Wall clock time and date at job start Wed Apr 1 2020 01:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.88683 * 2 1 4 4 C 1.54911 * 111.00603 * 236.11285 * 2 1 3 5 5 N 1.47422 * 104.83157 * 204.88042 * 4 2 1 6 6 C 1.36934 * 125.65110 * 204.09096 * 5 4 2 7 7 H 1.08004 * 119.99473 * 6.31583 * 6 5 4 8 8 C 1.38809 * 120.00615 * 186.30472 * 6 5 4 9 9 N 1.31624 * 119.99638 * 7.16357 * 8 6 5 10 10 Si 1.86798 * 120.00398 * 187.15373 * 8 6 5 11 11 H 1.48502 * 109.46838 * 265.01784 * 10 8 6 12 12 H 1.48495 * 109.47040 * 25.01433 * 10 8 6 13 13 H 1.48497 * 109.47242 * 145.01966 * 10 8 6 14 14 C 1.47030 * 108.70509 * 24.35718 * 5 4 2 15 15 C 1.54341 * 107.26234 * 358.58416 * 14 5 4 16 16 H 1.08998 * 110.66536 * 96.52410 * 15 14 5 17 17 N 1.46494 * 110.84656 * 219.67135 * 15 14 5 18 18 C 1.34774 * 120.00433 * 268.69411 * 17 15 14 19 19 O 1.21288 * 119.99523 * 0.02562 * 18 17 15 20 20 C 1.50704 * 120.00264 * 180.02562 * 18 17 15 21 21 H 1.08995 * 109.47001 * 317.04252 * 20 18 17 22 22 C 1.52997 * 109.47113 * 77.04364 * 20 18 17 23 23 N 1.46495 * 109.47113 * 180.54745 * 22 20 18 24 24 C 1.34942 * 126.04044 * 122.82169 * 23 22 20 25 25 C 1.35318 * 107.74775 * 179.97438 * 24 23 22 26 26 C 1.39870 * 107.92009 * 359.97438 * 25 24 23 27 27 N 1.30831 * 108.20182 * 359.74364 * 26 25 24 28 28 N 1.46902 * 109.46954 * 197.04452 * 20 18 17 29 29 C 1.46904 * 110.99618 * 294.13484 * 28 20 18 30 30 C 1.46897 * 111.00235 * 58.08972 * 28 20 18 31 31 H 1.09001 * 109.47361 * 182.42924 * 1 2 3 32 32 H 1.09001 * 109.47367 * 302.43310 * 1 2 3 33 33 H 1.09010 * 109.46908 * 62.43458 * 1 2 3 34 34 H 1.08999 * 110.36395 * 86.04186 * 4 2 1 35 35 H 1.08995 * 110.36808 * 323.71740 * 4 2 1 36 36 H 0.97004 * 120.00126 * 179.97438 * 9 8 6 37 37 H 1.08989 * 109.88164 * 118.13122 * 14 5 4 38 38 H 1.08998 * 109.87891 * 239.29753 * 14 5 4 39 39 H 0.97003 * 119.99846 * 88.69549 * 17 15 14 40 40 H 1.08998 * 109.47187 * 300.54717 * 22 20 18 41 41 H 1.09003 * 109.47175 * 60.54304 * 22 20 18 42 42 H 1.08001 * 126.13117 * 359.97438 * 24 23 22 43 43 H 1.08011 * 126.04103 * 180.02562 * 25 24 23 44 44 H 1.07998 * 125.89738 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47064 * 68.36054 * 29 28 20 46 46 H 1.09007 * 109.46647 * 188.35516 * 29 28 20 47 47 H 1.08993 * 109.47482 * 308.35627 * 29 28 20 48 48 H 1.08993 * 109.47430 * 60.06347 * 30 28 20 49 49 H 1.08995 * 109.47166 * 180.02562 * 30 28 20 50 50 H 1.09001 * 109.46895 * 300.06648 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4275 -1.2421 -0.7739 6 6 4.4643 -1.5652 -1.6080 7 1 4.3678 -1.4138 -2.6730 8 6 5.6393 -2.0871 -1.0849 9 7 5.7082 -2.4033 0.1909 10 14 7.1228 -2.3408 -2.1914 11 1 7.1378 -3.7410 -2.6858 12 1 7.0447 -1.4093 -3.3452 13 1 8.3650 -2.0739 -1.4229 14 6 3.4666 -1.2785 0.6954 15 6 2.0868 -0.8077 1.2021 16 1 1.4463 -1.6615 1.4229 17 7 2.2293 0.0498 2.3813 18 6 2.2018 -0.4914 3.6153 19 8 2.0594 -1.6884 3.7495 20 6 2.3477 0.3908 4.8285 21 1 3.1375 1.1213 4.6535 22 6 1.0282 1.1193 5.0911 23 7 1.1741 1.9867 6.2625 24 6 0.9627 3.3191 6.2951 25 6 1.2031 3.7442 7.5571 26 6 1.5735 2.6334 8.3221 27 7 1.5508 1.5785 7.5486 28 7 2.6926 -0.4334 5.9946 29 6 1.5887 -1.3369 6.3455 30 6 3.9333 -1.1842 5.7602 31 1 -0.3634 -1.0267 0.0436 32 1 -0.3634 0.5511 0.8674 33 1 -0.3633 0.4756 -0.9111 34 1 2.1554 -0.1716 -2.0838 35 1 1.4523 -1.6704 -1.4025 36 1 6.5292 -2.7684 0.5565 37 1 3.6616 -2.2953 1.0359 38 1 4.2430 -0.6071 1.0622 39 1 2.3435 1.0070 2.2740 40 1 0.7674 1.7232 4.2220 41 1 0.2404 0.3889 5.2755 42 1 0.6566 3.9358 5.4630 43 1 1.1224 4.7613 7.9113 44 1 1.8292 2.6439 9.3713 45 1 1.4735 -2.0897 5.5658 46 1 1.8080 -1.8270 7.2942 47 1 0.6657 -0.7644 6.4372 48 1 4.7498 -0.4872 5.5723 49 1 4.1651 -1.7862 6.6388 50 1 3.8057 -1.8359 4.8958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207547145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:59 Heat of formation + Delta-G solvation = 97.568075 kcal Electronic energy + Delta-G solvation = -30428.690842 eV Core-core repulsion = 26494.593822 eV Total energy + Delta-G solvation = -3934.097019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.25528 -40.22366 -38.10306 -36.29717 -34.22508 -33.35876 -32.64114 -30.44836 -30.21928 -29.43363 -27.77091 -27.29234 -25.70826 -24.94667 -23.78642 -22.33695 -21.07930 -20.93004 -20.36198 -20.01643 -19.41881 -17.51247 -17.06612 -16.95486 -16.25166 -15.68624 -15.44737 -14.96318 -14.62973 -14.52527 -14.22468 -13.99015 -13.77583 -13.64648 -13.40194 -13.07674 -12.88653 -12.86031 -12.64564 -12.24799 -12.16706 -11.86049 -11.77340 -11.69420 -11.50425 -11.46234 -11.19752 -11.03410 -10.82951 -10.68425 -10.49714 -10.45933 -10.16952 -10.07566 -9.92382 -9.75835 -9.43285 -8.66871 -8.65536 -8.59114 -7.93883 -6.87541 -5.73099 -3.10365 1.87245 2.34048 2.73607 2.85926 3.35253 3.37668 3.42943 3.45091 3.87440 4.35992 4.46307 4.55785 4.70208 4.82025 4.82891 4.99949 5.05314 5.22822 5.27307 5.34641 5.43227 5.49093 5.50938 5.67292 5.70903 5.73692 5.83632 5.89189 5.90838 5.94600 6.03839 6.05792 6.10219 6.19469 6.23865 6.28859 6.40621 6.55944 6.62251 6.67929 6.84306 6.88352 6.99087 7.09461 7.40965 7.54528 7.72255 7.74338 7.81091 8.21111 8.38461 9.16114 9.77705 10.42252 11.36165 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015162 B = 0.003032 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.328176 B = 9232.772428 C =10029.679458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.140 3.860 5 N -0.604 5.604 6 C -0.232 4.232 7 H 0.079 0.921 8 C -0.007 4.007 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.281 1.281 13 H -0.290 1.290 14 C 0.171 3.829 15 C 0.119 3.881 16 H 0.089 0.911 17 N -0.709 5.709 18 C 0.487 3.513 19 O -0.526 6.526 20 C 0.053 3.947 21 H 0.107 0.893 22 C 0.144 3.856 23 N -0.363 5.363 24 C 0.042 3.958 25 C -0.275 4.275 26 C 0.025 3.975 27 N -0.245 5.245 28 N -0.494 5.494 29 C 0.012 3.988 30 C 0.011 3.989 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.395 0.605 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.169 0.831 43 H 0.142 0.858 44 H 0.177 0.823 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 12.221 11.881 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.331 5.331 6 C -0.361 4.361 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.563 5.563 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.206 1.206 13 H -0.216 1.216 14 C 0.045 3.955 15 C 0.014 3.986 16 H 0.107 0.893 17 N -0.359 5.359 18 C 0.270 3.730 19 O -0.402 6.402 20 C -0.061 4.061 21 H 0.124 0.876 22 C 0.022 3.978 23 N -0.146 5.146 24 C -0.103 4.103 25 C -0.305 4.305 26 C -0.162 4.162 27 N -0.065 5.065 28 N -0.216 5.216 29 C -0.136 4.136 30 C -0.137 4.137 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.228 0.772 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.186 0.814 43 H 0.160 0.840 44 H 0.194 0.806 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.761 10.204 12.209 19.786 hybrid contribution 0.831 0.798 -1.283 1.725 sum -10.929 11.003 10.926 18.970 Atomic orbital electron populations 1.21690 0.95012 1.01758 1.00951 1.22616 0.94824 0.99444 0.96483 0.90529 1.21580 0.87672 0.95120 0.94285 1.44416 1.07802 1.79183 1.01683 1.19036 0.91466 1.35929 0.89624 0.90362 1.24840 0.98528 1.00648 0.96364 1.69968 1.26610 1.48126 1.11602 0.86118 0.82504 0.77888 0.79350 1.21584 1.20631 1.21646 1.21499 0.89714 1.00766 0.83530 1.22540 1.00343 0.92779 0.82905 0.89252 1.46188 1.72887 1.10920 1.05926 1.21611 0.76912 0.89552 0.84899 1.90657 1.48580 1.15298 1.85660 1.22203 0.98411 0.96581 0.88900 0.87553 1.21691 0.97290 0.93716 0.85117 1.48494 1.52383 1.05365 1.08326 1.22541 1.02595 0.85402 0.99776 1.21457 1.15069 1.00428 0.93528 1.23958 1.01205 0.90826 1.00232 1.77726 1.18638 1.22360 0.87781 1.62510 1.04440 1.24522 1.30081 1.22623 0.93410 0.96303 1.01275 1.22553 0.91146 0.98005 1.02001 0.92615 0.93261 0.92684 0.93954 0.96080 0.93734 0.91913 0.94872 0.77186 0.87894 0.88728 0.81367 0.84029 0.80563 0.91963 0.91943 0.92270 0.92064 0.91380 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.29 37.16 0.35 -1.31 16 2 C -0.11 -1.76 3.27 -88.47 -0.29 -2.05 16 3 H 0.08 1.12 8.01 -51.92 -0.42 0.70 16 4 C 0.14 2.75 6.70 -2.53 -0.02 2.74 16 5 N -0.60 -15.13 3.39 -170.06 -0.58 -15.71 16 6 C -0.23 -6.42 10.26 -15.06 -0.15 -6.58 16 7 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 8 C -0.01 -0.20 5.45 -17.43 -0.09 -0.29 16 9 N -0.92 -27.17 10.46 55.49 0.58 -26.59 16 10 Si 0.91 22.11 29.56 -169.99 -5.02 17.08 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.17 4.09 5.18 -3.05 -0.02 4.08 16 15 C 0.12 2.12 2.78 -66.09 -0.18 1.94 16 16 H 0.09 1.73 7.42 -51.93 -0.39 1.35 16 17 N -0.71 -10.11 5.11 -52.02 -0.27 -10.37 16 18 C 0.49 7.27 6.25 -10.98 -0.07 7.20 16 19 O -0.53 -9.84 11.61 5.55 0.06 -9.77 16 20 C 0.05 0.65 2.53 -68.86 -0.17 0.48 16 21 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 22 C 0.14 1.40 5.47 -4.05 -0.02 1.38 16 23 N -0.36 -3.87 3.66 -61.37 -0.22 -4.10 16 24 C 0.04 0.37 11.45 -17.23 -0.20 0.17 16 25 C -0.28 -2.49 10.80 -40.01 -0.43 -2.93 16 26 C 0.02 0.26 12.03 -17.37 -0.21 0.05 16 27 N -0.24 -3.07 10.95 30.62 0.34 -2.74 16 28 N -0.49 -6.80 3.84 -244.59 -0.94 -7.74 16 29 C 0.01 0.16 8.54 60.07 0.51 0.67 16 30 C 0.01 0.16 9.22 60.06 0.55 0.72 16 31 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.02 0.42 8.04 -51.93 -0.42 0.01 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.06 1.79 7.01 -51.94 -0.36 1.42 16 38 H 0.03 0.87 7.78 -51.93 -0.40 0.47 16 39 H 0.39 4.45 8.56 -40.82 -0.35 4.10 16 40 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16 41 H 0.09 0.97 6.12 -51.93 -0.32 0.65 16 42 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 44 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.06 0.98 5.56 -51.93 -0.29 0.69 16 46 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 47 H 0.06 0.76 5.69 -51.93 -0.30 0.46 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.05 0.96 5.83 -51.93 -0.30 0.66 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -34.01 392.64 -8.74 -42.74 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.15 Total: 5.02 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.45 Total: 6.25 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -1.09 Total: -67.24 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.06 Total: -9.77 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.01 -8.74 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207547145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.311 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds