Wall clock time and date at job start Wed Apr 1 2020 00:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47112 * 2 1 4 4 N 1.46502 * 109.47333 * 119.99816 * 2 1 3 5 5 C 1.34810 * 126.59631 * 275.00000 * 4 2 1 6 6 C 1.36596 * 106.84115 * 180.02562 * 5 4 2 7 7 C 1.47522 * 125.76962 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00200 * 6.28237 * 7 6 5 9 9 N 1.34781 * 119.99723 * 186.28398 * 7 6 5 10 10 C 1.46925 * 120.63196 * 354.52986 * 9 7 6 11 11 C 1.53624 * 108.54451 * 126.36450 * 10 9 7 12 12 C 1.53036 * 109.24107 * 54.85941 * 11 10 9 13 13 H 1.08999 * 109.46129 * 58.52894 * 12 11 10 14 14 C 1.52995 * 109.46109 * 178.48880 * 12 11 10 15 15 N 1.46500 * 109.47213 * 295.06408 * 14 12 11 16 16 C 1.36939 * 119.99874 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00263 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99468 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99501 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00158 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.46951 * 90.00396 * 20 18 16 22 22 H 1.48500 * 109.47102 * 209.99471 * 20 18 16 23 23 H 1.48491 * 109.47121 * 329.99884 * 20 18 16 24 24 C 1.53045 * 109.53712 * 298.51105 * 12 11 10 25 25 H 1.09000 * 109.51971 * 301.39776 * 24 12 11 26 26 C 1.52997 * 109.49877 * 181.31629 * 24 12 11 27 27 C 1.46926 * 120.63106 * 174.80703 * 9 7 6 28 28 N 1.34399 * 108.45530 * 0.23945 * 6 5 4 29 29 N 1.28756 * 109.52641 * 359.59430 * 28 6 5 30 30 H 1.09003 * 109.47205 * 299.99419 * 1 2 3 31 31 H 1.09000 * 109.47591 * 59.99997 * 1 2 3 32 32 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47205 * 240.00581 * 2 1 3 34 34 H 1.08992 * 109.47314 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46894 * 300.00429 * 3 2 1 36 36 H 1.09004 * 109.46922 * 59.99770 * 3 2 1 37 37 H 1.08001 * 126.58151 * 359.97438 * 5 4 2 38 38 H 1.09002 * 109.58420 * 246.20296 * 10 9 7 39 39 H 1.09003 * 109.58366 * 6.62312 * 10 9 7 40 40 H 1.08998 * 109.63774 * 294.86598 * 11 10 9 41 41 H 1.09004 * 109.45652 * 174.73720 * 11 10 9 42 42 H 1.09000 * 109.47426 * 55.06722 * 14 12 11 43 43 H 1.09003 * 109.47206 * 175.06515 * 14 12 11 44 44 H 0.97001 * 119.99997 * 0.02562 * 15 14 12 45 45 H 0.97001 * 119.99564 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.47130 * 300.16357 * 26 24 12 47 47 H 1.09007 * 109.47055 * 60.16400 * 26 24 12 48 48 H 1.09001 * 109.47114 * 180.15593 * 26 24 12 49 49 H 1.09003 * 109.58778 * 353.37028 * 27 9 7 50 50 H 1.08989 * 109.58461 * 113.65626 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1973 -0.1514 2.4187 6 6 2.6644 -1.1488 3.2267 7 6 3.0019 -1.0136 4.6564 8 8 2.7642 0.0254 5.2416 9 7 3.5737 -2.0418 5.3139 10 6 3.7581 -3.3420 4.6550 11 6 5.2358 -3.7447 4.7735 12 6 5.6477 -3.7234 6.2473 13 1 5.0139 -4.4076 6.8114 14 6 7.1085 -4.1602 6.3746 15 7 7.2388 -5.5575 5.9544 16 6 8.4635 -6.1696 5.9825 17 1 9.3332 -5.6223 6.3148 18 6 8.5870 -7.4935 5.5838 19 7 9.7640 -8.0820 5.6113 20 14 7.0828 -8.4399 5.0084 21 1 6.9240 -8.2725 3.5413 22 1 7.2526 -9.8804 5.3265 23 1 5.8761 -7.9192 5.6995 24 6 5.4890 -2.3062 6.8027 25 1 6.1038 -1.6171 6.2236 26 6 5.9320 -2.2789 8.2668 27 6 4.0192 -1.8855 6.7053 28 7 2.7700 -2.2728 2.4974 29 7 2.3901 -2.0393 1.2895 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.0086 0.8729 2.7043 38 1 3.1324 -4.0902 5.1417 39 1 3.4832 -3.2608 3.6033 40 1 5.8530 -3.0424 4.2131 41 1 5.3718 -4.7490 4.3723 42 1 7.7326 -3.5304 5.7407 43 1 7.4281 -4.0614 7.4121 44 1 6.4577 -6.0490 5.6556 45 1 9.8504 -9.0070 5.3324 46 1 5.3177 -2.9690 8.8452 47 1 6.9779 -2.5782 8.3356 48 1 5.8162 -1.2699 8.6627 49 1 3.9168 -0.8431 7.0069 50 1 3.4128 -2.5154 7.3560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185380680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:21 Heat of formation + Delta-G solvation = 56.254919 kcal Electronic energy + Delta-G solvation = -29601.881192 eV Core-core repulsion = 25665.992700 eV Total energy + Delta-G solvation = -3935.888492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.40042 -41.13860 -39.19829 -37.49852 -36.68092 -35.02233 -33.62250 -32.55858 -32.31302 -31.90202 -28.67185 -28.31991 -27.87181 -25.61740 -25.10310 -24.35265 -23.38214 -22.62627 -21.82821 -21.34854 -20.51284 -19.59357 -18.49345 -17.53724 -17.20650 -17.03173 -16.65321 -16.20380 -15.97578 -15.91726 -15.57349 -15.43207 -15.23518 -14.90495 -14.62145 -14.48630 -14.29226 -14.19475 -13.95223 -13.60435 -13.26904 -13.24865 -13.17710 -13.13689 -12.91416 -12.83948 -12.73926 -12.55795 -12.26155 -12.15831 -12.06913 -11.91205 -11.84813 -11.63434 -11.40586 -11.36633 -11.22279 -10.99197 -10.67608 -10.42011 -9.64201 -9.26321 -8.02285 -5.34954 0.11971 0.53203 1.03631 1.38042 1.41601 1.48625 1.90261 2.16639 2.48962 3.03337 3.28746 3.29162 3.53480 3.59567 3.77480 3.78909 3.85277 3.88897 3.99646 4.02718 4.08750 4.19623 4.22656 4.34929 4.51515 4.58623 4.60563 4.63487 4.64581 4.70146 4.76262 4.77326 4.82585 4.87194 5.00311 5.06756 5.11211 5.14228 5.17618 5.20236 5.25237 5.29929 5.42438 5.47702 5.52851 5.67575 5.76562 6.22043 6.28187 6.79927 7.06100 7.08898 7.85618 8.05511 9.19512 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.002847 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.234798 B = 9830.923874 C =11297.315396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.165 4.165 4 N -0.339 5.339 5 C 0.111 3.889 6 C -0.121 4.121 7 C 0.602 3.398 8 O -0.567 6.567 9 N -0.593 5.593 10 C 0.072 3.928 11 C -0.118 4.118 12 C -0.084 4.084 13 H 0.076 0.924 14 C 0.160 3.840 15 N -0.756 5.756 16 C -0.233 4.233 17 H 0.054 0.946 18 C -0.065 4.065 19 N -0.985 5.985 20 Si 0.953 3.047 21 H -0.278 1.278 22 H -0.295 1.295 23 H -0.249 1.249 24 C -0.087 4.087 25 H 0.066 0.934 26 C -0.144 4.144 27 C 0.121 3.879 28 N -0.225 5.225 29 N -0.090 5.090 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.233 0.767 38 H 0.073 0.927 39 H 0.143 0.857 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.014 0.986 43 H 0.034 0.966 44 H 0.366 0.634 45 H 0.258 0.742 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.093 0.907 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.495 23.638 -10.295 35.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.033 3.967 3 C -0.223 4.223 4 N -0.125 5.125 5 C -0.047 4.047 6 C -0.261 4.261 7 C 0.390 3.610 8 O -0.447 6.447 9 N -0.323 5.323 10 C -0.051 4.051 11 C -0.156 4.156 12 C -0.103 4.103 13 H 0.094 0.906 14 C 0.034 3.966 15 N -0.402 5.402 16 C -0.364 4.364 17 H 0.072 0.928 18 C -0.257 4.257 19 N -0.636 5.636 20 Si 0.780 3.220 21 H -0.204 1.204 22 H -0.221 1.221 23 H -0.174 1.174 24 C -0.106 4.106 25 H 0.084 0.916 26 C -0.202 4.202 27 C -0.001 4.001 28 N -0.096 5.096 29 N -0.069 5.069 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.249 0.751 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.032 0.968 43 H 0.051 0.949 44 H 0.199 0.801 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.112 0.888 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.286 22.877 -10.783 35.063 hybrid contribution -0.007 -0.427 0.135 0.448 sum -24.293 22.450 -10.648 34.749 Atomic orbital electron populations 1.22258 0.91195 1.03260 1.05257 1.22142 0.96611 0.94350 0.83595 1.22305 1.02166 0.91809 1.06066 1.51099 1.42661 1.08635 1.10081 1.23643 0.95420 1.01601 0.83995 1.21475 1.16125 0.91707 0.96766 1.16998 0.77066 0.82953 0.84022 1.90751 1.56427 1.29191 1.68325 1.47977 1.58237 1.12010 1.14081 1.22985 0.95824 0.83187 1.03085 1.21887 0.96022 1.01453 0.96266 1.21326 0.95588 0.97075 0.96325 0.90582 1.20880 0.95024 0.83621 0.97096 1.42732 1.06070 1.10644 1.80735 1.19038 0.87108 0.94736 1.35476 0.92795 1.25516 0.99592 0.97961 1.02588 1.69894 1.24524 1.13000 1.56171 0.85428 0.80301 0.77603 0.78650 1.20395 1.22141 1.17393 1.21345 0.95945 0.95350 0.97996 0.91572 1.21807 1.01650 1.02753 0.93951 1.21777 0.94034 1.03303 0.81004 1.74040 1.12678 1.23617 0.99312 1.81971 1.18465 0.93860 1.12602 0.91231 0.87016 0.92835 0.86234 0.91989 0.86814 0.90168 0.75103 0.90842 0.84031 0.92776 0.91694 0.96843 0.94861 0.80056 0.93359 0.91770 0.92649 0.90909 0.88844 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.52 71.98 0.69 0.04 16 2 C 0.13 0.85 3.96 44.99 0.18 1.03 16 3 C -0.17 -0.32 8.85 71.98 0.64 0.32 16 4 N -0.34 -5.12 3.54 -326.53 -1.16 -6.28 16 5 C 0.11 1.79 10.41 83.85 0.87 2.66 16 6 C -0.12 -2.85 6.78 40.82 0.28 -2.57 16 7 C 0.60 16.09 7.69 86.69 0.67 16.76 16 8 O -0.57 -16.72 16.31 -4.00 -0.07 -16.79 16 9 N -0.59 -15.41 2.97 -821.84 -2.44 -17.85 16 10 C 0.07 1.93 6.35 86.51 0.55 2.48 16 11 C -0.12 -3.60 5.26 30.82 0.16 -3.44 16 12 C -0.08 -2.56 1.73 -10.77 -0.02 -2.58 16 13 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 14 C 0.16 6.29 5.41 86.38 0.47 6.75 16 15 N -0.76 -36.51 5.12 -343.46 -1.76 -38.27 16 16 C -0.23 -13.74 10.47 84.03 0.88 -12.86 16 17 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 19 N -0.99 -64.73 13.97 21.65 0.30 -64.43 16 20 Si 0.95 46.67 27.74 68.60 1.90 48.58 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 23 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 24 C -0.09 -2.18 2.41 -10.72 -0.03 -2.21 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 C -0.14 -3.23 8.81 71.98 0.63 -2.59 16 27 C 0.12 2.83 5.70 86.36 0.49 3.32 16 28 N -0.22 -5.82 8.64 -50.00 -0.43 -6.25 16 29 N -0.09 -2.10 13.78 37.02 0.51 -1.59 16 30 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.12 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.08 0.04 7.23 -2.39 -0.02 0.03 16 37 H 0.23 2.07 7.34 -2.91 -0.02 2.04 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.14 3.93 3.59 -105.84 -0.38 3.55 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 2.17 7.15 -2.39 -0.02 2.16 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.03 1.32 6.14 -2.39 -0.01 1.31 16 44 H 0.37 16.81 4.70 -92.71 -0.44 16.37 16 45 H 0.26 16.09 8.31 -92.71 -0.77 15.31 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.05 1.41 6.30 -2.38 -0.02 1.39 16 48 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.09 2.19 7.04 -2.39 -0.02 2.18 16 50 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -78.42 391.50 3.87 -74.56 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.08 Total: 24.71 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.92 Total: 3.60 kcal Atomic # 7 Polarization: -129.69 SS G_CDS: -4.97 Total: -134.66 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.07 Total: -16.79 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.90 Total: 48.58 kcal Total: -78.42 3.87 -74.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185380680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.811 kcal (2) G-P(sol) polarization free energy of solvation -78.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds