Wall clock time and date at job start Wed Apr 1 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46845 * 2 1 4 4 N 1.46500 * 109.47109 * 120.00365 * 2 1 3 5 5 C 1.34804 * 126.59334 * 275.00251 * 4 2 1 6 6 C 1.36600 * 106.84119 * 179.76193 * 5 4 2 7 7 C 1.47521 * 125.77224 * 180.26183 * 6 5 4 8 8 O 1.21591 * 120.00080 * 353.27550 * 7 6 5 9 9 N 1.34774 * 119.99837 * 173.27406 * 7 6 5 10 10 C 1.46930 * 120.63374 * 3.78759 * 9 7 6 11 11 C 1.52761 * 109.00996 * 233.58416 * 10 9 7 12 12 C 1.53041 * 109.38106 * 305.58512 * 11 10 9 13 13 H 1.08995 * 109.46176 * 301.22262 * 12 11 10 14 14 C 1.53001 * 109.44738 * 181.25365 * 12 11 10 15 15 N 1.46494 * 109.47183 * 64.93798 * 14 12 11 16 16 C 1.36936 * 120.00149 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99852 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99913 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00068 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47239 * 89.99322 * 20 18 16 22 22 H 1.48497 * 109.47433 * 209.99688 * 20 18 16 23 23 H 1.48502 * 109.46983 * 329.99550 * 20 18 16 24 24 C 1.53041 * 109.53863 * 61.24183 * 12 11 10 25 25 H 1.09003 * 109.50201 * 58.58509 * 24 12 11 26 26 C 1.53005 * 109.50074 * 178.67975 * 24 12 11 27 27 C 1.46926 * 120.62989 * 184.06609 * 9 7 6 28 28 N 1.34399 * 108.45642 * 0.23162 * 6 5 4 29 29 N 1.28759 * 109.52555 * 0.02562 * 28 6 5 30 30 H 1.08997 * 109.47289 * 299.99780 * 1 2 3 31 31 H 1.09003 * 109.47564 * 60.00101 * 1 2 3 32 32 H 1.09001 * 109.47499 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46516 * 240.00008 * 2 1 3 34 34 H 1.09007 * 109.46637 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47370 * 299.99892 * 3 2 1 36 36 H 1.09003 * 109.46846 * 60.00469 * 3 2 1 37 37 H 1.08002 * 126.58452 * 0.02562 * 5 4 2 38 38 H 1.09005 * 109.58383 * 353.41614 * 10 9 7 39 39 H 1.09001 * 109.58560 * 113.83980 * 10 9 7 40 40 H 1.08993 * 109.56201 * 185.54958 * 11 10 9 41 41 H 1.08998 * 109.38652 * 65.50946 * 11 10 9 42 42 H 1.08998 * 109.47175 * 184.94363 * 14 12 11 43 43 H 1.09000 * 109.46880 * 304.94235 * 14 12 11 44 44 H 0.97002 * 119.99673 * 0.02562 * 15 14 12 45 45 H 0.97009 * 120.00093 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.47176 * 179.83546 * 26 24 12 47 47 H 1.08997 * 109.46590 * 299.84360 * 26 24 12 48 48 H 1.09002 * 109.46280 * 59.83592 * 26 24 12 49 49 H 1.09001 * 109.59122 * 246.15409 * 27 9 7 50 50 H 1.08996 * 109.58914 * 6.58490 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1972 -0.1516 2.4187 6 6 2.6586 -1.1505 3.2281 7 6 2.9883 -1.0174 4.6598 8 8 2.9732 0.0777 5.1879 9 7 3.3062 -2.1097 5.3824 10 6 3.4096 -3.4276 4.7412 11 6 2.5165 -4.4161 5.4887 12 6 2.8836 -4.4092 6.9744 13 1 3.9331 -4.6793 7.0904 14 6 2.0112 -5.4215 7.7195 15 7 2.3213 -6.7735 7.2484 16 6 1.6600 -7.8506 7.7752 17 1 0.9100 -7.7034 8.5383 18 6 1.9542 -9.1318 7.3292 19 7 2.8686 -9.3112 6.3996 20 14 1.0516 -10.6011 8.0472 21 1 -0.1699 -10.8711 7.2470 22 1 1.9384 -11.7917 8.0138 23 1 0.6684 -10.3086 9.4518 24 6 2.6500 -3.0116 7.5528 25 1 1.6059 -2.7306 7.4149 26 6 2.9859 -3.0139 9.0455 27 6 3.5501 -2.0062 6.8276 28 7 2.7608 -2.2754 2.4996 29 7 2.3926 -2.0388 1.2887 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 2.0077 0.8725 2.7046 38 1 3.0839 -3.3556 3.7034 39 1 4.4430 -3.7723 4.7789 40 1 2.6608 -5.4174 5.0830 41 1 1.4735 -4.1225 5.3703 42 1 2.2101 -5.3548 8.7891 43 1 0.9600 -5.2033 7.5311 44 1 2.9952 -6.9057 6.5633 45 1 3.0740 -10.2065 6.0876 46 1 2.8222 -2.0177 9.4563 47 1 2.3453 -3.7294 9.5609 48 1 4.0298 -3.2964 9.1824 49 1 4.5951 -2.2327 7.0391 50 1 3.3171 -0.9967 7.1662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185380681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:26 Heat of formation + Delta-G solvation = 75.887846 kcal Electronic energy + Delta-G solvation = -29504.461969 eV Core-core repulsion = 25569.424825 eV Total energy + Delta-G solvation = -3935.037144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53735 -39.97168 -37.88119 -36.93101 -34.90023 -33.52768 -31.93853 -31.81972 -31.00110 -30.19410 -28.05203 -26.85212 -26.77166 -24.43039 -24.05620 -23.05089 -22.12924 -21.22434 -21.16243 -20.13651 -19.26546 -17.63181 -17.04832 -16.50679 -16.33220 -16.00525 -15.36700 -15.04505 -14.88033 -14.71004 -14.40579 -14.02532 -13.85625 -13.73636 -13.44533 -13.26866 -13.18089 -13.01692 -12.93399 -12.52471 -12.48753 -12.34674 -12.19302 -11.87063 -11.75367 -11.66033 -11.58181 -11.01714 -10.91613 -10.76198 -10.71731 -10.64698 -10.29633 -10.20803 -10.06906 -9.93275 -9.55111 -9.50397 -9.47235 -8.78240 -8.45715 -6.82078 -5.69382 -2.96897 0.91067 1.54630 1.68887 2.98019 3.23336 3.48006 3.52939 3.54664 3.78481 3.96547 4.12529 4.31917 4.38738 4.64898 4.65081 4.79401 4.83597 4.89705 4.98133 5.00316 5.05358 5.15704 5.18149 5.28164 5.39614 5.44016 5.47391 5.56575 5.64708 5.69267 5.77355 5.88395 5.95020 6.02784 6.09179 6.10636 6.18061 6.31318 6.37967 6.41912 6.55100 6.62791 6.69590 6.81329 6.95835 7.05609 7.42918 7.76422 7.76708 8.14463 8.50098 9.60944 10.20800 10.55458 11.53660 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.002624 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.430103 B =10666.928028 C =12155.261373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 C -0.169 4.169 4 N -0.354 5.354 5 C 0.092 3.908 6 C -0.093 4.093 7 C 0.602 3.398 8 O -0.551 6.551 9 N -0.588 5.588 10 C 0.066 3.934 11 C -0.121 4.121 12 C -0.090 4.090 13 H 0.071 0.929 14 C 0.157 3.843 15 N -0.731 5.731 16 C -0.235 4.235 17 H 0.069 0.931 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.097 4.097 25 H 0.072 0.928 26 C -0.146 4.146 27 C 0.118 3.882 28 N -0.200 5.200 29 N -0.064 5.064 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.201 0.799 38 H 0.141 0.859 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.015 0.985 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 25.389 -12.623 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.041 3.959 3 C -0.227 4.227 4 N -0.140 5.140 5 C -0.065 4.065 6 C -0.232 4.232 7 C 0.388 3.612 8 O -0.429 6.429 9 N -0.318 5.318 10 C -0.057 4.057 11 C -0.159 4.159 12 C -0.109 4.109 13 H 0.090 0.910 14 C 0.029 3.971 15 N -0.376 5.376 16 C -0.367 4.367 17 H 0.086 0.914 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.209 1.209 24 C -0.116 4.116 25 H 0.090 0.910 26 C -0.204 4.204 27 C -0.004 4.004 28 N -0.073 5.073 29 N -0.042 5.042 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.218 0.782 38 H 0.157 0.843 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.033 0.967 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.198 24.553 -13.058 27.835 hybrid contribution -0.437 -0.157 0.575 0.739 sum -1.634 24.395 -12.483 27.452 Atomic orbital electron populations 1.22266 0.92380 1.04066 1.03834 1.21664 0.95765 0.93389 0.85034 1.22271 1.02707 0.93324 1.04407 1.50761 1.44290 1.09789 1.09155 1.23200 0.97773 1.00966 0.84530 1.21465 1.14315 0.90402 0.97038 1.16802 0.76867 0.84190 0.83320 1.90766 1.55016 1.25820 1.71325 1.47952 1.66859 1.08225 1.08814 1.22887 1.00700 0.80851 1.01214 1.21801 0.99165 0.99883 0.95057 1.21367 1.00859 0.93744 0.94957 0.91035 1.20751 0.95479 0.85188 0.95639 1.42384 1.47324 1.00123 1.47737 1.19227 1.15273 0.85783 1.16407 0.91351 1.24720 0.99557 0.97375 0.99483 1.69659 1.35068 1.21128 1.32418 0.86210 0.78846 0.82828 0.78446 1.21827 1.21836 1.20859 1.21456 0.99803 0.95188 0.95185 0.90994 1.21829 1.02196 1.01500 0.94867 1.21756 0.99359 1.00742 0.78590 1.74203 1.12288 1.22262 0.98522 1.82072 1.17591 0.91770 1.12792 0.91425 0.89646 0.91042 0.86694 0.91062 0.89246 0.91037 0.78194 0.84309 0.91620 0.89393 0.92250 0.95925 0.96705 0.78254 0.93597 0.93051 0.91342 0.92497 0.91312 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 9.52 37.16 0.35 -0.31 16 2 C 0.14 0.68 3.96 -67.93 -0.27 0.41 16 3 C -0.17 -0.45 8.85 37.16 0.33 -0.12 16 4 N -0.35 -3.14 3.54 -54.56 -0.19 -3.33 16 5 C 0.09 0.88 10.41 -16.84 -0.18 0.70 16 6 C -0.09 -1.21 6.77 -83.55 -0.57 -1.78 16 7 C 0.60 8.84 7.69 -12.48 -0.10 8.74 16 8 O -0.55 -8.89 16.30 5.29 0.09 -8.80 16 9 N -0.59 -8.53 2.98 -174.26 -0.52 -9.04 16 10 C 0.07 0.99 6.28 -3.93 -0.02 0.96 16 11 C -0.12 -2.03 5.23 -26.83 -0.14 -2.17 16 12 C -0.09 -1.52 1.73 -90.58 -0.16 -1.68 16 13 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 14 C 0.16 3.24 5.41 -4.04 -0.02 3.22 16 15 N -0.73 -18.84 5.32 -59.91 -0.32 -19.16 16 16 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 19 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 20 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.10 -1.36 2.41 -90.50 -0.22 -1.58 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 C -0.15 -1.87 8.82 37.16 0.33 -1.54 16 27 C 0.12 1.59 5.71 -3.71 -0.02 1.57 16 28 N -0.20 -2.79 8.64 32.85 0.28 -2.51 16 29 N -0.06 -0.80 13.79 60.35 0.83 0.03 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.07 0.17 7.23 -51.93 -0.38 -0.21 16 37 H 0.20 1.30 7.34 -52.49 -0.39 0.91 16 38 H 0.14 2.11 3.62 -129.73 -0.47 1.64 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.67 7.15 -51.93 -0.37 1.30 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.38 10.32 6.84 -40.82 -0.28 10.04 16 45 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.94 6.30 -51.93 -0.33 0.61 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.09 1.21 7.03 -51.93 -0.36 0.84 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -34.52 394.55 -7.47 -41.99 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.36 Total: 6.00 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.93 Total: -1.01 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.81 Total: -61.97 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.52 -7.47 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185380681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.876 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds