Wall clock time and date at job start Wed Apr 1 2020 00:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.51997 * 2 1 4 4 C 1.53186 * 109.49992 * 120.08766 * 2 1 3 5 5 N 1.46933 * 108.77607 * 174.58376 * 4 2 1 6 6 C 1.34768 * 120.62622 * 126.36744 * 5 4 2 7 7 O 1.21285 * 120.00859 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99805 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47321 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.47321 * 180.02562 * 9 8 6 11 11 C 1.35352 * 126.75024 * 124.70735 * 10 9 8 12 12 N 1.35315 * 106.16996 * 179.85573 * 11 10 9 13 13 C 1.46499 * 125.86398 * 180.19067 * 12 11 10 14 14 N 1.28714 * 108.26611 * 0.41807 * 12 11 10 15 15 N 1.28631 * 110.17870 * 359.73627 * 14 12 11 16 16 C 1.46918 * 118.73657 * 306.39322 * 5 4 2 17 17 C 1.53196 * 108.77870 * 53.60812 * 16 5 4 18 18 C 1.53039 * 109.30924 * 305.36198 * 17 16 5 19 19 H 1.08998 * 109.46355 * 301.35627 * 18 17 16 20 20 C 1.53004 * 109.45782 * 181.38658 * 18 17 16 21 21 N 1.46499 * 109.47198 * 65.00024 * 20 18 17 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31612 * 120.00054 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99751 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47517 * 89.99708 * 26 24 22 28 28 H 1.48502 * 109.46736 * 209.99481 * 26 24 22 29 29 H 1.48496 * 109.47375 * 329.99177 * 26 24 22 30 30 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46836 * 300.07377 * 1 2 3 32 32 H 1.09001 * 109.46932 * 60.07221 * 1 2 3 33 33 H 1.09000 * 109.58651 * 54.79916 * 4 2 1 34 34 H 1.08998 * 109.58840 * 294.37318 * 4 2 1 35 35 H 1.09003 * 109.47046 * 300.00136 * 8 6 5 36 36 H 1.08997 * 109.46994 * 60.00084 * 8 6 5 37 37 H 1.09003 * 109.47057 * 299.99988 * 9 8 6 38 38 H 1.08997 * 109.47133 * 60.00028 * 9 8 6 39 39 H 1.07994 * 126.91339 * 0.02562 * 11 10 9 40 40 H 1.08999 * 109.47087 * 270.29587 * 13 12 11 41 41 H 1.09000 * 109.47125 * 30.29181 * 13 12 11 42 42 H 1.09001 * 109.47360 * 150.29324 * 13 12 11 43 43 H 1.08997 * 109.59109 * 293.81514 * 16 5 4 44 44 H 1.09004 * 109.69886 * 173.46188 * 16 5 4 45 45 H 1.08996 * 109.49852 * 185.41111 * 17 16 5 46 46 H 1.09004 * 109.49542 * 65.31277 * 17 16 5 47 47 H 1.09009 * 109.46730 * 304.99811 * 20 18 17 48 48 H 1.08998 * 109.46846 * 185.00355 * 20 18 17 49 49 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 50 50 H 0.96998 * 120.00381 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7239 1.2494 5 7 3.5048 -0.8293 1.1693 6 6 4.2812 -0.3858 2.1776 7 8 3.7734 0.1055 3.1634 8 6 5.7808 -0.5004 2.0803 9 6 6.4193 0.0716 3.3476 10 6 7.9189 -0.0423 3.2501 11 6 8.8171 0.9627 3.3727 12 7 10.0372 0.3987 3.2171 13 6 11.3213 1.1017 3.2739 14 7 9.8756 -0.8606 3.0059 15 7 8.6236 -1.1557 3.0194 16 6 4.1053 -1.4267 -0.0311 17 6 3.5708 -0.6948 -1.2662 18 6 2.0408 -0.7230 -1.2485 19 1 1.6967 -1.7571 -1.2353 20 6 1.5036 -0.0230 -2.4985 21 7 1.8916 -0.7836 -3.6889 22 6 1.5251 -0.3429 -4.9326 23 1 0.9462 0.5631 -5.0355 24 6 1.8976 -1.0605 -6.0609 25 7 1.5449 -0.6372 -7.2561 26 14 2.8983 -2.6277 -5.8827 27 1 1.9814 -3.7884 -5.7517 28 1 3.7553 -2.8068 -7.0823 29 1 3.7540 -2.5338 -4.6727 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 1.6054 -1.7217 1.2978 34 1 1.7639 -0.1582 2.1388 35 1 6.0590 -1.5490 1.9753 36 1 6.1322 0.0575 1.2124 37 1 6.1411 1.1203 3.4531 38 1 6.0678 -0.4866 4.2153 39 1 8.6032 2.0046 3.5599 40 1 11.5877 1.4527 2.2769 41 1 11.2397 1.9535 3.9491 42 1 12.0919 0.4221 3.6378 43 1 3.8376 -2.4818 -0.0872 44 1 5.1899 -1.3266 0.0120 45 1 3.9333 -1.1894 -2.1674 46 1 3.9159 0.3391 -1.2542 47 1 1.9193 0.9829 -2.5585 48 1 0.4166 0.0358 -2.4431 49 1 2.4118 -1.5971 -3.5964 50 1 1.8049 -1.1387 -8.0446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185811382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:55 Heat of formation + Delta-G solvation = 40.440031 kcal Electronic energy + Delta-G solvation = -28846.757681 eV Core-core repulsion = 24910.183404 eV Total energy + Delta-G solvation = -3936.574277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.20465 -41.36349 -39.31961 -36.68527 -36.10542 -35.04007 -34.40727 -33.55510 -32.30811 -31.27143 -28.81506 -28.60018 -27.93862 -25.88243 -24.94025 -23.70121 -23.01807 -22.66916 -21.94613 -21.07691 -19.91723 -19.58542 -18.36366 -17.71414 -17.55463 -16.98694 -16.77256 -16.59133 -16.02101 -15.73280 -15.62761 -15.31158 -15.01521 -14.90212 -14.61886 -14.39465 -14.28821 -14.05830 -13.91202 -13.72064 -13.56643 -13.24396 -13.15124 -13.12390 -12.88095 -12.75131 -12.62515 -12.57717 -12.29952 -12.16193 -11.95035 -11.84175 -11.65470 -11.60759 -11.47673 -11.21113 -10.99637 -10.93995 -10.74689 -10.11908 -9.61642 -9.25713 -8.01364 -5.34435 0.65910 1.38354 1.42957 1.47716 1.50173 1.59502 1.63350 2.04641 2.49887 3.30008 3.30901 3.53752 3.59450 3.75112 3.76160 3.86185 4.01204 4.04568 4.07759 4.15728 4.20109 4.31697 4.34724 4.38937 4.43370 4.52602 4.63465 4.63994 4.65665 4.68920 4.75284 4.79180 4.84347 4.87852 5.00546 5.03641 5.09230 5.11841 5.13674 5.22002 5.25935 5.27923 5.38534 5.51486 5.61921 5.70065 5.77497 6.22591 6.41887 7.09978 7.16444 7.51437 7.86230 8.06496 9.20398 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.002471 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.516109 B =11329.322002 C =13089.304412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.066 0.934 4 C 0.120 3.880 5 N -0.609 5.609 6 C 0.517 3.483 7 O -0.579 6.579 8 C -0.126 4.126 9 C -0.007 4.007 10 C -0.038 4.038 11 C -0.032 4.032 12 N -0.289 5.289 13 C 0.069 3.931 14 N -0.125 5.125 15 N -0.303 5.303 16 C 0.110 3.890 17 C -0.126 4.126 18 C -0.084 4.084 19 H 0.077 0.923 20 C 0.159 3.841 21 N -0.755 5.755 22 C -0.233 4.233 23 H 0.052 0.948 24 C -0.067 4.067 25 N -0.986 5.986 26 Si 0.956 3.044 27 H -0.279 1.279 28 H -0.298 1.298 29 H -0.244 1.244 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.232 0.768 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.015 0.985 48 H 0.030 0.970 49 H 0.367 0.633 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.923 3.872 27.137 32.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.084 0.916 4 C -0.002 4.002 5 N -0.341 5.341 6 C 0.307 3.693 7 O -0.460 6.460 8 C -0.166 4.166 9 C -0.047 4.047 10 C -0.177 4.177 11 C -0.184 4.184 12 N -0.083 5.083 13 C -0.070 4.070 14 N -0.105 5.105 15 N -0.169 5.169 16 C -0.013 4.013 17 C -0.164 4.164 18 C -0.103 4.103 19 H 0.095 0.905 20 C 0.033 3.967 21 N -0.401 5.401 22 C -0.364 4.364 23 H 0.070 0.930 24 C -0.258 4.258 25 N -0.637 5.637 26 Si 0.783 3.217 27 H -0.205 1.205 28 H -0.225 1.225 29 H -0.169 1.169 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.248 0.752 40 H 0.124 0.876 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.033 0.967 48 H 0.048 0.952 49 H 0.201 0.799 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.345 2.929 27.256 32.439 hybrid contribution -0.105 0.258 -0.718 0.771 sum 17.239 3.187 26.537 31.805 Atomic orbital electron populations 1.21818 0.93638 1.02653 1.02247 1.21334 0.96679 0.99298 0.93282 0.91551 1.21651 0.79120 1.01232 0.98207 1.48217 1.07081 1.60380 1.18458 1.21004 0.90239 0.76331 0.81746 1.90660 1.76431 1.46577 1.32306 1.21586 0.89617 1.04735 1.00694 1.19511 0.84523 1.03434 0.97218 1.22236 0.98297 0.89767 1.07415 1.24035 0.83372 1.02959 1.08025 1.47664 1.10064 1.06568 1.44026 1.22731 0.79204 0.98343 1.06717 1.78239 1.13561 0.97387 1.21272 1.74980 0.97224 1.26664 1.18010 1.21895 0.99263 0.97514 0.82604 1.21905 0.95231 1.01404 0.97870 1.21303 0.95474 1.00071 0.93435 0.90504 1.20885 0.97197 0.93669 0.84970 1.42701 1.66147 1.29092 1.02127 1.19025 1.26841 1.06412 0.84124 0.92978 1.25550 1.02781 1.02908 0.94600 1.69893 1.53152 1.42613 0.98026 0.85397 0.78939 0.79685 0.77713 1.20498 1.22467 1.16863 0.91883 0.91318 0.92710 0.90414 0.89654 0.87964 0.87672 0.88242 0.90596 0.75205 0.87607 0.85053 0.87665 0.89914 0.87814 0.91220 0.91874 0.96731 0.95178 0.79944 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.82 71.98 0.63 -2.51 16 2 C -0.09 -1.98 2.41 -10.71 -0.03 -2.01 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.12 2.58 5.72 86.36 0.49 3.07 16 5 N -0.61 -12.96 2.97 -818.91 -2.43 -15.40 16 6 C 0.52 11.64 7.70 87.66 0.67 12.32 16 7 O -0.58 -16.54 15.40 -3.04 -0.05 -16.59 16 8 C -0.13 -2.20 4.03 29.85 0.12 -2.08 16 9 C -0.01 -0.12 5.08 29.85 0.15 0.03 16 10 C -0.04 -0.68 6.50 41.60 0.27 -0.41 16 11 C -0.03 -0.37 11.54 83.49 0.96 0.59 16 12 N -0.29 -3.76 3.74 -369.24 -1.38 -5.14 16 13 C 0.07 0.13 11.39 127.77 1.46 1.58 16 14 N -0.13 -2.75 13.16 37.02 0.49 -2.26 16 15 N -0.30 -7.29 12.40 -48.59 -0.60 -7.89 16 16 C 0.11 2.09 6.34 86.37 0.55 2.64 16 17 C -0.13 -3.11 5.25 30.67 0.16 -2.95 16 18 C -0.08 -2.27 1.73 -10.76 -0.02 -2.29 16 19 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 20 C 0.16 5.84 5.41 86.38 0.47 6.31 16 21 N -0.75 -34.44 5.12 -343.44 -1.76 -36.19 16 22 C -0.23 -13.31 10.47 84.03 0.88 -12.43 16 23 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 24 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 25 N -0.99 -63.52 13.97 21.65 0.30 -63.22 16 26 Si 0.96 44.83 27.74 68.60 1.90 46.73 16 27 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.24 -10.02 6.52 99.48 0.65 -9.37 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.34 6.29 -2.39 -0.02 1.33 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.98 7.00 -2.39 -0.02 1.96 16 35 H 0.10 1.79 7.94 -2.39 -0.02 1.78 16 36 H 0.11 1.61 7.70 -2.39 -0.02 1.59 16 37 H 0.10 1.41 8.08 -2.39 -0.02 1.39 16 38 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 39 H 0.23 0.52 8.06 -2.91 -0.02 0.50 16 40 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.13 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.10 1.63 5.95 -2.38 -0.01 1.61 16 45 H 0.07 1.93 7.15 -2.39 -0.02 1.91 16 46 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 48 H 0.03 1.14 6.14 -2.39 -0.01 1.13 16 49 H 0.37 15.68 4.71 -92.71 -0.44 15.25 16 50 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -81.89 396.16 4.15 -77.74 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.44 Total: 23.86 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 7.24 Total: -1.64 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -5.39 Total: -130.10 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.05 Total: -16.59 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.73 kcal Total: -81.89 4.15 -77.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185811382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.178 kcal (2) G-P(sol) polarization free energy of solvation -81.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds