Wall clock time and date at job start Wed Apr 1 2020 00:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.49942 * 2 1 4 4 C 1.52757 * 109.38903 * 120.08658 * 2 1 3 5 5 N 1.46923 * 109.00936 * 65.51300 * 4 2 1 6 6 C 1.34781 * 120.62997 * 233.58493 * 5 4 2 7 7 O 1.21286 * 119.99906 * 359.71976 * 6 5 4 8 8 C 1.50699 * 119.99966 * 179.72073 * 6 5 4 9 9 C 1.52998 * 109.46844 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46999 * 179.97438 * 9 8 6 11 11 N 1.46495 * 109.47179 * 180.02562 * 10 9 8 12 12 C 1.34428 * 126.82196 * 125.00293 * 11 10 9 13 13 N 1.30834 * 108.08033 * 180.02562 * 12 11 10 14 14 C 1.33241 * 109.82716 * 0.02562 * 13 12 11 15 15 N 1.30718 * 108.94820 * 359.97438 * 14 13 12 16 16 C 1.46928 * 118.74015 * 53.31242 * 5 4 2 17 17 C 1.53189 * 108.77185 * 306.64273 * 16 5 4 18 18 C 1.53041 * 109.31396 * 54.63671 * 17 16 5 19 19 H 1.09002 * 109.46391 * 58.65200 * 18 17 16 20 20 C 1.53002 * 109.46229 * 178.62702 * 18 17 16 21 21 N 1.46505 * 109.46758 * 295.00318 * 20 18 17 22 22 C 1.36936 * 119.99584 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00498 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99912 * 179.97438 * 22 21 20 25 25 N 1.31623 * 119.99800 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00375 * 179.97438 * 24 22 21 27 27 H 1.48490 * 109.46972 * 90.00265 * 26 24 22 28 28 H 1.48494 * 109.47248 * 210.00759 * 26 24 22 29 29 H 1.48507 * 109.46696 * 330.00636 * 26 24 22 30 30 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46898 * 300.05842 * 1 2 3 32 32 H 1.09001 * 109.47350 * 60.05806 * 1 2 3 33 33 H 1.08998 * 109.50681 * 305.63036 * 4 2 1 34 34 H 1.09005 * 109.43203 * 185.35020 * 4 2 1 35 35 H 1.09004 * 109.46813 * 60.00131 * 8 6 5 36 36 H 1.09000 * 109.47126 * 299.99980 * 8 6 5 37 37 H 1.09004 * 109.47258 * 60.00465 * 9 8 6 38 38 H 1.09000 * 109.47293 * 299.99940 * 9 8 6 39 39 H 1.09004 * 109.46516 * 60.00279 * 10 9 8 40 40 H 1.09000 * 109.47268 * 300.00224 * 10 9 8 41 41 H 1.08001 * 125.96487 * 0.02562 * 12 11 10 42 42 H 1.08002 * 125.52885 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.58351 * 66.42804 * 16 5 4 44 44 H 1.08991 * 109.58668 * 186.71179 * 16 5 4 45 45 H 1.09003 * 109.49494 * 174.58179 * 17 16 5 46 46 H 1.08996 * 109.49764 * 294.64916 * 17 16 5 47 47 H 1.09006 * 109.46965 * 54.99324 * 20 18 17 48 48 H 1.08991 * 109.47447 * 174.99977 * 20 18 17 49 49 H 0.96998 * 120.00304 * 359.97438 * 21 20 18 50 50 H 0.96999 * 120.00306 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0371 -0.7224 1.2468 5 7 1.6528 -2.1383 1.1691 6 6 0.9758 -2.7225 2.1775 7 8 0.6825 -2.0798 3.1634 8 6 0.5834 -4.1742 2.0801 9 6 -0.1686 -4.5853 3.3475 10 6 -0.5677 -6.0590 3.2484 11 7 -1.2883 -6.4525 4.4617 12 6 -2.5101 -7.0092 4.5283 13 7 -2.7972 -7.2085 5.7891 14 6 -1.7881 -6.7932 6.5536 15 7 -0.8403 -6.3222 5.7864 16 6 2.0153 -2.9038 -0.0315 17 6 1.5036 -2.1556 -1.2664 18 6 2.0408 -0.7226 -1.2487 19 1 3.1305 -0.7434 -1.2359 20 6 1.5597 0.0177 -2.4983 21 7 2.1467 -0.6018 -3.6891 22 6 1.8570 -0.1057 -4.9321 23 1 1.1956 0.7419 -5.0347 24 6 2.4136 -0.6923 -6.0605 25 7 3.2193 -1.7256 -5.9355 26 14 2.0180 -0.0162 -7.7563 27 1 3.0091 1.0296 -8.1157 28 1 2.0747 -1.1154 -8.7531 29 1 0.6557 0.5749 -7.7480 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 1.5933 -0.2715 2.1344 34 1 3.1229 -0.6406 1.2968 35 1 1.4791 -4.7864 1.9748 36 1 -0.0600 -4.3192 1.2123 37 1 -1.0643 -3.9731 3.4533 38 1 0.4751 -4.4404 4.2151 39 1 0.3278 -6.6715 3.1424 40 1 -1.2116 -6.2036 2.3808 41 1 -3.1441 -7.2499 3.6878 42 1 -1.7577 -6.8391 7.6322 43 1 3.0993 -3.0035 -0.0878 44 1 1.5593 -3.8927 0.0142 45 1 1.8487 -2.6623 -2.1677 46 1 0.4139 -2.1363 -1.2545 47 1 0.4727 -0.0385 -2.5579 48 1 1.8671 1.0619 -2.4429 49 1 2.7404 -1.3633 -3.5970 50 1 3.6079 -2.1358 -6.7239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185460282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:44 Heat of formation + Delta-G solvation = 55.068523 kcal Electronic energy + Delta-G solvation = -28763.449295 eV Core-core repulsion = 24827.509357 eV Total energy + Delta-G solvation = -3935.939938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 14.30 seconds Orbital eigenvalues (eV) -42.36048 -40.54890 -38.31399 -35.92496 -35.00756 -33.55085 -32.51079 -31.73244 -31.51426 -30.37161 -28.18570 -27.08088 -26.27641 -23.88714 -23.30413 -23.01388 -22.32952 -21.63226 -21.26511 -19.80533 -18.39561 -17.82973 -17.29386 -16.85671 -16.53276 -15.89168 -15.75830 -15.20977 -15.05621 -14.97296 -14.48577 -14.38171 -14.05834 -13.87563 -13.64824 -13.60515 -13.18197 -12.96543 -12.75978 -12.59485 -12.51147 -12.26022 -12.11754 -11.97654 -11.61636 -11.38140 -11.27527 -11.08781 -10.97284 -10.80880 -10.40967 -10.35837 -10.28800 -10.22378 -10.13070 -10.04588 -10.02117 -9.79319 -9.67896 -8.90301 -8.64195 -6.95156 -5.81343 -3.09184 1.29859 1.93286 2.50431 2.64949 2.89116 3.40011 3.45634 3.46754 3.95144 3.98737 4.20776 4.40283 4.54790 4.59288 4.65161 4.71487 4.76889 4.87233 4.93026 4.96529 5.02698 5.09217 5.12227 5.21299 5.41543 5.49789 5.56733 5.58861 5.68654 5.74939 5.80486 5.81799 5.86192 5.89540 5.99776 6.04109 6.09648 6.16603 6.24122 6.32811 6.40967 6.43297 6.44643 6.61551 6.77020 6.89333 7.31983 7.66329 7.74254 8.05879 8.38199 9.49434 10.07511 10.42094 11.41596 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019246 B = 0.001945 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.480871 B =14392.613375 C =15208.116351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.515 3.485 7 O -0.547 6.547 8 C -0.139 4.139 9 C -0.114 4.114 10 C 0.127 3.873 11 N -0.377 5.377 12 C 0.253 3.747 13 N -0.550 5.550 14 C 0.195 3.805 15 N -0.315 5.315 16 C 0.104 3.896 17 C -0.128 4.128 18 C -0.088 4.088 19 H 0.071 0.929 20 C 0.158 3.842 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.219 0.781 42 H 0.216 0.784 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.021 0.979 48 H 0.017 0.983 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 -9.505 19.529 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.006 4.006 5 N -0.338 5.338 6 C 0.303 3.697 7 O -0.424 6.424 8 C -0.180 4.180 9 C -0.153 4.153 10 C 0.006 3.994 11 N -0.167 5.167 12 C -0.044 4.044 13 N -0.277 5.277 14 C -0.108 4.108 15 N -0.142 5.142 16 C -0.018 4.018 17 C -0.166 4.166 18 C -0.107 4.107 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.235 0.765 42 H 0.232 0.768 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.039 0.961 48 H 0.035 0.965 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.572 -8.901 20.230 23.058 hybrid contribution 0.052 0.104 -1.456 1.460 sum -6.520 -8.797 18.774 21.734 Atomic orbital electron populations 1.21853 0.94950 1.01832 1.01464 1.21400 0.96652 0.99543 0.94254 0.90036 1.21582 0.99454 0.80316 0.99206 1.48125 1.55852 1.11601 1.18210 1.20460 0.77434 0.89283 0.82483 1.90702 1.55029 1.65532 1.31182 1.21612 1.02364 0.94261 0.99745 1.21575 1.02072 0.93112 0.98538 1.21925 0.97865 0.97334 0.82324 1.50574 1.14261 1.45566 1.06346 1.26109 0.86680 0.94419 0.97217 1.70542 1.29729 1.26516 1.00935 1.26031 0.87334 0.96115 1.01329 1.78079 1.23915 1.25028 0.87213 1.21896 1.00673 0.94856 0.84391 1.21969 1.01335 0.96116 0.97156 1.21302 1.00268 0.94649 0.94521 0.91039 1.20716 0.95899 0.94681 0.85652 1.42375 1.56741 1.37649 1.00841 1.19229 1.22937 1.10882 0.83852 0.91294 1.24722 1.00097 0.98401 0.97812 1.69647 1.35686 1.24446 1.28554 0.86200 0.77815 0.77807 0.84444 1.21750 1.21785 1.20812 0.92722 0.93379 0.91961 0.89244 0.91622 0.88410 0.88354 0.90506 0.89548 0.88996 0.87755 0.76494 0.76754 0.91055 0.89982 0.89363 0.91372 0.96090 0.96504 0.78330 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.38 37.16 0.31 -1.48 16 2 C -0.10 -1.22 2.71 -90.72 -0.25 -1.46 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.36 5.79 -3.94 -0.02 1.34 16 5 N -0.60 -6.63 2.42 -173.04 -0.42 -7.05 16 6 C 0.52 5.86 7.70 -10.98 -0.08 5.77 16 7 O -0.55 -8.29 15.40 5.55 0.09 -8.21 16 8 C -0.14 -0.98 4.05 -27.88 -0.11 -1.09 16 9 C -0.11 -0.89 4.71 -26.73 -0.13 -1.01 16 10 C 0.13 0.67 6.55 -4.04 -0.03 0.64 16 11 N -0.38 -3.07 3.69 -62.63 -0.23 -3.30 16 12 C 0.25 1.84 12.63 -90.65 -1.14 0.69 16 13 N -0.55 -5.38 11.19 -15.83 -0.18 -5.56 16 14 C 0.19 1.82 13.03 -91.81 -1.20 0.62 16 15 N -0.31 -3.33 12.57 29.29 0.37 -2.96 16 16 C 0.10 1.03 6.35 -3.71 -0.02 1.01 16 17 C -0.13 -1.65 4.90 -26.61 -0.13 -1.79 16 18 C -0.09 -1.28 1.96 -90.57 -0.18 -1.45 16 19 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 20 C 0.16 2.97 5.18 -4.04 -0.02 2.95 16 21 N -0.73 -17.52 5.32 -59.90 -0.32 -17.84 16 22 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 26 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 30 H 0.05 0.69 5.97 -51.93 -0.31 0.38 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.82 6.58 -51.93 -0.34 0.47 16 33 H 0.09 1.13 7.01 -51.93 -0.36 0.77 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.51 7.94 -51.93 -0.41 0.10 16 36 H 0.10 0.52 7.70 -51.93 -0.40 0.12 16 37 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.23 8.09 -51.93 -0.42 -0.19 16 41 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.22 1.27 8.06 -52.49 -0.42 0.84 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 45 H 0.09 1.34 7.15 -51.93 -0.37 0.97 16 46 H 0.07 0.90 6.34 -51.93 -0.33 0.57 16 47 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.38 9.50 6.85 -40.82 -0.28 9.23 16 50 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -35.54 395.68 -10.35 -45.90 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.08 Total: 5.09 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.25 Total: -2.37 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -0.05 Total: -63.29 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.54 -10.35 -45.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185460282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.965 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.30 seconds