Wall clock time and date at job start Wed Apr 1 2020 00:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52045 * 2 1 4 4 C 1.53190 * 109.48631 * 239.91102 * 2 1 3 5 5 N 1.46929 * 108.76543 * 185.39521 * 4 2 1 6 6 C 1.34774 * 120.63389 * 233.59219 * 5 4 2 7 7 O 1.21276 * 119.99920 * 0.03114 * 6 5 4 8 8 C 1.50697 * 119.99902 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47240 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47506 * 180.02562 * 9 8 6 11 11 C 1.35345 * 126.75637 * 124.99897 * 10 9 8 12 12 N 1.35304 * 106.17955 * 180.02562 * 11 10 9 13 13 C 1.46502 * 125.87046 * 179.97438 * 12 11 10 14 14 N 1.28718 * 108.26448 * 359.97438 * 12 11 10 15 15 N 1.28635 * 110.17266 * 359.72821 * 14 12 11 16 16 C 1.46935 * 118.73495 * 53.61812 * 5 4 2 17 17 C 1.53193 * 108.77565 * 306.39194 * 16 5 4 18 18 C 1.53037 * 109.31342 * 54.63238 * 17 16 5 19 19 H 1.09002 * 109.46037 * 58.64662 * 18 17 16 20 20 C 1.53001 * 109.45929 * 178.61351 * 18 17 16 21 21 N 1.46490 * 109.47264 * 295.02805 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.08999 * 109.46815 * 299.92165 * 1 2 3 31 31 H 1.09001 * 109.47064 * 59.92014 * 1 2 3 32 32 H 1.08999 * 109.47057 * 179.91656 * 1 2 3 33 33 H 1.09006 * 109.58476 * 65.62224 * 4 2 1 34 34 H 1.08996 * 109.71467 * 305.25820 * 4 2 1 35 35 H 1.09006 * 109.47319 * 300.00573 * 8 6 5 36 36 H 1.09006 * 109.47139 * 60.00273 * 8 6 5 37 37 H 1.09006 * 109.47018 * 300.00250 * 9 8 6 38 38 H 1.08994 * 109.47630 * 59.99855 * 9 8 6 39 39 H 1.08007 * 126.91194 * 0.02882 * 11 10 9 40 40 H 1.09000 * 109.47106 * 90.00179 * 13 12 11 41 41 H 1.08998 * 109.47269 * 209.99725 * 13 12 11 42 42 H 1.08991 * 109.47273 * 329.99811 * 13 12 11 43 43 H 1.08995 * 109.58382 * 186.59914 * 16 5 4 44 44 H 1.09001 * 109.70241 * 66.24591 * 16 5 4 45 45 H 1.09005 * 109.49420 * 294.68481 * 17 16 5 46 46 H 1.08994 * 109.49677 * 174.58495 * 17 16 5 47 47 H 1.09003 * 109.46836 * 175.02512 * 20 18 17 48 48 H 1.08999 * 109.47071 * 55.03552 * 20 18 17 49 49 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 50 50 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0411 -0.7240 -1.2496 5 7 3.5044 -0.8290 -1.1698 6 6 4.2807 -0.3862 -2.1786 7 8 3.7725 0.1050 -3.1641 8 6 5.7802 -0.5015 -2.0820 9 6 6.4184 0.0709 -3.3492 10 6 7.9179 -0.0449 -3.2528 11 6 8.7427 -0.6450 -4.1425 12 7 9.9947 -0.5069 -3.6484 13 6 11.2235 -1.0030 -4.2729 14 7 9.9206 0.1352 -2.5353 15 7 8.6961 0.4305 -2.2742 16 6 4.1054 -1.4263 0.0307 17 6 3.5709 -0.6946 1.2659 18 6 2.0409 -0.7230 1.2484 19 1 1.6970 -1.7573 1.2353 20 6 1.5038 -0.0232 2.4984 21 7 1.8926 -0.7833 3.6887 22 6 1.5219 -0.3454 4.9321 23 1 0.9425 0.5601 5.0352 24 6 1.8907 -1.0655 6.0602 25 7 2.5972 -2.1689 5.9346 26 14 1.3844 -0.4684 7.7562 27 1 1.8995 -1.4068 8.7855 28 1 1.9491 0.8844 7.9936 29 1 -0.0971 -0.4079 7.8379 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7633 -0.1582 -2.1389 34 1 1.6053 -1.7218 -1.3004 35 1 6.1323 0.0565 -1.2143 36 1 6.0579 -1.5503 -1.9767 37 1 6.0663 -0.4867 -4.2171 38 1 6.1407 1.1196 -3.4541 39 1 8.4586 -1.1354 -5.0619 40 1 11.6300 -0.2373 -4.9337 41 1 11.9540 -1.2404 -3.4995 42 1 11.0011 -1.9003 -4.8502 43 1 5.1896 -1.3240 -0.0141 44 1 3.8400 -2.4820 0.0880 45 1 3.9157 0.3394 1.2538 46 1 3.9336 -1.1891 2.1669 47 1 0.4167 0.0350 2.4434 48 1 1.9188 0.9830 2.5581 49 1 2.4132 -1.5965 3.5963 50 1 2.8598 -2.4791 5.0538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185811381.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:51 Heat of formation + Delta-G solvation = 37.030229 kcal Electronic energy + Delta-G solvation = -28774.967312 eV Core-core repulsion = 24838.245175 eV Total energy + Delta-G solvation = -3936.722137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.21428 -41.41060 -39.36551 -36.82999 -36.12058 -35.17812 -34.44260 -33.45399 -31.89677 -31.27811 -28.78656 -28.21154 -27.98513 -25.86040 -25.21041 -23.84527 -23.02213 -22.87789 -21.96168 -21.04662 -19.93501 -19.34643 -18.41242 -17.75125 -17.56623 -16.98602 -16.88624 -16.71932 -15.99818 -15.77426 -15.58750 -15.41026 -15.25458 -15.00128 -14.53272 -14.46910 -14.27928 -14.00608 -13.93369 -13.72835 -13.57505 -13.22293 -13.14677 -12.91639 -12.73291 -12.68713 -12.58951 -12.55649 -12.30981 -12.06215 -11.90222 -11.77028 -11.66692 -11.58817 -11.40546 -11.12128 -11.00278 -10.91348 -10.78277 -10.13285 -9.66696 -9.07943 -8.39283 -5.32193 0.65593 1.46716 1.57965 1.58126 1.60345 1.67917 1.84494 2.00516 2.71188 3.28628 3.39576 3.53218 3.61130 3.69612 3.75242 3.81584 3.95747 4.03680 4.08741 4.14472 4.16005 4.26947 4.33797 4.35567 4.39842 4.46575 4.55751 4.60230 4.62639 4.65120 4.69934 4.76399 4.78021 4.82515 4.93446 5.00519 5.03213 5.04905 5.12774 5.15364 5.21726 5.24239 5.30882 5.44743 5.55538 5.59371 5.70194 6.37182 6.51378 7.11280 7.11997 7.51252 8.02043 8.12883 9.13040 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012854 B = 0.002248 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.758917 B =12453.111031 C =14245.480792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.062 0.938 4 C 0.121 3.879 5 N -0.610 5.610 6 C 0.517 3.483 7 O -0.577 6.577 8 C -0.127 4.127 9 C -0.007 4.007 10 C -0.040 4.040 11 C -0.029 4.029 12 N -0.289 5.289 13 C 0.069 3.931 14 N -0.127 5.127 15 N -0.307 5.307 16 C 0.113 3.887 17 C -0.122 4.122 18 C -0.079 4.079 19 H 0.070 0.930 20 C 0.162 3.838 21 N -0.753 5.753 22 C -0.335 4.335 23 H 0.061 0.939 24 C -0.104 4.104 25 N -0.973 5.973 26 Si 1.127 2.873 27 H -0.291 1.291 28 H -0.280 1.280 29 H -0.278 1.278 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.235 0.765 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.026 0.974 48 H 0.006 0.994 49 H 0.362 0.638 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.568 -1.228 -27.785 30.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.081 0.919 4 C -0.001 4.001 5 N -0.341 5.341 6 C 0.307 3.693 7 O -0.458 6.458 8 C -0.167 4.167 9 C -0.046 4.046 10 C -0.179 4.179 11 C -0.181 4.181 12 N -0.083 5.083 13 C -0.070 4.070 14 N -0.106 5.106 15 N -0.173 5.173 16 C -0.009 4.009 17 C -0.160 4.160 18 C -0.098 4.098 19 H 0.089 0.911 20 C 0.035 3.965 21 N -0.398 5.398 22 C -0.467 4.467 23 H 0.079 0.921 24 C -0.295 4.295 25 N -0.621 5.621 26 Si 0.951 3.049 27 H -0.217 1.217 28 H -0.206 1.206 29 H -0.204 1.204 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.252 0.748 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.151 0.849 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.043 0.957 48 H 0.024 0.976 49 H 0.195 0.805 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.118 -0.496 -25.494 28.676 hybrid contribution -0.366 -0.165 -1.999 2.039 sum 12.751 -0.660 -27.493 30.314 Atomic orbital electron populations 1.21798 0.93427 1.02627 1.02277 1.21351 0.96876 0.99107 0.93406 0.91940 1.21648 0.79135 1.01286 0.98058 1.48223 1.07107 1.60461 1.18359 1.21006 0.90234 0.76271 0.81739 1.90652 1.76392 1.46351 1.32399 1.21590 0.89552 1.04729 1.00809 1.19511 0.84546 1.02549 0.98022 1.22244 0.98240 1.03363 0.94032 1.24041 0.83160 1.06769 1.04103 1.47691 1.10042 1.35588 1.14948 1.22741 0.81675 1.02762 0.99822 1.78261 1.15593 1.13991 1.02777 1.75013 0.96605 1.20498 1.25176 1.21842 0.99145 0.97428 0.82483 1.21827 0.95398 1.00878 0.97903 1.21235 0.95272 0.99662 0.93588 0.91148 1.20821 0.96697 0.93357 0.85576 1.42547 1.65941 1.28953 1.02318 1.20368 1.31025 1.08472 0.86786 0.92051 1.27175 0.99654 0.96524 1.06164 1.70993 1.41985 1.24550 1.24604 0.82640 0.76055 0.74919 0.71244 1.21704 1.20642 1.20395 0.92866 0.91000 0.91919 0.89425 0.90199 0.88765 0.87048 0.87685 0.91029 0.74840 0.87446 0.87841 0.84904 0.87935 0.89733 0.92657 0.91931 0.95661 0.97627 0.80486 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.82 71.98 0.63 -2.77 16 2 C -0.09 -2.29 2.41 -10.72 -0.03 -2.31 16 3 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.12 2.85 5.72 86.36 0.49 3.34 16 5 N -0.61 -14.35 2.97 -818.89 -2.43 -16.79 16 6 C 0.52 12.55 7.70 87.66 0.67 13.22 16 7 O -0.58 -17.21 15.39 -3.02 -0.05 -17.25 16 8 C -0.13 -2.43 4.03 29.85 0.12 -2.31 16 9 C -0.01 -0.12 5.08 29.85 0.15 0.03 16 10 C -0.04 -0.75 6.50 41.60 0.27 -0.48 16 11 C -0.03 -0.34 11.53 83.49 0.96 0.62 16 12 N -0.29 -3.91 3.74 -369.25 -1.38 -5.29 16 13 C 0.07 0.14 11.39 127.77 1.46 1.59 16 14 N -0.13 -2.98 13.17 37.02 0.49 -2.49 16 15 N -0.31 -8.02 12.40 -48.60 -0.60 -8.62 16 16 C 0.11 2.54 6.34 86.36 0.55 3.08 16 17 C -0.12 -3.62 5.25 30.67 0.16 -3.46 16 18 C -0.08 -2.46 1.73 -10.77 -0.02 -2.48 16 19 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 20 C 0.16 6.63 5.41 86.38 0.47 7.10 16 21 N -0.75 -38.50 5.32 -343.47 -1.83 -40.33 16 22 C -0.33 -19.33 9.99 84.03 0.84 -18.49 16 23 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 24 C -0.10 -6.12 5.50 84.86 0.47 -5.65 16 25 N -0.97 -61.17 13.70 21.65 0.30 -60.87 16 26 Si 1.13 52.81 29.92 68.60 2.05 54.86 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 29 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 30 H 0.05 1.42 6.29 -2.39 -0.02 1.40 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 2.17 7.01 -2.38 -0.02 2.15 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 2.02 7.69 -2.38 -0.02 2.00 16 36 H 0.11 1.71 7.94 -2.38 -0.02 1.69 16 37 H 0.10 1.49 8.08 -2.38 -0.02 1.47 16 38 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 39 H 0.24 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.13 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H 0.10 1.96 5.93 -2.39 -0.01 1.95 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.06 2.15 7.15 -2.39 -0.02 2.13 16 47 H 0.03 1.05 6.14 -2.39 -0.01 1.04 16 48 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 49 H 0.36 18.85 5.68 -92.71 -0.53 18.33 16 50 H 0.25 15.22 6.77 -92.71 -0.63 14.59 16 Total: -1.00 -82.59 397.57 4.30 -78.29 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.55 Total: 27.44 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 7.20 Total: -8.97 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -5.46 Total: -134.38 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.05 Total: -17.25 kcal Atomic # 14 Polarization: 52.81 SS G_CDS: 2.05 Total: 54.86 kcal Total: -82.59 4.30 -78.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185811381.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.324 kcal (2) G-P(sol) polarization free energy of solvation -82.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds