Wall clock time and date at job start Wed Apr 1 2020 00:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.52000 * 2 1 4 4 C 1.52759 * 109.56297 * 240.04430 * 2 1 3 5 5 N 1.46927 * 109.00595 * 185.55161 * 4 2 1 6 6 C 1.34777 * 120.63015 * 233.58588 * 5 4 2 7 7 O 1.21279 * 120.00166 * 359.71861 * 6 5 4 8 8 C 1.50706 * 119.99762 * 179.72067 * 6 5 4 9 9 C 1.53002 * 109.46925 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47340 * 180.02562 * 9 8 6 11 11 N 1.46500 * 109.47364 * 179.97438 * 10 9 8 12 12 C 1.34430 * 126.81987 * 124.70593 * 11 10 9 13 13 N 1.30841 * 108.07147 * 179.89534 * 12 11 10 14 14 C 1.33236 * 109.82955 * 0.38445 * 13 12 11 15 15 N 1.30713 * 108.94988 * 359.76049 * 14 13 12 16 16 C 1.46925 * 118.73993 * 53.30921 * 5 4 2 17 17 C 1.53200 * 108.77464 * 306.64384 * 16 5 4 18 18 C 1.53039 * 109.31274 * 54.63376 * 17 16 5 19 19 H 1.09004 * 109.45855 * 58.64023 * 18 17 16 20 20 C 1.52997 * 109.45890 * 178.61492 * 18 17 16 21 21 N 1.46504 * 109.47076 * 294.99839 * 20 18 17 22 22 C 1.36934 * 119.99692 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00672 * 0.02562 * 22 21 20 24 24 C 1.38820 * 119.99935 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99436 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00129 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47403 * 59.99474 * 26 24 22 28 28 H 1.48502 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46633 * 299.99744 * 26 24 22 30 30 H 1.09004 * 109.46856 * 299.92069 * 1 2 3 31 31 H 1.08999 * 109.47095 * 59.92012 * 1 2 3 32 32 H 1.08992 * 109.46742 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.51129 * 65.67460 * 4 2 1 34 34 H 1.08995 * 109.43173 * 305.38264 * 4 2 1 35 35 H 1.09000 * 109.47318 * 299.99141 * 8 6 5 36 36 H 1.09000 * 109.47161 * 59.99772 * 8 6 5 37 37 H 1.09004 * 109.46930 * 299.99901 * 9 8 6 38 38 H 1.09004 * 109.47059 * 59.99503 * 9 8 6 39 39 H 1.09004 * 109.46785 * 299.99692 * 10 9 8 40 40 H 1.09000 * 109.47196 * 59.99588 * 10 9 8 41 41 H 1.07998 * 125.96480 * 0.03433 * 12 11 10 42 42 H 1.08004 * 125.52631 * 179.80601 * 14 13 12 43 43 H 1.08998 * 109.59059 * 66.42670 * 16 5 4 44 44 H 1.09005 * 109.59079 * 186.85908 * 16 5 4 45 45 H 1.09003 * 109.49760 * 174.58671 * 17 16 5 46 46 H 1.09000 * 109.49558 * 294.64621 * 17 16 5 47 47 H 1.08997 * 109.47211 * 54.99660 * 20 18 17 48 48 H 1.08998 * 109.47126 * 175.00042 * 20 18 17 49 49 H 0.96996 * 120.00059 * 0.02562 * 21 20 18 50 50 H 0.97007 * 119.99893 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7187 -1.2471 5 7 3.5046 -0.8291 -1.1695 6 6 4.2812 -0.3856 -2.1779 7 8 3.7732 0.1057 -3.1635 8 6 5.7807 -0.5002 -2.0806 9 6 6.4192 0.0719 -3.3478 10 6 7.9415 -0.0449 -3.2494 11 7 8.5528 0.5023 -4.4631 12 6 9.4821 1.4714 -4.5306 13 7 9.7689 1.6716 -5.7914 14 6 9.0403 0.8587 -6.5553 15 7 8.2799 0.1231 -5.7876 16 6 4.1053 -1.4266 0.0308 17 6 3.5709 -0.6949 1.2661 18 6 2.0408 -0.7230 1.2484 19 1 1.6968 -1.7572 1.2352 20 6 1.5037 -0.0230 2.4984 21 7 1.8918 -0.7838 3.6888 22 6 1.5209 -0.3458 4.9321 23 1 0.9421 0.5601 5.0352 24 6 1.8890 -1.0664 6.0602 25 7 2.5949 -2.1701 5.9345 26 14 1.3826 -0.4694 7.7562 27 1 -0.0989 -0.4079 7.8374 28 1 1.8968 -1.4083 8.7854 29 1 1.9479 0.8831 7.9940 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3632 -1.0276 -0.0005 33 1 1.7647 -0.1497 -2.1346 34 1 1.6022 -1.7149 -1.2974 35 1 6.1322 0.0577 -1.2126 36 1 6.0589 -1.5488 -1.9755 37 1 6.0676 -0.4863 -4.2156 38 1 6.1409 1.1206 -3.4533 39 1 8.2933 0.5130 -2.3816 40 1 8.2193 -1.0937 -3.1442 41 1 9.9176 1.9921 -3.6906 42 1 9.0732 0.8142 -7.6339 43 1 3.8376 -2.4817 0.0870 44 1 5.1897 -1.3245 -0.0136 45 1 3.9335 -1.1895 2.1672 46 1 3.9164 0.3388 1.2544 47 1 1.9194 0.9827 2.5586 48 1 0.4168 0.0357 2.4432 49 1 2.4120 -1.5972 3.5963 50 1 2.8524 -2.6734 6.7228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185460283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:11 Heat of formation + Delta-G solvation = 31.170622 kcal Electronic energy + Delta-G solvation = -28530.393189 eV Core-core repulsion = 24593.416960 eV Total energy + Delta-G solvation = -3936.976229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 23.22 seconds Orbital eigenvalues (eV) -42.94353 -41.39124 -39.32875 -36.63848 -36.42129 -35.02787 -33.56697 -32.97993 -32.13785 -31.97003 -29.00875 -28.31312 -27.09327 -25.51157 -24.15179 -23.56896 -22.88099 -22.67990 -22.04612 -21.02811 -19.95714 -19.13550 -18.40396 -17.81893 -17.16979 -16.90841 -16.67604 -16.49087 -15.93313 -15.71873 -15.56599 -15.39681 -15.22996 -15.02230 -14.84947 -14.43988 -14.18676 -14.01450 -13.84891 -13.74049 -13.33383 -13.11446 -12.99946 -12.93057 -12.80554 -12.68192 -12.57892 -12.55919 -12.21651 -11.94497 -11.87926 -11.83697 -11.62937 -11.44737 -11.17047 -10.99182 -10.90479 -10.79246 -10.76427 -10.57930 -9.63407 -8.94380 -7.93140 -5.20200 0.73170 1.46212 1.48756 1.50492 1.56697 1.62152 2.02266 2.04535 2.57538 3.38117 3.40199 3.56060 3.61050 3.69826 3.77794 3.85403 3.89806 4.04280 4.10715 4.14132 4.24221 4.26782 4.37385 4.41636 4.49508 4.53667 4.55712 4.64295 4.66240 4.67839 4.77850 4.81007 4.89742 4.99628 5.02437 5.11018 5.15104 5.19851 5.22051 5.32520 5.33106 5.36644 5.49424 5.49800 5.55826 5.62002 5.97496 6.29883 6.43100 7.14922 7.16246 7.36922 8.13446 8.38042 9.29766 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.001941 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.453423 B =14418.844109 C =15548.266324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.064 0.936 4 C 0.120 3.880 5 N -0.609 5.609 6 C 0.508 3.492 7 O -0.593 6.593 8 C -0.131 4.131 9 C -0.105 4.105 10 C 0.127 3.873 11 N -0.382 5.382 12 C 0.258 3.742 13 N -0.583 5.583 14 C 0.187 3.813 15 N -0.356 5.356 16 C 0.111 3.889 17 C -0.121 4.121 18 C -0.080 4.080 19 H 0.066 0.934 20 C 0.156 3.844 21 N -0.740 5.740 22 C -0.246 4.246 23 H 0.070 0.930 24 C -0.071 4.071 25 N -0.965 5.965 26 Si 0.968 3.032 27 H -0.281 1.281 28 H -0.294 1.294 29 H -0.280 1.280 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.146 0.854 40 H 0.106 0.894 41 H 0.262 0.738 42 H 0.235 0.765 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.011 0.989 48 H 0.022 0.978 49 H 0.376 0.624 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.889 3.003 -18.908 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.003 4.003 5 N -0.341 5.341 6 C 0.298 3.702 7 O -0.474 6.474 8 C -0.170 4.170 9 C -0.144 4.144 10 C 0.006 3.994 11 N -0.173 5.173 12 C -0.037 4.037 13 N -0.312 5.312 14 C -0.116 4.116 15 N -0.184 5.184 16 C -0.011 4.011 17 C -0.160 4.160 18 C -0.099 4.099 19 H 0.085 0.915 20 C 0.030 3.970 21 N -0.383 5.383 22 C -0.378 4.378 23 H 0.088 0.912 24 C -0.264 4.264 25 N -0.615 5.615 26 Si 0.798 3.202 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.206 1.206 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.164 0.836 40 H 0.124 0.876 41 H 0.277 0.723 42 H 0.251 0.749 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.029 0.971 48 H 0.040 0.960 49 H 0.209 0.791 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.245 3.010 -19.608 22.803 hybrid contribution -0.530 0.028 1.252 1.359 sum 10.715 3.038 -18.356 21.471 Atomic orbital electron populations 1.21810 0.93834 1.02486 1.02180 1.21252 0.96600 0.99215 0.93496 0.91733 1.21505 0.79798 1.00995 0.98030 1.48267 1.06821 1.60270 1.18694 1.21320 0.91085 0.76249 0.81530 1.90686 1.76777 1.46955 1.32964 1.21672 0.88987 1.06054 1.00330 1.21404 0.93755 1.01498 0.97710 1.22182 0.92203 1.02488 0.82517 1.50748 1.31270 1.29093 1.06161 1.26957 0.89504 0.89642 0.97639 1.70544 1.29773 1.28553 1.02288 1.26497 0.91407 0.91252 1.02399 1.78000 1.25673 1.25963 0.88753 1.21966 0.99857 0.97245 0.82037 1.21840 0.94856 1.01198 0.98070 1.21224 0.95944 0.99434 0.93270 0.91512 1.20881 0.96619 0.93636 0.85882 1.42515 1.65281 1.29066 1.01432 1.19547 1.26930 1.05977 0.85304 0.91238 1.25468 1.01695 0.98020 1.01215 1.69776 1.44196 1.18392 1.29177 0.85290 0.77798 0.77168 0.79967 1.20749 1.22050 1.20581 0.92523 0.91519 0.92147 0.90344 0.90765 0.85273 0.85534 0.92935 0.92806 0.83586 0.87595 0.72263 0.74910 0.90254 0.86248 0.91299 0.92009 0.97141 0.95994 0.79086 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.82 71.98 0.63 -2.69 16 2 C -0.09 -2.08 2.40 -10.86 -0.03 -2.11 16 3 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.12 2.72 5.69 86.22 0.49 3.21 16 5 N -0.61 -12.54 2.98 -819.72 -2.44 -14.98 16 6 C 0.51 10.97 7.70 87.66 0.67 11.64 16 7 O -0.59 -18.31 15.40 -3.03 -0.05 -18.36 16 8 C -0.13 -1.44 4.05 29.85 0.12 -1.32 16 9 C -0.10 -1.48 4.71 30.59 0.14 -1.34 16 10 C 0.13 0.95 6.55 86.38 0.57 1.52 16 11 N -0.38 -5.60 3.69 -352.05 -1.30 -6.90 16 12 C 0.26 3.22 12.63 180.36 2.28 5.50 16 13 N -0.58 -10.92 11.19 -204.00 -2.28 -13.20 16 14 C 0.19 3.49 13.03 180.77 2.36 5.84 16 15 N -0.36 -7.49 12.57 -61.25 -0.77 -8.26 16 16 C 0.11 1.91 6.34 86.37 0.55 2.45 16 17 C -0.12 -3.02 5.25 30.67 0.16 -2.85 16 18 C -0.08 -2.27 1.73 -10.77 -0.02 -2.29 16 19 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 20 C 0.16 5.89 5.41 86.38 0.47 6.35 16 21 N -0.74 -35.60 5.32 -343.45 -1.83 -37.42 16 22 C -0.25 -13.34 9.99 84.04 0.84 -12.50 16 23 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 24 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 25 N -0.96 -56.60 13.06 21.65 0.28 -56.32 16 26 Si 0.97 44.94 29.55 68.60 2.03 46.96 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 28 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 29 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 30 H 0.06 1.43 6.29 -2.39 -0.02 1.42 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.99 7.01 -2.39 -0.02 1.98 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.13 0.72 7.69 -2.39 -0.02 0.70 16 36 H 0.13 0.75 7.94 -2.39 -0.02 0.73 16 37 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 38 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 39 H 0.15 -0.10 8.09 -2.38 -0.02 -0.12 16 40 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.26 0.43 8.06 -2.91 -0.02 0.40 16 42 H 0.23 2.82 8.06 -2.91 -0.02 2.79 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.12 1.21 5.93 -2.38 -0.01 1.20 16 45 H 0.07 2.04 7.15 -2.39 -0.02 2.03 16 46 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 48 H 0.02 0.85 6.14 -2.39 -0.01 0.84 16 49 H 0.38 18.88 6.85 -92.71 -0.63 18.25 16 50 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -79.95 399.70 3.64 -76.30 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.30 Total: 24.27 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 9.70 Total: 7.91 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -8.34 Total: -137.09 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.05 Total: -18.36 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -79.95 3.64 -76.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185460283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.474 kcal (2) G-P(sol) polarization free energy of solvation -79.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.22 seconds