Wall clock time and date at job start Wed Apr 1 2020 00:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.52000 * 2 1 4 4 C 1.52759 * 109.56297 * 240.04430 * 2 1 3 5 5 N 1.46927 * 109.00595 * 185.55161 * 4 2 1 6 6 C 1.34777 * 120.63015 * 233.58588 * 5 4 2 7 7 O 1.21279 * 120.00166 * 359.71861 * 6 5 4 8 8 C 1.50706 * 119.99762 * 179.72067 * 6 5 4 9 9 C 1.53002 * 109.46925 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47340 * 180.02562 * 9 8 6 11 11 N 1.46500 * 109.47364 * 179.97438 * 10 9 8 12 12 C 1.34430 * 126.81987 * 124.70593 * 11 10 9 13 13 N 1.30841 * 108.07147 * 179.89534 * 12 11 10 14 14 C 1.33236 * 109.82955 * 0.38445 * 13 12 11 15 15 N 1.30713 * 108.94988 * 359.76049 * 14 13 12 16 16 C 1.46925 * 118.73993 * 53.30921 * 5 4 2 17 17 C 1.53200 * 108.77464 * 306.64384 * 16 5 4 18 18 C 1.53039 * 109.31274 * 54.63376 * 17 16 5 19 19 H 1.09004 * 109.45855 * 58.64023 * 18 17 16 20 20 C 1.52997 * 109.45890 * 178.61492 * 18 17 16 21 21 N 1.46504 * 109.47076 * 294.99839 * 20 18 17 22 22 C 1.36934 * 119.99692 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00672 * 0.02562 * 22 21 20 24 24 C 1.38820 * 119.99935 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99436 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00129 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47403 * 59.99474 * 26 24 22 28 28 H 1.48502 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46633 * 299.99744 * 26 24 22 30 30 H 1.09004 * 109.46856 * 299.92069 * 1 2 3 31 31 H 1.08999 * 109.47095 * 59.92012 * 1 2 3 32 32 H 1.08992 * 109.46742 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.51129 * 65.67460 * 4 2 1 34 34 H 1.08995 * 109.43173 * 305.38264 * 4 2 1 35 35 H 1.09000 * 109.47318 * 299.99141 * 8 6 5 36 36 H 1.09000 * 109.47161 * 59.99772 * 8 6 5 37 37 H 1.09004 * 109.46930 * 299.99901 * 9 8 6 38 38 H 1.09004 * 109.47059 * 59.99503 * 9 8 6 39 39 H 1.09004 * 109.46785 * 299.99692 * 10 9 8 40 40 H 1.09000 * 109.47196 * 59.99588 * 10 9 8 41 41 H 1.07998 * 125.96480 * 0.03433 * 12 11 10 42 42 H 1.08004 * 125.52631 * 179.80601 * 14 13 12 43 43 H 1.08998 * 109.59059 * 66.42670 * 16 5 4 44 44 H 1.09005 * 109.59079 * 186.85908 * 16 5 4 45 45 H 1.09003 * 109.49760 * 174.58671 * 17 16 5 46 46 H 1.09000 * 109.49558 * 294.64621 * 17 16 5 47 47 H 1.08997 * 109.47211 * 54.99660 * 20 18 17 48 48 H 1.08998 * 109.47126 * 175.00042 * 20 18 17 49 49 H 0.96996 * 120.00059 * 0.02562 * 21 20 18 50 50 H 0.97007 * 119.99893 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7187 -1.2471 5 7 3.5046 -0.8291 -1.1695 6 6 4.2812 -0.3856 -2.1779 7 8 3.7732 0.1057 -3.1635 8 6 5.7807 -0.5002 -2.0806 9 6 6.4192 0.0719 -3.3478 10 6 7.9415 -0.0449 -3.2494 11 7 8.5528 0.5023 -4.4631 12 6 9.4821 1.4714 -4.5306 13 7 9.7689 1.6716 -5.7914 14 6 9.0403 0.8587 -6.5553 15 7 8.2799 0.1231 -5.7876 16 6 4.1053 -1.4266 0.0308 17 6 3.5709 -0.6949 1.2661 18 6 2.0408 -0.7230 1.2484 19 1 1.6968 -1.7572 1.2352 20 6 1.5037 -0.0230 2.4984 21 7 1.8918 -0.7838 3.6888 22 6 1.5209 -0.3458 4.9321 23 1 0.9421 0.5601 5.0352 24 6 1.8890 -1.0664 6.0602 25 7 2.5949 -2.1701 5.9345 26 14 1.3826 -0.4694 7.7562 27 1 -0.0989 -0.4079 7.8374 28 1 1.8968 -1.4083 8.7854 29 1 1.9479 0.8831 7.9940 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3632 -1.0276 -0.0005 33 1 1.7647 -0.1497 -2.1346 34 1 1.6022 -1.7149 -1.2974 35 1 6.1322 0.0577 -1.2126 36 1 6.0589 -1.5488 -1.9755 37 1 6.0676 -0.4863 -4.2156 38 1 6.1409 1.1206 -3.4533 39 1 8.2933 0.5130 -2.3816 40 1 8.2193 -1.0937 -3.1442 41 1 9.9176 1.9921 -3.6906 42 1 9.0732 0.8142 -7.6339 43 1 3.8376 -2.4817 0.0870 44 1 5.1897 -1.3245 -0.0136 45 1 3.9335 -1.1895 2.1672 46 1 3.9164 0.3388 1.2544 47 1 1.9194 0.9827 2.5586 48 1 0.4168 0.0357 2.4432 49 1 2.4120 -1.5972 3.5963 50 1 2.8524 -2.6734 6.7228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185460283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:24 Heat of formation + Delta-G solvation = 52.217555 kcal Electronic energy + Delta-G solvation = -28529.480525 eV Core-core repulsion = 24593.416960 eV Total energy + Delta-G solvation = -3936.063565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.36036 -40.44620 -38.24526 -35.92883 -35.04886 -33.71304 -32.51237 -31.96175 -31.51752 -30.36055 -28.25641 -26.94821 -26.21621 -23.94008 -23.21236 -22.53665 -22.32488 -21.56635 -21.25652 -19.92117 -19.05830 -17.77746 -17.27572 -16.90299 -16.52864 -15.98298 -15.80847 -15.25491 -14.92365 -14.79271 -14.48169 -14.38077 -14.00557 -13.95048 -13.55040 -13.48183 -13.16365 -13.04365 -12.81532 -12.55476 -12.50196 -12.18537 -12.00276 -11.93124 -11.80889 -11.62988 -11.27230 -11.03522 -10.92752 -10.84212 -10.44823 -10.37665 -10.32893 -10.23062 -10.13104 -10.05408 -10.02804 -9.81969 -9.66937 -8.89792 -8.65954 -6.94845 -5.81060 -3.08871 1.29856 1.93304 2.48857 2.64988 2.87458 3.40674 3.45421 3.46088 3.95035 3.98791 4.20400 4.40065 4.54788 4.59354 4.65261 4.71026 4.77227 4.88038 4.90161 4.93507 5.02389 5.06124 5.11966 5.27125 5.41421 5.47781 5.53508 5.57554 5.66071 5.74995 5.81620 5.83704 5.86902 5.89624 5.93754 6.02927 6.09683 6.18782 6.23560 6.28635 6.40129 6.43707 6.46085 6.57973 6.79197 6.88622 7.30418 7.65973 7.74292 8.04186 8.38473 9.49621 10.07694 10.42348 11.41822 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.001941 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.453423 B =14418.844109 C =15548.266324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.071 0.929 4 C 0.117 3.883 5 N -0.608 5.608 6 C 0.515 3.485 7 O -0.547 6.547 8 C -0.139 4.139 9 C -0.115 4.115 10 C 0.127 3.873 11 N -0.377 5.377 12 C 0.253 3.747 13 N -0.550 5.550 14 C 0.195 3.805 15 N -0.315 5.315 16 C 0.104 3.896 17 C -0.126 4.126 18 C -0.089 4.089 19 H 0.072 0.928 20 C 0.156 3.844 21 N -0.731 5.731 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.219 0.781 42 H 0.216 0.784 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.016 0.984 48 H 0.024 0.976 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.609 2.798 -19.476 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.341 5.341 6 C 0.303 3.697 7 O -0.425 6.425 8 C -0.179 4.179 9 C -0.153 4.153 10 C 0.006 3.994 11 N -0.168 5.168 12 C -0.044 4.044 13 N -0.277 5.277 14 C -0.108 4.108 15 N -0.142 5.142 16 C -0.018 4.018 17 C -0.164 4.164 18 C -0.108 4.108 19 H 0.090 0.910 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.235 0.765 42 H 0.232 0.768 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.034 0.966 48 H 0.042 0.958 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.980 2.794 -20.176 22.682 hybrid contribution -0.068 0.035 1.453 1.455 sum 9.911 2.828 -18.723 21.373 Atomic orbital electron populations 1.21832 0.94361 1.02213 1.02077 1.21377 0.96169 0.99910 0.94219 0.91010 1.21607 0.78819 1.00900 0.99173 1.48175 1.07138 1.60466 1.18309 1.20488 0.89225 0.77515 0.82451 1.90700 1.75610 1.44981 1.31196 1.21612 0.92707 1.03847 0.99781 1.21580 0.91648 1.03573 0.98536 1.21924 0.94381 1.00813 0.82324 1.50577 1.30976 1.28849 1.06351 1.26113 0.90537 0.90560 0.97210 1.70542 1.28643 1.27582 1.00960 1.26029 0.91842 0.91604 1.01328 1.78076 1.24410 1.24545 0.87208 1.21912 0.97946 0.97639 0.84331 1.21939 0.96175 1.01080 0.97239 1.21336 0.94687 1.00207 0.94555 0.90962 1.20755 0.96716 0.94026 0.85631 1.42361 1.65463 1.28921 1.00830 1.19183 1.27741 1.06196 0.83855 0.91350 1.24719 1.00944 0.97528 0.97806 1.69637 1.42770 1.17260 1.28678 0.86276 0.78089 0.77639 0.84234 1.21296 1.21695 1.21325 0.91289 0.93001 0.92488 0.89305 0.91566 0.88301 0.88376 0.89545 0.90492 0.87734 0.88981 0.76488 0.76751 0.90995 0.89920 0.89207 0.91792 0.96613 0.95794 0.78338 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.82 37.16 0.33 -1.41 16 2 C -0.10 -1.22 2.40 -90.72 -0.22 -1.43 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.40 5.69 -3.93 -0.02 1.37 16 5 N -0.61 -6.85 2.98 -173.03 -0.52 -7.37 16 6 C 0.52 5.98 7.70 -10.98 -0.08 5.89 16 7 O -0.55 -8.43 15.40 5.56 0.09 -8.35 16 8 C -0.14 -0.99 4.05 -27.88 -0.11 -1.10 16 9 C -0.11 -0.90 4.71 -26.73 -0.13 -1.02 16 10 C 0.13 0.67 6.55 -4.04 -0.03 0.65 16 11 N -0.38 -3.08 3.69 -62.63 -0.23 -3.31 16 12 C 0.25 1.84 12.63 -90.65 -1.14 0.70 16 13 N -0.55 -5.39 11.19 -15.83 -0.18 -5.57 16 14 C 0.19 1.82 13.03 -91.82 -1.20 0.63 16 15 N -0.31 -3.33 12.57 29.29 0.37 -2.97 16 16 C 0.10 1.05 6.34 -3.71 -0.02 1.02 16 17 C -0.13 -1.66 5.25 -26.61 -0.14 -1.80 16 18 C -0.09 -1.30 1.73 -90.58 -0.16 -1.45 16 19 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 20 C 0.16 2.95 5.41 -4.04 -0.02 2.93 16 21 N -0.73 -17.52 5.32 -59.91 -0.32 -17.84 16 22 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 26 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H 0.07 0.88 6.29 -51.93 -0.33 0.56 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.52 7.69 -51.93 -0.40 0.12 16 36 H 0.10 0.52 7.94 -51.93 -0.41 0.10 16 37 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.10 0.23 8.09 -51.93 -0.42 -0.19 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.22 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 45 H 0.09 1.37 7.15 -51.93 -0.37 1.00 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 49 H 0.38 9.51 6.85 -40.82 -0.28 9.23 16 50 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -35.60 399.70 -10.49 -46.10 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.24 Total: 5.10 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.19 Total: -2.15 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.15 Total: -63.63 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.60 -10.49 -46.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185460283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.314 kcal (2) G-P(sol) polarization free energy of solvation -35.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds