Wall clock time and date at job start Wed Apr 1 2020 00:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46845 * 2 1 4 4 N 1.46500 * 109.47109 * 120.00365 * 2 1 3 5 5 C 1.34804 * 126.59334 * 275.00251 * 4 2 1 6 6 C 1.36600 * 106.84119 * 179.76193 * 5 4 2 7 7 C 1.47521 * 125.77224 * 180.26183 * 6 5 4 8 8 O 1.21591 * 120.00080 * 353.27550 * 7 6 5 9 9 N 1.34774 * 119.99837 * 173.27406 * 7 6 5 10 10 C 1.46930 * 120.63374 * 3.78759 * 9 7 6 11 11 C 1.52761 * 109.00996 * 233.58416 * 10 9 7 12 12 C 1.53041 * 109.38106 * 305.58512 * 11 10 9 13 13 H 1.08995 * 109.46176 * 301.22262 * 12 11 10 14 14 C 1.53001 * 109.44738 * 181.25365 * 12 11 10 15 15 N 1.46494 * 109.47183 * 64.93798 * 14 12 11 16 16 C 1.36936 * 120.00149 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99852 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99913 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00068 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47239 * 89.99322 * 20 18 16 22 22 H 1.48497 * 109.47433 * 209.99688 * 20 18 16 23 23 H 1.48502 * 109.46983 * 329.99550 * 20 18 16 24 24 C 1.53041 * 109.53863 * 61.24183 * 12 11 10 25 25 H 1.09003 * 109.50201 * 58.58509 * 24 12 11 26 26 C 1.53005 * 109.50074 * 178.67975 * 24 12 11 27 27 C 1.46926 * 120.62989 * 184.06609 * 9 7 6 28 28 N 1.34399 * 108.45642 * 0.23162 * 6 5 4 29 29 N 1.28759 * 109.52555 * 0.02562 * 28 6 5 30 30 H 1.08997 * 109.47289 * 299.99780 * 1 2 3 31 31 H 1.09003 * 109.47564 * 60.00101 * 1 2 3 32 32 H 1.09001 * 109.47499 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46516 * 240.00008 * 2 1 3 34 34 H 1.09007 * 109.46637 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47370 * 299.99892 * 3 2 1 36 36 H 1.09003 * 109.46846 * 60.00469 * 3 2 1 37 37 H 1.08002 * 126.58452 * 0.02562 * 5 4 2 38 38 H 1.09005 * 109.58383 * 353.41614 * 10 9 7 39 39 H 1.09001 * 109.58560 * 113.83980 * 10 9 7 40 40 H 1.08993 * 109.56201 * 185.54958 * 11 10 9 41 41 H 1.08998 * 109.38652 * 65.50946 * 11 10 9 42 42 H 1.08998 * 109.47175 * 184.94363 * 14 12 11 43 43 H 1.09000 * 109.46880 * 304.94235 * 14 12 11 44 44 H 0.97002 * 119.99673 * 0.02562 * 15 14 12 45 45 H 0.97009 * 120.00093 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.47176 * 179.83546 * 26 24 12 47 47 H 1.08997 * 109.46590 * 299.84360 * 26 24 12 48 48 H 1.09002 * 109.46280 * 59.83592 * 26 24 12 49 49 H 1.09001 * 109.59122 * 246.15409 * 27 9 7 50 50 H 1.08996 * 109.58914 * 6.58490 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1972 -0.1516 2.4187 6 6 2.6586 -1.1505 3.2281 7 6 2.9883 -1.0174 4.6598 8 8 2.9732 0.0777 5.1879 9 7 3.3062 -2.1097 5.3824 10 6 3.4096 -3.4276 4.7412 11 6 2.5165 -4.4161 5.4887 12 6 2.8836 -4.4092 6.9744 13 1 3.9331 -4.6793 7.0904 14 6 2.0112 -5.4215 7.7195 15 7 2.3213 -6.7735 7.2484 16 6 1.6600 -7.8506 7.7752 17 1 0.9100 -7.7034 8.5383 18 6 1.9542 -9.1318 7.3292 19 7 2.8686 -9.3112 6.3996 20 14 1.0516 -10.6011 8.0472 21 1 -0.1699 -10.8711 7.2470 22 1 1.9384 -11.7917 8.0138 23 1 0.6684 -10.3086 9.4518 24 6 2.6500 -3.0116 7.5528 25 1 1.6059 -2.7306 7.4149 26 6 2.9859 -3.0139 9.0455 27 6 3.5501 -2.0062 6.8276 28 7 2.7608 -2.2754 2.4996 29 7 2.3926 -2.0388 1.2887 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 2.0077 0.8725 2.7046 38 1 3.0839 -3.3556 3.7034 39 1 4.4430 -3.7723 4.7789 40 1 2.6608 -5.4174 5.0830 41 1 1.4735 -4.1225 5.3703 42 1 2.2101 -5.3548 8.7891 43 1 0.9600 -5.2033 7.5311 44 1 2.9952 -6.9057 6.5633 45 1 3.0740 -10.2065 6.0876 46 1 2.8222 -2.0177 9.4563 47 1 2.3453 -3.7294 9.5609 48 1 4.0298 -3.2964 9.1824 49 1 4.5951 -2.2327 7.0391 50 1 3.3171 -0.9967 7.1662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185380681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:25 Heat of formation + Delta-G solvation = 53.359523 kcal Electronic energy + Delta-G solvation = -29505.438871 eV Core-core repulsion = 25569.424825 eV Total energy + Delta-G solvation = -3936.014046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.39376 -41.13758 -39.16261 -37.49121 -36.55160 -35.00862 -33.48555 -32.55137 -32.01555 -31.87986 -28.43547 -28.29353 -27.86692 -25.73546 -25.10382 -24.50688 -23.34518 -22.65927 -21.81630 -21.28249 -20.44994 -19.12793 -18.47848 -17.54011 -17.17289 -17.03298 -16.69184 -16.19613 -15.92292 -15.75189 -15.52514 -15.46126 -15.19832 -15.11330 -14.49812 -14.39452 -14.21698 -14.07010 -13.92624 -13.57879 -13.21955 -13.17810 -13.09815 -12.96505 -12.89953 -12.81973 -12.70872 -12.54977 -12.23753 -12.15740 -12.06538 -11.90610 -11.87096 -11.62359 -11.40118 -11.35419 -11.16563 -10.95637 -10.64800 -10.41255 -9.64135 -8.95452 -7.93082 -5.21201 0.12650 0.53910 1.04891 1.46775 1.48823 1.57220 1.90410 2.17106 2.57009 3.04093 3.29792 3.39911 3.58086 3.71179 3.79353 3.81353 3.88501 3.91389 4.00386 4.06256 4.20170 4.23486 4.28789 4.36503 4.55061 4.60528 4.62089 4.64171 4.66526 4.71674 4.77281 4.79412 4.83916 4.88065 5.00994 5.10064 5.13770 5.15320 5.19215 5.21730 5.27577 5.33817 5.42833 5.48164 5.50137 5.56437 5.68124 6.28429 6.29612 6.80548 7.06608 7.35465 8.12675 8.36534 9.30525 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.002624 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.430103 B =10666.928028 C =12155.261373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 C -0.164 4.164 4 N -0.339 5.339 5 C 0.112 3.888 6 C -0.122 4.122 7 C 0.602 3.398 8 O -0.567 6.567 9 N -0.592 5.592 10 C 0.076 3.924 11 C -0.112 4.112 12 C -0.080 4.080 13 H 0.067 0.933 14 C 0.158 3.842 15 N -0.743 5.743 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.973 3.027 21 H -0.288 1.288 22 H -0.294 1.294 23 H -0.270 1.270 24 C -0.087 4.087 25 H 0.066 0.934 26 C -0.142 4.142 27 C 0.120 3.880 28 N -0.226 5.226 29 N -0.091 5.091 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.234 0.766 38 H 0.142 0.858 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.030 0.970 43 H 0.009 0.991 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.080 0.920 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 27.715 -12.773 30.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 C -0.222 4.222 4 N -0.125 5.125 5 C -0.046 4.046 6 C -0.262 4.262 7 C 0.390 3.610 8 O -0.447 6.447 9 N -0.322 5.322 10 C -0.047 4.047 11 C -0.151 4.151 12 C -0.099 4.099 13 H 0.085 0.915 14 C 0.031 3.969 15 N -0.386 5.386 16 C -0.376 4.376 17 H 0.091 0.909 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.802 3.198 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.195 1.195 24 C -0.106 4.106 25 H 0.085 0.915 26 C -0.200 4.200 27 C -0.002 4.002 28 N -0.098 5.098 29 N -0.070 5.070 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.069 0.931 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.097 0.903 37 H 0.250 0.750 38 H 0.158 0.842 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.027 0.973 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.098 0.902 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.888 26.905 -13.213 30.034 hybrid contribution -0.291 -0.756 0.539 0.973 sum -2.179 26.149 -12.674 29.140 Atomic orbital electron populations 1.22271 0.91481 1.03134 1.05260 1.22149 0.96413 0.94504 0.83609 1.22300 1.02278 0.91590 1.06047 1.51115 1.42553 1.08680 1.10129 1.23643 0.95488 1.01489 0.83947 1.21487 1.16517 0.91421 0.96738 1.16992 0.76242 0.83818 0.83971 1.90743 1.55862 1.26151 1.71917 1.47986 1.67000 1.07957 1.09264 1.22735 1.00189 0.80665 1.01097 1.21657 0.99130 0.98939 0.95344 1.21254 0.99586 0.94485 0.94534 0.91472 1.20886 0.95791 0.83880 0.96302 1.42582 1.46882 1.01577 1.47514 1.19621 1.15056 0.86820 1.16075 0.90926 1.25555 1.00797 1.00188 1.00309 1.69820 1.36777 1.21382 1.33975 0.85150 0.77406 0.79047 0.78227 1.21529 1.22069 1.19457 1.21361 0.99783 0.93252 0.96248 0.91529 1.21794 1.02158 1.02608 0.93431 1.21793 0.99741 1.00648 0.78015 1.74092 1.13238 1.23268 0.99177 1.81979 1.18721 0.93926 1.12347 0.91320 0.86897 0.93118 0.86108 0.91718 0.86771 0.90254 0.74971 0.84173 0.91373 0.92197 0.93154 0.95237 0.97333 0.79332 0.94026 0.90732 0.92491 0.92048 0.90205 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.52 71.98 0.69 -0.27 16 2 C 0.13 0.99 3.96 44.99 0.18 1.17 16 3 C -0.16 -0.36 8.85 71.98 0.64 0.27 16 4 N -0.34 -5.60 3.54 -326.54 -1.16 -6.76 16 5 C 0.11 1.96 10.41 83.85 0.87 2.83 16 6 C -0.12 -3.11 6.77 40.82 0.28 -2.83 16 7 C 0.60 17.27 7.69 86.69 0.67 17.94 16 8 O -0.57 -17.54 16.30 -4.00 -0.07 -17.61 16 9 N -0.59 -16.93 2.98 -823.49 -2.45 -19.38 16 10 C 0.08 2.32 6.28 86.22 0.54 2.86 16 11 C -0.11 -3.91 5.23 30.53 0.16 -3.75 16 12 C -0.08 -2.70 1.73 -10.77 -0.02 -2.72 16 13 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.16 6.59 5.41 86.38 0.47 7.06 16 15 N -0.74 -39.15 5.32 -343.46 -1.83 -40.97 16 16 C -0.24 -14.08 9.99 84.03 0.84 -13.24 16 17 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 19 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 20 Si 0.97 47.37 29.55 68.60 2.03 49.39 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 C -0.09 -2.37 2.41 -10.71 -0.03 -2.40 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 26 C -0.14 -3.40 8.82 71.98 0.63 -2.76 16 27 C 0.12 3.09 5.71 86.36 0.49 3.58 16 28 N -0.23 -6.39 8.64 -50.00 -0.43 -6.82 16 29 N -0.09 -2.30 13.79 37.02 0.51 -1.79 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 35 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.08 0.08 7.23 -2.39 -0.02 0.07 16 37 H 0.23 2.32 7.34 -2.91 -0.02 2.30 16 38 H 0.14 4.40 3.62 -103.05 -0.37 4.03 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 2.42 7.15 -2.39 -0.02 2.40 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.03 1.22 6.14 -2.39 -0.01 1.20 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.37 20.88 6.84 -92.71 -0.63 20.25 16 45 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.06 1.49 6.30 -2.39 -0.02 1.48 16 48 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.10 2.41 7.03 -2.39 -0.02 2.39 16 Total: -1.00 -75.46 394.55 3.71 -71.75 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -0.05 Total: 28.94 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 6.87 Total: 3.69 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -5.07 Total: -136.17 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.07 Total: -17.61 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -75.46 3.71 -71.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185380681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.112 kcal (2) G-P(sol) polarization free energy of solvation -75.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds