Wall clock time and date at job start Wed Apr 1 2020 00:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47112 * 2 1 4 4 N 1.46502 * 109.47333 * 119.99816 * 2 1 3 5 5 C 1.34810 * 126.59631 * 275.00000 * 4 2 1 6 6 C 1.36596 * 106.84115 * 180.02562 * 5 4 2 7 7 C 1.47522 * 125.76962 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00200 * 6.28237 * 7 6 5 9 9 N 1.34781 * 119.99723 * 186.28398 * 7 6 5 10 10 C 1.46925 * 120.63196 * 354.52986 * 9 7 6 11 11 C 1.53624 * 108.54451 * 126.36450 * 10 9 7 12 12 C 1.53036 * 109.24107 * 54.85941 * 11 10 9 13 13 H 1.08999 * 109.46129 * 58.52894 * 12 11 10 14 14 C 1.52995 * 109.46109 * 178.48880 * 12 11 10 15 15 N 1.46500 * 109.47213 * 295.06408 * 14 12 11 16 16 C 1.36939 * 119.99874 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00263 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99468 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99501 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00158 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.46951 * 90.00396 * 20 18 16 22 22 H 1.48500 * 109.47102 * 209.99471 * 20 18 16 23 23 H 1.48491 * 109.47121 * 329.99884 * 20 18 16 24 24 C 1.53045 * 109.53712 * 298.51105 * 12 11 10 25 25 H 1.09000 * 109.51971 * 301.39776 * 24 12 11 26 26 C 1.52997 * 109.49877 * 181.31629 * 24 12 11 27 27 C 1.46926 * 120.63106 * 174.80703 * 9 7 6 28 28 N 1.34399 * 108.45530 * 0.23945 * 6 5 4 29 29 N 1.28756 * 109.52641 * 359.59430 * 28 6 5 30 30 H 1.09003 * 109.47205 * 299.99419 * 1 2 3 31 31 H 1.09000 * 109.47591 * 59.99997 * 1 2 3 32 32 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47205 * 240.00581 * 2 1 3 34 34 H 1.08992 * 109.47314 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46894 * 300.00429 * 3 2 1 36 36 H 1.09004 * 109.46922 * 59.99770 * 3 2 1 37 37 H 1.08001 * 126.58151 * 359.97438 * 5 4 2 38 38 H 1.09002 * 109.58420 * 246.20296 * 10 9 7 39 39 H 1.09003 * 109.58366 * 6.62312 * 10 9 7 40 40 H 1.08998 * 109.63774 * 294.86598 * 11 10 9 41 41 H 1.09004 * 109.45652 * 174.73720 * 11 10 9 42 42 H 1.09000 * 109.47426 * 55.06722 * 14 12 11 43 43 H 1.09003 * 109.47206 * 175.06515 * 14 12 11 44 44 H 0.97001 * 119.99997 * 0.02562 * 15 14 12 45 45 H 0.97001 * 119.99564 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.47130 * 300.16357 * 26 24 12 47 47 H 1.09007 * 109.47055 * 60.16400 * 26 24 12 48 48 H 1.09001 * 109.47114 * 180.15593 * 26 24 12 49 49 H 1.09003 * 109.58778 * 353.37028 * 27 9 7 50 50 H 1.08989 * 109.58461 * 113.65626 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1973 -0.1514 2.4187 6 6 2.6644 -1.1488 3.2267 7 6 3.0019 -1.0136 4.6564 8 8 2.7642 0.0254 5.2416 9 7 3.5737 -2.0418 5.3139 10 6 3.7581 -3.3420 4.6550 11 6 5.2358 -3.7447 4.7735 12 6 5.6477 -3.7234 6.2473 13 1 5.0139 -4.4076 6.8114 14 6 7.1085 -4.1602 6.3746 15 7 7.2388 -5.5575 5.9544 16 6 8.4635 -6.1696 5.9825 17 1 9.3332 -5.6223 6.3148 18 6 8.5870 -7.4935 5.5838 19 7 9.7640 -8.0820 5.6113 20 14 7.0828 -8.4399 5.0084 21 1 6.9240 -8.2725 3.5413 22 1 7.2526 -9.8804 5.3265 23 1 5.8761 -7.9192 5.6995 24 6 5.4890 -2.3062 6.8027 25 1 6.1038 -1.6171 6.2236 26 6 5.9320 -2.2789 8.2668 27 6 4.0192 -1.8855 6.7053 28 7 2.7700 -2.2728 2.4974 29 7 2.3901 -2.0393 1.2895 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.0086 0.8729 2.7043 38 1 3.1324 -4.0902 5.1417 39 1 3.4832 -3.2608 3.6033 40 1 5.8530 -3.0424 4.2131 41 1 5.3718 -4.7490 4.3723 42 1 7.7326 -3.5304 5.7407 43 1 7.4281 -4.0614 7.4121 44 1 6.4577 -6.0490 5.6556 45 1 9.8504 -9.0070 5.3324 46 1 5.3177 -2.9690 8.8452 47 1 6.9779 -2.5782 8.3356 48 1 5.8162 -1.2699 8.6627 49 1 3.9168 -0.8431 7.0069 50 1 3.4128 -2.5154 7.3560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185380680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:22 Heat of formation + Delta-G solvation = 80.110955 kcal Electronic energy + Delta-G solvation = -29600.846716 eV Core-core repulsion = 25665.992700 eV Total energy + Delta-G solvation = -3934.854017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.61118 -40.05880 -37.98985 -36.99220 -35.06825 -33.61955 -32.00153 -31.88917 -31.07499 -30.57583 -28.10574 -27.10631 -26.92695 -24.50461 -24.12865 -22.89212 -22.24986 -21.24158 -21.12976 -20.25342 -19.40437 -17.74399 -17.48233 -16.59719 -16.43081 -16.09401 -15.36922 -15.15576 -14.99182 -14.68819 -14.48892 -14.10010 -14.08324 -13.85843 -13.39390 -13.31421 -13.20806 -13.14198 -12.99394 -12.81565 -12.44832 -12.43423 -12.24483 -11.96263 -11.82748 -11.77228 -11.70846 -11.26278 -11.11652 -10.81901 -10.80226 -10.72782 -10.40189 -10.30305 -10.07796 -10.01890 -9.58651 -9.57852 -9.51205 -8.81323 -8.55278 -7.14027 -5.70744 -3.05095 0.84283 1.46529 1.62186 2.89328 3.15161 3.42772 3.45734 3.50217 3.72934 3.89012 4.07081 4.26876 4.31496 4.58218 4.65195 4.74552 4.76892 4.80536 4.89644 4.93834 4.95028 5.06017 5.09590 5.20387 5.24870 5.38304 5.40049 5.43613 5.56109 5.60309 5.67198 5.76428 5.82909 5.86239 5.91008 6.01285 6.02795 6.20281 6.24152 6.29988 6.42596 6.49474 6.52669 6.67211 6.83431 6.92716 7.33241 7.68324 8.06058 8.06715 8.48774 9.28634 10.01264 10.21806 11.47971 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.002847 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.234798 B = 9830.923874 C =11297.315396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 C -0.169 4.169 4 N -0.353 5.353 5 C 0.093 3.907 6 C -0.094 4.094 7 C 0.603 3.397 8 O -0.549 6.549 9 N -0.589 5.589 10 C 0.064 3.936 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.071 0.929 14 C 0.161 3.839 15 N -0.755 5.755 16 C -0.240 4.240 17 H 0.089 0.911 18 C 0.002 3.998 19 N -0.937 5.937 20 Si 0.883 3.117 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.095 4.095 25 H 0.074 0.926 26 C -0.147 4.147 27 C 0.118 3.882 28 N -0.203 5.203 29 N -0.063 5.063 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.202 0.798 38 H 0.064 0.936 39 H 0.143 0.857 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.024 0.976 43 H 0.031 0.969 44 H 0.360 0.640 45 H 0.258 0.742 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.052 0.948 49 H 0.090 0.910 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.420 21.864 -9.601 32.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.041 3.959 3 C -0.228 4.228 4 N -0.139 5.139 5 C -0.064 4.064 6 C -0.233 4.233 7 C 0.389 3.611 8 O -0.427 6.427 9 N -0.320 5.320 10 C -0.059 4.059 11 C -0.160 4.160 12 C -0.114 4.114 13 H 0.089 0.911 14 C 0.034 3.966 15 N -0.401 5.401 16 C -0.370 4.370 17 H 0.107 0.893 18 C -0.194 4.194 19 N -0.585 5.585 20 Si 0.713 3.287 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.115 4.115 25 H 0.092 0.908 26 C -0.205 4.205 27 C -0.004 4.004 28 N -0.075 5.075 29 N -0.042 5.042 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.219 0.781 38 H 0.083 0.917 39 H 0.159 0.841 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.049 0.951 44 H 0.193 0.807 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.109 0.891 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.176 21.068 -10.072 31.523 hybrid contribution -1.011 -0.032 -0.024 1.012 sum -22.187 21.036 -10.096 32.198 Atomic orbital electron populations 1.22261 0.92406 1.03941 1.03864 1.21679 0.95720 0.93473 0.85015 1.22276 1.02827 0.93235 1.04424 1.50761 1.44300 1.09684 1.09165 1.23214 0.97558 1.01071 0.84513 1.21459 1.14041 0.90699 0.97067 1.16802 0.77528 0.83346 0.83430 1.90773 1.55487 1.28679 1.67719 1.47924 1.58213 1.12102 1.13749 1.23078 0.97329 0.82862 1.02598 1.21962 0.94707 1.02604 0.96747 1.21428 0.98663 0.95452 0.95857 0.91093 1.20733 0.92175 0.86098 0.97587 1.42741 1.07606 1.09034 1.80720 1.19068 0.86307 0.94731 1.36875 0.89337 1.24671 0.96239 0.96764 1.01678 1.69711 1.21820 1.12625 1.54337 0.86558 0.83513 0.79681 0.78903 1.21012 1.21827 1.20268 1.21436 0.95242 0.97423 0.97414 0.90758 1.21840 1.02583 1.01285 0.94786 1.21759 0.94715 1.02861 0.81107 1.74142 1.11866 1.22727 0.98753 1.82062 1.17361 0.91800 1.12980 0.91436 0.89606 0.91149 0.86646 0.90972 0.89202 0.91029 0.78138 0.91720 0.84109 0.91680 0.90212 0.95785 0.95087 0.80689 0.93161 0.92509 0.91184 0.92908 0.89130 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 9.52 37.16 0.35 -0.18 16 2 C 0.14 0.62 3.96 -67.93 -0.27 0.35 16 3 C -0.17 -0.42 8.85 37.16 0.33 -0.09 16 4 N -0.35 -2.95 3.54 -54.56 -0.19 -3.14 16 5 C 0.09 0.83 10.41 -16.84 -0.18 0.66 16 6 C -0.09 -1.15 6.78 -83.55 -0.57 -1.72 16 7 C 0.60 8.41 7.69 -12.47 -0.10 8.32 16 8 O -0.55 -8.50 16.31 5.29 0.09 -8.41 16 9 N -0.59 -8.05 2.97 -173.74 -0.52 -8.56 16 10 C 0.06 0.89 6.35 -3.49 -0.02 0.87 16 11 C -0.12 -1.90 5.26 -26.39 -0.14 -2.04 16 12 C -0.10 -1.50 1.73 -90.58 -0.16 -1.65 16 13 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 14 C 0.16 3.17 5.41 -4.04 -0.02 3.15 16 15 N -0.76 -18.30 5.12 -59.91 -0.31 -18.61 16 16 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 19 N -0.94 -30.01 13.97 55.49 0.78 -29.23 16 20 Si 0.88 22.59 27.74 -169.99 -4.71 17.87 16 21 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 24 C -0.10 -1.27 2.41 -90.50 -0.22 -1.49 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 26 C -0.15 -1.78 8.81 37.16 0.33 -1.45 16 27 C 0.12 1.50 5.70 -3.71 -0.02 1.47 16 28 N -0.20 -2.67 8.64 32.85 0.28 -2.39 16 29 N -0.06 -0.76 13.78 60.35 0.83 0.08 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.07 0.15 7.23 -51.93 -0.38 -0.23 16 37 H 0.20 1.20 7.34 -52.49 -0.39 0.81 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.14 1.99 3.59 -131.88 -0.47 1.52 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.36 7.15 -51.93 -0.37 0.99 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.03 0.62 6.14 -51.93 -0.32 0.30 16 44 H 0.36 8.51 4.70 -40.82 -0.19 8.32 16 45 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.92 6.30 -51.93 -0.33 0.59 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.09 1.16 7.04 -51.93 -0.37 0.79 16 50 H 0.07 0.81 8.14 -51.94 -0.42 0.39 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -35.51 391.50 -7.10 -42.61 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.32 Total: 4.83 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.93 Total: -0.95 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: 0.88 Total: -61.85 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.51 -7.10 -42.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185380680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.721 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds