Wall clock time and date at job start Wed Apr 1 2020 00:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52045 * 2 1 4 4 C 1.53190 * 109.48631 * 239.91102 * 2 1 3 5 5 N 1.46929 * 108.76543 * 185.39521 * 4 2 1 6 6 C 1.34774 * 120.63389 * 233.59219 * 5 4 2 7 7 O 1.21276 * 119.99920 * 0.03114 * 6 5 4 8 8 C 1.50697 * 119.99902 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47240 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47506 * 180.02562 * 9 8 6 11 11 C 1.35345 * 126.75637 * 124.99897 * 10 9 8 12 12 N 1.35304 * 106.17955 * 180.02562 * 11 10 9 13 13 C 1.46502 * 125.87046 * 179.97438 * 12 11 10 14 14 N 1.28718 * 108.26448 * 359.97438 * 12 11 10 15 15 N 1.28635 * 110.17266 * 359.72821 * 14 12 11 16 16 C 1.46935 * 118.73495 * 53.61812 * 5 4 2 17 17 C 1.53193 * 108.77565 * 306.39194 * 16 5 4 18 18 C 1.53037 * 109.31342 * 54.63238 * 17 16 5 19 19 H 1.09002 * 109.46037 * 58.64662 * 18 17 16 20 20 C 1.53001 * 109.45929 * 178.61351 * 18 17 16 21 21 N 1.46490 * 109.47264 * 295.02805 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.08999 * 109.46815 * 299.92165 * 1 2 3 31 31 H 1.09001 * 109.47064 * 59.92014 * 1 2 3 32 32 H 1.08999 * 109.47057 * 179.91656 * 1 2 3 33 33 H 1.09006 * 109.58476 * 65.62224 * 4 2 1 34 34 H 1.08996 * 109.71467 * 305.25820 * 4 2 1 35 35 H 1.09006 * 109.47319 * 300.00573 * 8 6 5 36 36 H 1.09006 * 109.47139 * 60.00273 * 8 6 5 37 37 H 1.09006 * 109.47018 * 300.00250 * 9 8 6 38 38 H 1.08994 * 109.47630 * 59.99855 * 9 8 6 39 39 H 1.08007 * 126.91194 * 0.02882 * 11 10 9 40 40 H 1.09000 * 109.47106 * 90.00179 * 13 12 11 41 41 H 1.08998 * 109.47269 * 209.99725 * 13 12 11 42 42 H 1.08991 * 109.47273 * 329.99811 * 13 12 11 43 43 H 1.08995 * 109.58382 * 186.59914 * 16 5 4 44 44 H 1.09001 * 109.70241 * 66.24591 * 16 5 4 45 45 H 1.09005 * 109.49420 * 294.68481 * 17 16 5 46 46 H 1.08994 * 109.49677 * 174.58495 * 17 16 5 47 47 H 1.09003 * 109.46836 * 175.02512 * 20 18 17 48 48 H 1.08999 * 109.47071 * 55.03552 * 20 18 17 49 49 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 50 50 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0411 -0.7240 -1.2496 5 7 3.5044 -0.8290 -1.1698 6 6 4.2807 -0.3862 -2.1786 7 8 3.7725 0.1050 -3.1641 8 6 5.7802 -0.5015 -2.0820 9 6 6.4184 0.0709 -3.3492 10 6 7.9179 -0.0449 -3.2528 11 6 8.7427 -0.6450 -4.1425 12 7 9.9947 -0.5069 -3.6484 13 6 11.2235 -1.0030 -4.2729 14 7 9.9206 0.1352 -2.5353 15 7 8.6961 0.4305 -2.2742 16 6 4.1054 -1.4263 0.0307 17 6 3.5709 -0.6946 1.2659 18 6 2.0409 -0.7230 1.2484 19 1 1.6970 -1.7573 1.2353 20 6 1.5038 -0.0232 2.4984 21 7 1.8926 -0.7833 3.6887 22 6 1.5219 -0.3454 4.9321 23 1 0.9425 0.5601 5.0352 24 6 1.8907 -1.0655 6.0602 25 7 2.5972 -2.1689 5.9346 26 14 1.3844 -0.4684 7.7562 27 1 1.8995 -1.4068 8.7855 28 1 1.9491 0.8844 7.9936 29 1 -0.0971 -0.4079 7.8379 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7633 -0.1582 -2.1389 34 1 1.6053 -1.7218 -1.3004 35 1 6.1323 0.0565 -1.2143 36 1 6.0579 -1.5503 -1.9767 37 1 6.0663 -0.4867 -4.2171 38 1 6.1407 1.1196 -3.4541 39 1 8.4586 -1.1354 -5.0619 40 1 11.6300 -0.2373 -4.9337 41 1 11.9540 -1.2404 -3.4995 42 1 11.0011 -1.9003 -4.8502 43 1 5.1896 -1.3240 -0.0141 44 1 3.8400 -2.4820 0.0880 45 1 3.9157 0.3394 1.2538 46 1 3.9336 -1.1891 2.1669 47 1 0.4167 0.0350 2.4434 48 1 1.9188 0.9830 2.5581 49 1 2.4132 -1.5965 3.5963 50 1 2.8598 -2.4791 5.0538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185811381.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:53 Heat of formation + Delta-G solvation = 62.180556 kcal Electronic energy + Delta-G solvation = -28773.876712 eV Core-core repulsion = 24838.245175 eV Total energy + Delta-G solvation = -3935.631537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.57251 -40.34532 -38.15891 -35.51759 -35.11930 -33.95418 -33.54885 -32.03489 -30.57953 -30.13628 -28.36563 -27.05263 -26.69829 -24.76983 -23.42236 -22.57002 -22.43133 -21.56896 -21.17190 -19.84597 -18.89448 -17.71931 -17.27211 -17.00391 -16.89766 -15.95719 -15.89003 -15.18792 -14.96567 -14.56205 -14.41941 -14.16998 -13.93776 -13.79273 -13.68998 -13.56146 -13.18561 -13.03760 -12.95880 -12.76560 -12.46007 -12.36009 -11.93635 -11.87079 -11.79744 -11.61811 -11.55426 -10.97133 -10.90152 -10.71773 -10.66560 -10.41607 -10.40129 -10.26306 -10.12034 -9.91450 -9.77224 -9.44957 -9.13729 -8.83469 -8.59177 -6.95128 -6.07301 -3.06026 1.23587 1.98149 2.20953 2.58957 2.97680 3.53937 3.57589 3.74850 3.90473 4.15307 4.33585 4.43449 4.61136 4.67245 4.69670 4.73263 4.78053 4.91646 4.93745 4.97485 5.06396 5.10633 5.25754 5.30927 5.38269 5.49603 5.51059 5.63824 5.67894 5.71661 5.78159 5.81024 5.85155 5.88816 5.93337 5.95297 5.98879 6.17739 6.20428 6.25788 6.29488 6.44500 6.46784 6.58141 6.79622 6.89423 7.37954 7.84550 8.12481 8.19526 8.79153 9.27236 10.13446 10.28818 11.41421 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012854 B = 0.002248 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.758917 B =12453.111031 C =14245.480792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.608 5.608 6 C 0.517 3.483 7 O -0.550 6.550 8 C -0.134 4.134 9 C -0.015 4.015 10 C -0.017 4.017 11 C -0.050 4.050 12 N -0.297 5.297 13 C 0.081 3.919 14 N -0.086 5.086 15 N -0.262 5.262 16 C 0.105 3.895 17 C -0.126 4.126 18 C -0.090 4.090 19 H 0.070 0.930 20 C 0.162 3.838 21 N -0.743 5.743 22 C -0.328 4.328 23 H 0.063 0.937 24 C -0.047 4.047 25 N -0.945 5.945 26 Si 1.079 2.921 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.191 0.809 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.025 0.975 48 H 0.017 0.983 49 H 0.366 0.634 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.272 -0.362 -25.710 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.005 4.005 5 N -0.341 5.341 6 C 0.306 3.694 7 O -0.429 6.429 8 C -0.175 4.175 9 C -0.054 4.054 10 C -0.155 4.155 11 C -0.200 4.200 12 N -0.090 5.090 13 C -0.060 4.060 14 N -0.065 5.065 15 N -0.129 5.129 16 C -0.018 4.018 17 C -0.164 4.164 18 C -0.109 4.109 19 H 0.088 0.912 20 C 0.034 3.966 21 N -0.389 5.389 22 C -0.459 4.459 23 H 0.081 0.919 24 C -0.244 4.244 25 N -0.591 5.591 26 Si 0.910 3.090 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.208 0.792 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.043 0.957 48 H 0.035 0.965 49 H 0.199 0.801 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.801 0.346 -23.394 26.669 hybrid contribution -0.298 -0.456 -2.534 2.592 sum 12.503 -0.110 -25.928 28.785 Atomic orbital electron populations 1.21831 0.94410 1.02129 1.02081 1.21447 0.96094 0.99967 0.94126 0.90852 1.21683 0.78933 1.00743 0.99116 1.48160 1.07036 1.60594 1.18303 1.20611 0.89343 0.77165 0.82289 1.90666 1.75726 1.45202 1.31304 1.21622 0.91548 1.03645 1.00648 1.19597 0.84559 1.03444 0.97840 1.22055 0.97979 1.02068 0.93399 1.23408 0.83999 1.08757 1.03863 1.47258 1.08378 1.37314 1.16073 1.22268 0.83311 1.00959 0.99456 1.78353 1.15822 1.11795 1.00537 1.75091 0.95663 1.18890 1.23214 1.21883 0.98244 0.97361 0.84319 1.21924 0.96023 1.01328 0.97119 1.21355 0.94744 1.00067 0.94715 0.91167 1.20692 0.96700 0.93981 0.85177 1.42379 1.66014 1.28680 1.01781 1.20031 1.31872 1.08781 0.85255 0.91894 1.25756 0.99643 0.96678 1.02367 1.70893 1.40089 1.23135 1.25008 0.83245 0.75348 0.74923 0.75440 1.21060 1.22305 1.22330 0.91365 0.92919 0.92570 0.89196 0.91654 0.87860 0.88960 0.89388 0.89229 0.79215 0.89075 0.87965 0.88278 0.89716 0.91183 0.91549 0.89739 0.95728 0.96484 0.80082 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.82 37.16 0.33 -1.50 16 2 C -0.10 -1.30 2.41 -90.50 -0.22 -1.52 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.12 1.48 5.72 -3.71 -0.02 1.46 16 5 N -0.61 -7.59 2.97 -172.76 -0.51 -8.11 16 6 C 0.52 6.59 7.70 -10.99 -0.08 6.50 16 7 O -0.55 -8.49 15.39 5.56 0.09 -8.40 16 8 C -0.13 -1.36 4.03 -27.89 -0.11 -1.48 16 9 C -0.01 -0.14 5.08 -27.88 -0.14 -0.28 16 10 C -0.02 -0.17 6.50 -82.78 -0.54 -0.71 16 11 C -0.05 -0.36 11.53 -17.05 -0.20 -0.56 16 12 N -0.30 -2.28 3.74 -68.06 -0.25 -2.54 16 13 C 0.08 0.19 11.39 59.85 0.68 0.87 16 14 N -0.09 -1.01 13.17 60.35 0.79 -0.21 16 15 N -0.26 -3.38 12.40 33.29 0.41 -2.97 16 16 C 0.10 1.24 6.34 -3.71 -0.02 1.21 16 17 C -0.13 -1.86 5.25 -26.61 -0.14 -2.00 16 18 C -0.09 -1.41 1.73 -90.58 -0.16 -1.57 16 19 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 20 C 0.16 3.27 5.41 -4.05 -0.02 3.24 16 21 N -0.74 -18.65 5.32 -59.91 -0.32 -18.97 16 22 C -0.33 -9.38 9.99 -15.06 -0.15 -9.53 16 23 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.05 -1.39 5.50 -17.43 -0.10 -1.48 16 25 N -0.95 -29.31 13.70 55.49 0.76 -28.55 16 26 Si 1.08 26.25 29.92 -169.99 -5.09 21.16 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.07 0.93 6.29 -51.93 -0.33 0.60 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.11 7.69 -51.93 -0.40 0.71 16 36 H 0.09 0.81 7.94 -51.93 -0.41 0.39 16 37 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 39 H 0.19 0.61 8.06 -52.48 -0.42 0.18 16 40 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 41 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 43 H 0.08 0.87 5.93 -51.93 -0.31 0.56 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.41 7.15 -51.93 -0.37 1.04 16 47 H 0.03 0.51 6.14 -51.93 -0.32 0.19 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.37 9.27 5.68 -40.82 -0.23 9.03 16 50 H 0.25 7.69 6.77 -40.82 -0.28 7.41 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -37.21 397.57 -7.15 -44.36 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.13 Total: 5.55 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.89 Total: -7.33 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.88 Total: -61.34 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.09 Total: 21.16 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.21 -7.15 -44.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185811381.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.543 kcal (2) G-P(sol) polarization free energy of solvation -37.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds