Wall clock time and date at job start Wed Apr 1 2020 00:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.51997 * 2 1 4 4 C 1.53186 * 109.49992 * 120.08766 * 2 1 3 5 5 N 1.46933 * 108.77607 * 174.58376 * 4 2 1 6 6 C 1.34768 * 120.62622 * 126.36744 * 5 4 2 7 7 O 1.21285 * 120.00859 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99805 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47321 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.47321 * 180.02562 * 9 8 6 11 11 C 1.35352 * 126.75024 * 124.70735 * 10 9 8 12 12 N 1.35315 * 106.16996 * 179.85573 * 11 10 9 13 13 C 1.46499 * 125.86398 * 180.19067 * 12 11 10 14 14 N 1.28714 * 108.26611 * 0.41807 * 12 11 10 15 15 N 1.28631 * 110.17870 * 359.73627 * 14 12 11 16 16 C 1.46918 * 118.73657 * 306.39322 * 5 4 2 17 17 C 1.53196 * 108.77870 * 53.60812 * 16 5 4 18 18 C 1.53039 * 109.30924 * 305.36198 * 17 16 5 19 19 H 1.08998 * 109.46355 * 301.35627 * 18 17 16 20 20 C 1.53004 * 109.45782 * 181.38658 * 18 17 16 21 21 N 1.46499 * 109.47198 * 65.00024 * 20 18 17 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31612 * 120.00054 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99751 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47517 * 89.99708 * 26 24 22 28 28 H 1.48502 * 109.46736 * 209.99481 * 26 24 22 29 29 H 1.48496 * 109.47375 * 329.99177 * 26 24 22 30 30 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46836 * 300.07377 * 1 2 3 32 32 H 1.09001 * 109.46932 * 60.07221 * 1 2 3 33 33 H 1.09000 * 109.58651 * 54.79916 * 4 2 1 34 34 H 1.08998 * 109.58840 * 294.37318 * 4 2 1 35 35 H 1.09003 * 109.47046 * 300.00136 * 8 6 5 36 36 H 1.08997 * 109.46994 * 60.00084 * 8 6 5 37 37 H 1.09003 * 109.47057 * 299.99988 * 9 8 6 38 38 H 1.08997 * 109.47133 * 60.00028 * 9 8 6 39 39 H 1.07994 * 126.91339 * 0.02562 * 11 10 9 40 40 H 1.08999 * 109.47087 * 270.29587 * 13 12 11 41 41 H 1.09000 * 109.47125 * 30.29181 * 13 12 11 42 42 H 1.09001 * 109.47360 * 150.29324 * 13 12 11 43 43 H 1.08997 * 109.59109 * 293.81514 * 16 5 4 44 44 H 1.09004 * 109.69886 * 173.46188 * 16 5 4 45 45 H 1.08996 * 109.49852 * 185.41111 * 17 16 5 46 46 H 1.09004 * 109.49542 * 65.31277 * 17 16 5 47 47 H 1.09009 * 109.46730 * 304.99811 * 20 18 17 48 48 H 1.08998 * 109.46846 * 185.00355 * 20 18 17 49 49 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 50 50 H 0.96998 * 120.00381 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7239 1.2494 5 7 3.5048 -0.8293 1.1693 6 6 4.2812 -0.3858 2.1776 7 8 3.7734 0.1055 3.1634 8 6 5.7808 -0.5004 2.0803 9 6 6.4193 0.0716 3.3476 10 6 7.9189 -0.0423 3.2501 11 6 8.8171 0.9627 3.3727 12 7 10.0372 0.3987 3.2171 13 6 11.3213 1.1017 3.2739 14 7 9.8756 -0.8606 3.0059 15 7 8.6236 -1.1557 3.0194 16 6 4.1053 -1.4267 -0.0311 17 6 3.5708 -0.6948 -1.2662 18 6 2.0408 -0.7230 -1.2485 19 1 1.6967 -1.7571 -1.2353 20 6 1.5036 -0.0230 -2.4985 21 7 1.8916 -0.7836 -3.6889 22 6 1.5251 -0.3429 -4.9326 23 1 0.9462 0.5631 -5.0355 24 6 1.8976 -1.0605 -6.0609 25 7 1.5449 -0.6372 -7.2561 26 14 2.8983 -2.6277 -5.8827 27 1 1.9814 -3.7884 -5.7517 28 1 3.7553 -2.8068 -7.0823 29 1 3.7540 -2.5338 -4.6727 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 1.6054 -1.7217 1.2978 34 1 1.7639 -0.1582 2.1388 35 1 6.0590 -1.5490 1.9753 36 1 6.1322 0.0575 1.2124 37 1 6.1411 1.1203 3.4531 38 1 6.0678 -0.4866 4.2153 39 1 8.6032 2.0046 3.5599 40 1 11.5877 1.4527 2.2769 41 1 11.2397 1.9535 3.9491 42 1 12.0919 0.4221 3.6378 43 1 3.8376 -2.4818 -0.0872 44 1 5.1899 -1.3266 0.0120 45 1 3.9333 -1.1894 -2.1674 46 1 3.9159 0.3391 -1.2542 47 1 1.9193 0.9829 -2.5585 48 1 0.4166 0.0358 -2.4431 49 1 2.4118 -1.5971 -3.5964 50 1 1.8049 -1.1387 -8.0446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185811382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:56 Heat of formation + Delta-G solvation = 65.547952 kcal Electronic energy + Delta-G solvation = -28845.668920 eV Core-core repulsion = 24910.183404 eV Total energy + Delta-G solvation = -3935.485516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.59494 -40.38474 -38.20944 -35.53872 -35.11861 -33.94714 -33.48997 -32.03121 -30.69973 -30.56458 -28.38621 -27.20280 -27.07247 -24.88500 -23.46314 -22.49638 -22.44984 -21.42970 -21.06724 -19.94987 -18.94610 -17.79345 -17.54630 -17.02107 -16.91646 -16.01279 -15.90879 -15.14507 -14.84998 -14.70745 -14.31559 -14.21856 -14.17330 -13.82412 -13.73710 -13.38771 -13.16536 -13.11834 -12.97484 -12.74448 -12.44546 -12.38835 -11.98467 -11.89341 -11.84304 -11.67125 -11.59912 -11.32195 -10.99482 -10.95930 -10.87981 -10.49742 -10.43086 -10.35469 -10.13750 -10.06114 -9.80336 -9.57572 -9.46816 -8.88336 -8.63180 -7.21068 -5.76494 -3.11495 1.21702 1.96412 2.17851 2.56285 2.93886 3.35668 3.38788 3.44845 3.88683 4.13602 4.31039 4.43299 4.58765 4.59195 4.65440 4.72565 4.74842 4.82379 4.86587 4.97944 5.01854 5.04068 5.21369 5.27588 5.34240 5.43432 5.47524 5.53761 5.62737 5.68842 5.73339 5.75617 5.77970 5.81883 5.85326 5.91676 5.93972 6.15394 6.15865 6.19933 6.24029 6.37073 6.40478 6.51405 6.75089 6.83032 7.34262 8.00404 8.09509 8.16454 8.42714 9.22147 9.94510 10.14647 11.42129 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.002471 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.516109 B =11329.322002 C =13089.304412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.074 0.926 4 C 0.117 3.883 5 N -0.608 5.608 6 C 0.517 3.483 7 O -0.549 6.549 8 C -0.134 4.134 9 C -0.015 4.015 10 C -0.017 4.017 11 C -0.048 4.048 12 N -0.296 5.296 13 C 0.081 3.919 14 N -0.087 5.087 15 N -0.264 5.264 16 C 0.104 3.896 17 C -0.128 4.128 18 C -0.093 4.093 19 H 0.071 0.929 20 C 0.161 3.839 21 N -0.755 5.755 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.002 3.998 25 N -0.935 5.935 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.191 0.809 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.024 0.976 48 H 0.033 0.967 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.165 4.133 25.056 29.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.005 4.005 5 N -0.341 5.341 6 C 0.306 3.694 7 O -0.428 6.428 8 C -0.175 4.175 9 C -0.054 4.054 10 C -0.155 4.155 11 C -0.199 4.199 12 N -0.090 5.090 13 C -0.060 4.060 14 N -0.066 5.066 15 N -0.131 5.131 16 C -0.019 4.019 17 C -0.167 4.167 18 C -0.112 4.112 19 H 0.090 0.910 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.208 0.792 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.051 0.949 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.554 3.198 25.128 29.725 hybrid contribution 0.484 -0.004 -0.098 0.494 sum 16.038 3.194 25.030 29.899 Atomic orbital electron populations 1.21843 0.94277 1.02217 1.02218 1.21441 0.96194 0.99951 0.93976 0.90771 1.21699 0.78864 1.00829 0.99143 1.48144 1.07067 1.60613 1.18292 1.20609 0.89339 0.77162 0.82285 1.90673 1.75740 1.45218 1.31151 1.21624 0.91542 1.04427 0.99880 1.19599 0.84638 1.03106 0.98092 1.22052 0.97899 0.89441 1.06147 1.23433 0.84138 1.01808 1.10477 1.47249 1.08394 1.07350 1.45977 1.22278 0.81122 0.97659 1.04962 1.78327 1.13761 0.95353 1.19176 1.75059 0.96450 1.24941 1.16619 1.21880 0.98262 0.97452 0.84304 1.21962 0.96182 1.01402 0.97107 1.21399 0.94664 1.00257 0.94918 0.91012 1.20741 0.97243 0.94064 0.84590 1.42735 1.66235 1.28539 1.02602 1.19061 1.28282 1.07917 0.81908 0.89316 1.24678 1.00774 0.98741 0.95124 1.69698 1.51020 1.40610 0.97011 0.86546 0.80408 0.84709 0.76809 1.21116 1.21794 1.20358 0.92516 0.92878 0.91207 0.91598 0.89117 0.88061 0.88802 0.89314 0.89270 0.79161 0.88956 0.88260 0.88020 0.91133 0.89717 0.89931 0.91386 0.95782 0.94931 0.80743 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.82 37.16 0.33 -1.38 16 2 C -0.10 -1.18 2.41 -90.50 -0.22 -1.40 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.38 5.72 -3.71 -0.02 1.36 16 5 N -0.61 -7.16 2.97 -172.77 -0.51 -7.67 16 6 C 0.52 6.29 7.70 -10.99 -0.08 6.20 16 7 O -0.55 -8.19 15.40 5.55 0.09 -8.11 16 8 C -0.13 -1.29 4.03 -27.88 -0.11 -1.41 16 9 C -0.01 -0.13 5.08 -27.88 -0.14 -0.28 16 10 C -0.02 -0.17 6.50 -82.77 -0.54 -0.71 16 11 C -0.05 -0.34 11.54 -17.04 -0.20 -0.54 16 12 N -0.30 -2.22 3.74 -68.06 -0.25 -2.48 16 13 C 0.08 0.19 11.39 59.85 0.68 0.87 16 14 N -0.09 -0.98 13.16 60.35 0.79 -0.18 16 15 N -0.26 -3.24 12.40 33.29 0.41 -2.83 16 16 C 0.10 1.14 6.34 -3.71 -0.02 1.11 16 17 C -0.13 -1.73 5.25 -26.61 -0.14 -1.87 16 18 C -0.09 -1.34 1.73 -90.58 -0.16 -1.50 16 19 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 20 C 0.16 2.99 5.41 -4.04 -0.02 2.97 16 21 N -0.76 -17.51 5.12 -59.90 -0.31 -17.82 16 22 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 23 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 24 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 25 N -0.94 -29.38 13.97 55.49 0.78 -28.61 16 26 Si 0.88 21.92 27.74 -169.99 -4.71 17.20 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 29 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 35 H 0.10 0.97 7.94 -51.93 -0.41 0.56 16 36 H 0.09 0.83 7.70 -51.93 -0.40 0.43 16 37 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.19 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 41 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 42 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.79 5.95 -51.93 -0.31 0.49 16 45 H 0.08 1.25 7.15 -51.93 -0.37 0.88 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 48 H 0.03 0.62 6.14 -51.93 -0.32 0.30 16 49 H 0.36 8.07 4.71 -40.82 -0.19 7.88 16 50 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -36.60 396.16 -6.85 -43.45 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.20 Total: 4.62 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.90 Total: -3.55 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.91 Total: -59.59 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.60 -6.85 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185811382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.001 kcal (2) G-P(sol) polarization free energy of solvation -36.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds