Wall clock time and date at job start Tue Mar 31 2020 23:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52602 * 2 1 4 4 C 1.53046 * 109.49782 * 239.92054 * 2 1 3 5 5 C 1.53033 * 109.53823 * 178.68289 * 4 2 1 6 6 C 1.53194 * 109.31454 * 61.36637 * 5 4 2 7 7 N 1.46929 * 108.77231 * 305.36213 * 6 5 4 8 8 C 1.34771 * 120.62951 * 233.58193 * 7 6 5 9 9 O 1.21290 * 119.99587 * 176.20676 * 8 7 6 10 10 C 1.50695 * 120.00111 * 356.20606 * 8 7 6 11 11 C 1.53007 * 109.47038 * 180.02562 * 10 8 7 12 12 N 1.46494 * 109.47069 * 180.02562 * 11 10 8 13 13 C 1.34431 * 126.82868 * 124.70999 * 12 11 10 14 14 N 1.30824 * 108.08292 * 179.89350 * 13 12 11 15 15 C 1.33250 * 109.82652 * 0.37481 * 14 13 12 16 16 N 1.30710 * 108.94540 * 359.76943 * 15 14 13 17 17 C 1.46930 * 118.73457 * 53.86480 * 7 6 5 18 18 H 1.08995 * 109.59019 * 65.92627 * 17 7 6 19 19 C 1.53006 * 109.58055 * 186.34975 * 17 7 6 20 20 C 1.52998 * 109.47435 * 67.84434 * 19 17 7 21 21 N 1.46494 * 109.47051 * 186.39559 * 20 19 17 22 22 C 1.36942 * 119.99835 * 179.97438 * 21 20 19 23 23 H 1.07992 * 119.99882 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99645 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00494 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99742 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46959 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47114 * 119.99868 * 26 24 22 29 29 H 1.48503 * 109.47001 * 240.00243 * 26 24 22 30 30 H 1.08999 * 109.47193 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47016 * 300.07787 * 1 2 3 32 32 H 1.08999 * 109.46664 * 60.08019 * 1 2 3 33 33 H 1.09004 * 109.45360 * 58.65890 * 4 2 1 34 34 H 1.09001 * 109.44567 * 298.70063 * 4 2 1 35 35 H 1.08996 * 109.49875 * 301.41223 * 5 4 2 36 36 H 1.09000 * 109.49937 * 181.31951 * 5 4 2 37 37 H 1.09001 * 109.58714 * 185.57825 * 6 5 4 38 38 H 1.08997 * 109.58211 * 65.14883 * 6 5 4 39 39 H 1.09000 * 109.47306 * 60.00300 * 10 8 7 40 40 H 1.09003 * 109.47149 * 299.99702 * 10 8 7 41 41 H 1.09000 * 109.47272 * 59.99429 * 11 10 8 42 42 H 1.09003 * 109.46739 * 299.99747 * 11 10 8 43 43 H 1.08006 * 125.95437 * 0.02592 * 13 12 11 44 44 H 1.07999 * 125.52523 * 179.73134 * 15 14 13 45 45 H 1.09000 * 109.46728 * 187.84245 * 19 17 7 46 46 H 1.08996 * 109.47184 * 307.83894 * 19 17 7 47 47 H 1.09001 * 109.46628 * 306.39125 * 20 19 17 48 48 H 1.08999 * 109.47410 * 66.38884 * 20 19 17 49 49 H 0.97000 * 120.00199 * 359.97438 * 21 20 19 50 50 H 0.96993 * 120.00514 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2484 5 6 3.5708 -0.6950 -1.2661 6 6 4.1053 -1.4267 -0.0309 7 7 3.5047 -0.8291 1.1695 8 6 4.2812 -0.3865 2.1782 9 8 3.7780 0.1670 3.1329 10 6 5.7746 -0.5793 2.1198 11 6 6.4143 0.0085 3.3793 12 7 7.8662 -0.1783 3.3224 13 6 8.8063 0.7768 3.4272 14 7 9.9788 0.2051 3.3280 15 6 9.8284 -1.1071 3.1519 16 7 8.5524 -1.3903 3.1413 17 6 2.0411 -0.7290 1.2519 18 1 1.6085 -1.7283 1.2984 19 6 1.6508 0.0608 2.5029 20 6 2.0844 1.5191 2.3413 21 7 1.8499 2.2400 3.5949 22 6 2.1644 3.5695 3.6893 23 1 2.5856 4.0863 2.8398 24 6 1.9417 4.2527 4.8770 25 7 1.4278 3.6229 5.9122 26 14 2.3700 6.0664 5.0056 27 1 2.9287 6.5359 3.7123 28 1 1.1456 6.8425 5.3273 29 1 3.3768 6.2623 6.0795 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5150 0.8892 32 1 -0.3632 0.5126 -0.8907 33 1 1.6581 -0.2244 -2.1389 34 1 1.6967 -1.7572 -1.2351 35 1 3.9159 0.3388 -1.2542 36 1 3.9334 -1.1896 -2.1672 37 1 5.1896 -1.3246 0.0136 38 1 3.8375 -2.4818 -0.0869 39 1 6.1722 -0.0734 1.2400 40 1 6.0015 -1.6438 2.0605 41 1 6.0167 -0.4977 4.2590 42 1 6.1874 1.0730 3.4391 43 1 8.6252 1.8319 3.5705 44 1 10.6307 -1.8207 3.0360 45 1 0.5702 0.0159 2.6384 46 1 2.1443 -0.3707 3.3737 47 1 3.1451 1.5574 2.0932 48 1 1.5072 1.9834 1.5417 49 1 1.4719 1.7757 4.3580 50 1 1.2726 4.1001 6.7422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263949329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:07 Heat of formation + Delta-G solvation = 95.468500 kcal Electronic energy + Delta-G solvation = -30493.736261 eV Core-core repulsion = 26559.548197 eV Total energy + Delta-G solvation = -3934.188064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.13535 -40.86520 -37.80569 -35.52687 -34.62186 -33.71962 -32.73612 -31.30690 -30.92103 -30.57421 -28.37593 -26.52512 -25.67599 -24.42366 -23.28420 -22.11754 -22.07018 -21.59100 -21.26622 -19.81589 -18.70060 -17.64296 -16.85322 -16.57262 -16.13082 -15.95881 -15.50415 -14.94045 -14.86998 -14.76875 -14.39996 -14.18905 -14.05325 -13.77763 -13.46737 -13.33032 -13.07065 -12.86086 -12.57816 -12.52014 -12.47063 -12.14557 -11.89397 -11.71466 -11.44502 -11.33350 -11.11622 -10.89523 -10.83458 -10.68828 -10.45799 -10.23601 -10.18462 -10.13999 -9.90456 -9.83661 -9.80971 -9.55897 -8.79781 -8.63836 -8.29616 -6.64826 -5.61647 -2.86006 1.53163 2.16643 2.76116 2.86275 3.02542 3.48806 3.53841 3.56465 4.24295 4.29654 4.45776 4.56813 4.68318 4.70017 4.73187 4.77193 4.85567 4.92772 5.03555 5.14084 5.17296 5.29546 5.37950 5.50684 5.54840 5.57287 5.60606 5.64601 5.68909 5.70244 5.73580 5.83216 5.97910 6.00589 6.12062 6.12601 6.27979 6.31783 6.32678 6.47769 6.56929 6.61971 6.68190 6.72413 7.15088 7.27387 7.50807 7.80819 7.97178 8.39005 8.58432 9.68676 10.35260 10.69251 11.62046 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006765 B = 0.004781 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4138.097382 B = 5855.358572 C = 9255.575473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.109 3.891 7 N -0.609 5.609 8 C 0.497 3.503 9 O -0.475 6.475 10 C -0.148 4.148 11 C 0.143 3.857 12 N -0.374 5.374 13 C 0.259 3.741 14 N -0.553 5.553 15 C 0.193 3.807 16 N -0.323 5.323 17 C 0.161 3.839 18 H 0.066 0.934 19 C -0.131 4.131 20 C 0.176 3.824 21 N -0.723 5.723 22 C -0.223 4.223 23 H 0.064 0.936 24 C -0.019 4.019 25 N -0.935 5.935 26 Si 0.900 3.100 27 H -0.283 1.283 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.220 0.780 44 H 0.214 0.786 45 H 0.052 0.948 46 H 0.102 0.898 47 H 0.026 0.974 48 H -0.003 1.003 49 H 0.381 0.619 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.455 -14.082 -14.763 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.103 0.897 4 C -0.152 4.152 5 C -0.174 4.174 6 C -0.014 4.014 7 N -0.344 5.344 8 C 0.284 3.716 9 O -0.349 6.349 10 C -0.189 4.189 11 C 0.021 3.979 12 N -0.165 5.165 13 C -0.038 4.038 14 N -0.280 5.280 15 C -0.110 4.110 16 N -0.151 5.151 17 C 0.058 3.942 18 H 0.084 0.916 19 C -0.168 4.168 20 C 0.049 3.951 21 N -0.366 5.366 22 C -0.355 4.355 23 H 0.082 0.918 24 C -0.214 4.214 25 N -0.585 5.585 26 Si 0.732 3.268 27 H -0.208 1.208 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.236 0.764 44 H 0.231 0.769 45 H 0.070 0.930 46 H 0.120 0.880 47 H 0.043 0.957 48 H 0.014 0.986 49 H 0.214 0.786 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.180 -14.151 -14.336 21.741 hybrid contribution 0.003 1.059 0.192 1.077 sum 8.183 -13.091 -14.145 20.938 Atomic orbital electron populations 1.21790 0.94467 1.01497 1.02529 1.21734 0.96190 1.00908 0.93913 0.89683 1.21595 0.94808 1.00649 0.98114 1.21918 0.96646 1.01476 0.97345 1.21688 0.98091 0.96989 0.84645 1.47967 1.06697 1.61875 1.17903 1.20177 0.88122 0.79667 0.83671 1.91040 1.72973 1.37982 1.32905 1.21892 0.93807 1.04086 0.99127 1.21666 0.72522 1.04480 0.99251 1.50655 1.08357 1.04934 1.52509 1.26172 0.83670 0.97815 0.96132 1.70557 1.25147 1.07456 1.24867 1.25972 0.93673 0.92733 0.98630 1.77982 1.06892 1.04709 1.25563 1.21407 0.78206 0.98456 0.96121 0.91610 1.22376 0.99700 0.97692 0.97054 1.20761 0.96619 0.88621 0.89141 1.42233 1.76042 1.07759 1.10525 1.19233 1.33270 0.86334 0.96639 0.91790 1.24662 1.02778 0.97692 0.96293 1.69671 1.51060 1.35082 1.02676 0.86209 0.77511 0.85966 0.77129 1.20823 1.22100 1.22091 0.93021 0.91457 0.92744 0.91823 0.92067 0.91363 0.90995 0.90079 0.91557 0.88981 0.88089 0.88095 0.86463 0.76362 0.76931 0.93003 0.88044 0.95669 0.98575 0.78560 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.97 37.16 0.33 -1.31 16 2 C -0.11 -1.27 1.93 -90.27 -0.17 -1.44 16 3 H 0.08 1.21 6.17 -51.93 -0.32 0.89 16 4 C -0.11 -1.01 5.16 -26.69 -0.14 -1.15 16 5 C -0.14 -1.09 6.08 -26.61 -0.16 -1.25 16 6 C 0.11 0.91 6.33 -3.71 -0.02 0.89 16 7 N -0.61 -7.15 2.92 -164.96 -0.48 -7.64 16 8 C 0.50 6.73 6.61 -10.99 -0.07 6.65 16 9 O -0.48 -8.54 9.36 5.55 0.05 -8.48 16 10 C -0.15 -1.56 4.29 -27.88 -0.12 -1.68 16 11 C 0.14 1.65 5.84 -4.04 -0.02 1.62 16 12 N -0.37 -4.38 3.69 -62.63 -0.23 -4.61 16 13 C 0.26 2.85 12.63 -90.66 -1.14 1.71 16 14 N -0.55 -6.81 11.19 -15.83 -0.18 -6.99 16 15 C 0.19 2.15 13.03 -91.81 -1.20 0.95 16 16 N -0.32 -4.00 12.57 29.29 0.37 -3.63 16 17 C 0.16 2.08 2.69 -67.37 -0.18 1.90 16 18 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.13 -2.25 4.16 -26.73 -0.11 -2.36 16 20 C 0.18 3.69 4.23 -4.05 -0.02 3.68 16 21 N -0.72 -19.17 5.53 -59.91 -0.33 -19.50 16 22 C -0.22 -6.45 9.99 -15.06 -0.15 -6.60 16 23 H 0.06 1.82 7.83 -52.49 -0.41 1.40 16 24 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 25 N -0.93 -29.22 13.06 55.49 0.72 -28.49 16 26 Si 0.90 22.97 29.55 -169.99 -5.02 17.94 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 29 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.90 6.83 -51.93 -0.35 0.55 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.58 5.95 -51.93 -0.31 0.27 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.87 7.53 -51.93 -0.39 0.48 16 40 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 41 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 42 H 0.12 1.39 8.04 -51.93 -0.42 0.97 16 43 H 0.22 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.21 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.05 0.90 7.07 -51.93 -0.37 0.53 16 46 H 0.10 1.96 5.75 -53.02 -0.30 1.65 16 47 H 0.03 0.55 5.31 -51.93 -0.28 0.28 16 48 H 0.00 -0.07 6.62 -51.93 -0.34 -0.41 16 49 H 0.38 10.85 7.67 -40.82 -0.31 10.54 16 50 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -35.62 387.15 -10.55 -46.17 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.01 Total: 8.46 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.28 Total: 0.94 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -0.13 Total: -70.87 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.05 Total: -8.48 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.62 -10.55 -46.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263949329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.639 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds