -0.3635 0.5127 0.8906 31 1 -0.3633 0.5149 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1327 -0.6517 -1.2983 34 1 1.6089 -0.2754 -2.1431 35 1 -0.0608 -4.3195 -1.2134 36 1 1.4784 -4.7862 -1.9758 37 1 0.4747 -4.4398 -4.2161 38 1 -1.0649 -3.9730 -3.4544 39 1 -2.7597 -6.0303 -3.5756 40 1 0.3528 -9.9163 -3.7565 41 1 0.9422 -9.4200 -2.1520 42 1 -0.6922 -10.1029 -2.3276 43 1 1.5554 -3.8918 -0.0133 44 1 3.0979 -3.0043 0.0872 45 1 0.4132 -2.1354 1.2543 46 1 1.8474 -2.6629 2.1674 47 1 1.8684 1.0614 2.4431 48 1 0.4736 -0.0383 2.5586 49 1 2.7413 -1.3642 3.5963 50 1 2.5279 -0.6268 8.0432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185154535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:32 Heat of formation + Delta-G solvation = 54.923103 kcal Electronic energy + Delta-G solvation = -29149.285409 eV Core-core repulsion = 25213.339165 eV Total energy + Delta-G solvation = -3935.946244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.50817 -41.45168 -39.34589 -36.68057 -35.86142 -34.82657 -33.89931 -33.42257 -32.53140 -32.14825 -29.05035 -28.68132 -27.67009 -25.74876 -24.89296 -24.12881 -23.29753 -22.80979 -21.72502 -20.66156 -19.90159 -19.08948 -18.42468 -17.90503 -17.74951 -16.87556 -16.79570 -16.53488 -15.99026 -15.82718 -15.62437 -15.31592 -15.20515 -14.87136 -14.68795 -14.42206 -14.28546 -14.01778 -13.78819 -13.72565 -13.55551 -13.48272 -13.23932 -13.04571 -12.83809 -12.67980 -12.63669 -12.35594 -12.15044 -12.03379 -11.92389 -11.84253 -11.78706 -11.53162 -11.37507 -11.25121 -11.23314 -10.93712 -10.70972 -10.05508 -9.56560 -9.26101 -8.01163 -5.34442 0.81773 1.38014 1.42235 1.43461 1.50733 1.52464 1.67234 2.07645 2.50324 3.14818 3.30246 3.49316 3.57531 3.77175 3.79026 3.87287 4.04509 4.13682 4.17006 4.18840 4.29183 4.31201 4.36340 4.39241 4.45469 4.50470 4.57946 4.65723 4.67776 4.76341 4.81048 4.84342 4.87114 4.89462 5.00074 5.06146 5.07731 5.17167 5.18653 5.22096 5.26526 5.32577 5.33699 5.54781 5.65782 5.77540 5.78081 6.22834 6.45884 7.10281 7.20604 7.34517 7.86368 8.06936 9.20703 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002559 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.069106 B =10939.874742 C =12571.666822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.089 0.911 4 C 0.120 3.880 5 N -0.605 5.605 6 C 0.517 3.483 7 O -0.578 6.578 8 C -0.126 4.126 9 C -0.005 4.005 10 C -0.004 4.004 11 C -0.027 4.027 12 N -0.312 5.312 13 N -0.164 5.164 14 C 0.096 3.904 15 N -0.303 5.303 16 C 0.111 3.889 17 C -0.128 4.128 18 C -0.083 4.083 19 H 0.077 0.923 20 C 0.160 3.840 21 N -0.755 5.755 22 C -0.234 4.234 23 H 0.051 0.949 24 C -0.068 4.068 25 N -0.987 5.987 26 Si 0.958 3.042 27 H -0.279 1.279 28 H -0.298 1.298 29 H -0.243 1.243 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.221 0.779 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.018 0.982 48 H 0.022 0.978 49 H 0.367 0.633 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 -16.553 -25.862 30.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.107 0.893 4 C -0.003 4.003 5 N -0.338 5.338 6 C 0.307 3.693 7 O -0.459 6.459 8 C -0.166 4.166 9 C -0.045 4.045 10 C -0.166 4.166 11 C -0.209 4.209 12 N -0.154 5.154 13 N -0.065 5.065 14 C -0.043 4.043 15 N -0.146 5.146 16 C -0.012 4.012 17 C -0.167 4.167 18 C -0.101 4.101 19 H 0.095 0.905 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.365 4.365 23 H 0.069 0.931 24 C -0.259 4.259 25 N -0.638 5.638 26 Si 0.784 3.216 27 H -0.205 1.205 28 H -0.225 1.225 29 H -0.167 1.167 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.238 0.762 40 H 0.122 0.878 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.122 0.878 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.036 0.964 48 H 0.040 0.960 49 H 0.201 0.799 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.327 -17.402 -26.033 31.400 hybrid contribution 0.162 0.404 0.726 0.847 sum -2.165 -16.998 -25.307 30.562 Atomic orbital electron populations 1.21798 0.95056 1.01637 1.01283 1.21467 0.96382 0.99787 0.93350 0.89321 1.21719 0.99979 0.80452 0.98124 1.48156 1.55582 1.11711 1.18303 1.20946 0.76502 0.90068 0.81798 1.90671 1.56343 1.66490 1.32379 1.21604 1.03013 0.91590 1.00441 1.19550 1.01847 0.85545 0.97542 1.23323 0.91166 0.96553 1.05534 1.25160 1.00604 0.89412 1.05714 1.74037 1.03282 1.19046 1.19000 1.48383 1.01550 1.08751 1.47851 1.22514 1.01954 0.74261 1.05524 1.73948 1.26542 0.93837 1.20312 1.21890 1.01415 0.95276 0.82590 1.21944 1.01480 0.95355 0.97872 1.21255 1.00496 0.95127 0.93268 0.90482 1.20842 0.95709 0.94921 0.85088 1.42697 1.57684 1.37563 1.02124 1.19028 1.22537 1.10710 0.84227 0.93100 1.25579 1.02807 1.02976 0.94568 1.69907 1.50370 1.45407 0.98097 0.85370 0.78925 0.79529 0.77745 1.20493 1.22477 1.16698 0.93150 0.92572 0.92928 0.90248 0.89681 0.87748 0.87560 0.90070 0.88254 0.76229 0.87845 0.86637 0.86601 0.87812 0.89817 0.91512 0.91402 0.96355 0.95962 0.79890 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.39 71.98 0.60 -2.67 16 2 C -0.09 -1.98 2.72 -10.57 -0.03 -2.01 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.12 2.40 5.87 86.51 0.51 2.91 16 5 N -0.61 -11.74 2.40 -818.07 -1.96 -13.70 16 6 C 0.52 10.75 7.70 87.66 0.67 11.43 16 7 O -0.58 -15.75 15.39 -3.05 -0.05 -15.80 16 8 C -0.13 -1.96 4.02 29.85 0.12 -1.84 16 9 C -0.01 -0.08 5.10 29.85 0.15 0.07 16 10 C 0.00 -0.06 6.61 42.97 0.28 0.22 16 11 C -0.03 -0.46 12.15 85.11 1.03 0.58 16 12 N -0.31 -5.93 12.05 -56.87 -0.69 -6.62 16 13 N -0.16 -2.78 4.35 -206.55 -0.90 -3.68 16 14 C 0.10 0.67 11.57 127.77 1.48 2.15 16 15 N -0.30 -5.81 12.04 -47.25 -0.57 -6.37 16 16 C 0.11 1.90 6.34 86.37 0.55 2.45 16 17 C -0.13 -3.01 4.91 30.67 0.15 -2.85 16 18 C -0.08 -2.14 1.96 -10.77 -0.02 -2.16 16 19 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 20 C 0.16 5.81 5.18 86.38 0.45 6.26 16 21 N -0.75 -34.04 5.12 -343.44 -1.76 -35.79 16 22 C -0.23 -13.30 10.47 84.03 0.88 -12.42 16 23 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 25 N -0.99 -63.39 13.97 21.65 0.30 -63.09 16 26 Si 0.96 44.23 27.74 68.60 1.90 46.13 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 29 H -0.24 -9.71 6.52 99.48 0.65 -9.06 16 30 H 0.05 1.29 6.58 -2.39 -0.02 1.27 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.25 5.97 -2.39 -0.01 1.23 16 33 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.08 1.88 7.00 -2.39 -0.02 1.87 16 35 H 0.10 1.45 7.69 -2.39 -0.02 1.43 16 36 H 0.11 1.50 7.94 -2.39 -0.02 1.49 16 37 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 38 H 0.10 1.46 8.09 -2.39 -0.02 1.44 16 39 H 0.22 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 43 H 0.10 1.40 5.93 -2.39 -0.01 1.38 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.65 6.33 -2.39 -0.02 1.63 16 46 H 0.07 1.80 7.15 -2.39 -0.02 1.78 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.02 0.85 6.74 -2.39 -0.02 0.83 16 49 H 0.37 15.41 4.71 -92.71 -0.44 14.98 16 50 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -77.98 392.26 4.03 -73.95 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.45 Total: 26.40 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 7.30 Total: -1.43 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -5.57 Total: -129.26 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.05 Total: -15.80 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.90 Total: 46.13 kcal Total: -77.98 4.03 -73.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185154535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.874 kcal (2) G-P(sol) polarization free energy of solvation -77.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds