Wall clock time and date at job start Tue Mar 31 2020 23:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49351 * 2 1 4 4 C 1.53042 * 109.49539 * 239.91144 * 2 1 3 5 5 C 1.53040 * 109.53777 * 301.41269 * 4 2 1 6 6 C 1.53625 * 109.24020 * 298.50927 * 5 4 2 7 7 N 1.46926 * 108.54360 * 54.85866 * 6 5 4 8 8 C 1.34780 * 120.63422 * 126.36548 * 7 6 5 9 9 O 1.21547 * 119.99698 * 174.29770 * 8 7 6 10 10 C 1.47867 * 119.99388 * 354.57900 * 8 7 6 11 11 N 1.34546 * 126.05396 * 5.89464 * 10 8 7 12 12 C 1.30870 * 107.26978 * 179.97438 * 11 10 8 13 13 N 1.34576 * 107.62872 * 359.97438 * 12 11 10 14 14 C 1.46494 * 125.75112 * 179.97438 * 13 12 11 15 15 N 1.28855 * 108.50045 * 359.75484 * 13 12 11 16 16 C 1.46928 * 118.73745 * 306.09427 * 7 6 5 17 17 H 1.09003 * 109.58822 * 294.07381 * 16 7 6 18 18 C 1.52996 * 109.58792 * 173.64458 * 16 7 6 19 19 C 1.53000 * 109.47246 * 182.02187 * 18 16 7 20 20 C 1.52999 * 109.47216 * 175.17862 * 19 18 16 21 21 N 1.46504 * 109.47123 * 180.02562 * 20 19 18 22 22 C 1.36943 * 119.99834 * 179.97438 * 21 20 19 23 23 H 1.07996 * 120.00034 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99624 * 179.97438 * 22 21 20 25 25 N 1.31623 * 119.99466 * 180.02562 * 24 22 21 26 26 Si 1.86792 * 120.00251 * 0.02562 * 24 22 21 27 27 H 1.48511 * 109.47055 * 90.00168 * 26 24 22 28 28 H 1.48498 * 109.47147 * 209.99797 * 26 24 22 29 29 H 1.48494 * 109.47388 * 330.00341 * 26 24 22 30 30 H 1.08997 * 109.46657 * 299.92691 * 1 2 3 31 31 H 1.09001 * 109.47607 * 59.92554 * 1 2 3 32 32 H 1.09004 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.45869 * 61.43140 * 4 2 1 34 34 H 1.08998 * 109.46084 * 181.40501 * 4 2 1 35 35 H 1.08994 * 109.49930 * 58.58737 * 5 4 2 36 36 H 1.08998 * 109.49940 * 178.65431 * 5 4 2 37 37 H 1.08996 * 109.73829 * 295.12222 * 6 5 4 38 38 H 1.08999 * 109.66521 * 174.55228 * 6 5 4 39 39 H 1.08001 * 126.18088 * 180.02562 * 12 11 10 40 40 H 1.09004 * 109.47019 * 90.00582 * 14 13 12 41 41 H 1.09004 * 109.47155 * 210.00383 * 14 13 12 42 42 H 1.08998 * 109.47464 * 330.00317 * 14 13 12 43 43 H 1.08999 * 109.47669 * 302.02590 * 18 16 7 44 44 H 1.09001 * 109.46809 * 62.02756 * 18 16 7 45 45 H 1.09000 * 109.47213 * 295.17900 * 19 18 16 46 46 H 1.08994 * 109.47112 * 55.18039 * 19 18 16 47 47 H 1.09000 * 109.47061 * 300.00132 * 20 19 18 48 48 H 1.08999 * 109.47389 * 60.00175 * 20 19 18 49 49 H 0.96996 * 119.99837 * 0.02562 * 21 20 19 50 50 H 0.97001 * 119.99301 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7233 -1.2483 5 6 1.5030 -2.1560 -1.2657 6 6 2.0190 -2.9055 -0.0280 7 7 1.6517 -2.1380 1.1699 8 6 0.9749 -2.7217 2.1788 9 8 0.7674 -2.1074 3.2068 10 6 0.4904 -4.1116 2.0372 11 7 0.7498 -4.9397 1.0089 12 6 0.1433 -6.0720 1.2595 13 7 -0.4887 -5.9431 2.4406 14 6 -1.2918 -6.9765 3.0988 15 7 -0.2647 -4.7592 2.8972 16 6 2.0414 -0.7236 1.2496 17 1 3.1276 -0.6460 1.2980 18 6 1.4230 -0.0908 2.4978 19 6 1.7888 1.3939 2.5515 20 6 1.0731 2.0531 3.7322 21 7 1.4230 3.4749 3.7832 22 6 0.8975 4.2745 4.7629 23 1 0.2255 3.8570 5.4981 24 6 1.2294 5.6215 4.8116 25 7 0.7247 6.3900 5.7535 26 14 2.3922 6.3434 3.5404 27 1 1.6108 6.8332 2.3763 28 1 3.1440 7.4736 4.1426 29 1 3.3461 5.2976 3.0916 30 1 -0.3632 0.5127 0.8906 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6986 -0.1961 -2.1389 34 1 3.1305 -0.7448 -1.2352 35 1 0.4133 -2.1357 -1.2538 36 1 1.8475 -2.6630 -2.1670 37 1 3.1033 -3.0022 -0.0817 38 1 1.5636 -3.8947 0.0181 39 1 0.1497 -6.9511 0.6322 40 1 -0.6526 -7.5748 3.7482 41 1 -2.0741 -6.5048 3.6936 42 1 -1.7464 -7.6188 2.3446 43 1 0.3388 -0.1967 2.4598 44 1 1.8060 -0.5917 3.3869 45 1 2.8667 1.4982 2.6758 46 1 1.4815 1.8776 1.6244 47 1 -0.0047 1.9488 3.6079 48 1 1.3804 1.5695 4.6594 49 1 2.0262 3.8499 3.1227 50 1 0.9564 7.3313 5.7872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264016922.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:26 Heat of formation + Delta-G solvation = 72.030854 kcal Electronic energy + Delta-G solvation = -29993.399945 eV Core-core repulsion = 26058.195548 eV Total energy + Delta-G solvation = -3935.204396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.48348 -41.73461 -38.84768 -37.45773 -35.98600 -34.99762 -34.27563 -33.36408 -32.79242 -31.25764 -29.39511 -28.08020 -27.26983 -26.04125 -24.56589 -24.41258 -23.52329 -22.75658 -21.90840 -21.30059 -19.64432 -19.61829 -18.41673 -17.77354 -17.50704 -17.20014 -16.77399 -16.55937 -16.24663 -15.90122 -15.63003 -15.42414 -15.19137 -14.92873 -14.80554 -14.70090 -14.21171 -14.01866 -13.85113 -13.78728 -13.69750 -13.27131 -13.08746 -12.99657 -12.80777 -12.67466 -12.42228 -12.27390 -12.09794 -12.05332 -11.89704 -11.72131 -11.68152 -11.47021 -11.40873 -11.23376 -10.98460 -10.63531 -10.56217 -10.19909 -9.53348 -9.33936 -8.05279 -5.40107 0.33492 1.11294 1.30535 1.36132 1.41694 1.49415 1.94032 2.26098 2.47486 3.00588 3.24925 3.37920 3.57257 3.77597 3.80199 3.90570 3.97069 4.14577 4.18257 4.23725 4.32039 4.35645 4.40327 4.52425 4.58794 4.63143 4.66382 4.69049 4.69974 4.78151 4.81741 4.90468 4.99978 5.02891 5.06095 5.09691 5.15497 5.25605 5.27412 5.30150 5.43382 5.45765 5.48104 5.55724 5.70531 5.71554 6.01340 6.18722 6.33309 6.89693 7.04477 7.16837 7.79109 8.03169 9.16662 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.002679 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.228541 B =10449.887783 C =11788.703618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.089 0.911 4 C -0.113 4.113 5 C -0.125 4.125 6 C 0.055 3.945 7 N -0.578 5.578 8 C 0.598 3.402 9 O -0.552 6.552 10 C 0.125 3.875 11 N -0.498 5.498 12 C 0.209 3.791 13 N -0.301 5.301 14 C 0.074 3.926 15 N -0.292 5.292 16 C 0.155 3.845 17 H 0.085 0.915 18 C -0.096 4.096 19 C -0.119 4.119 20 C 0.159 3.841 21 N -0.757 5.757 22 C -0.244 4.244 23 H 0.047 0.953 24 C -0.068 4.068 25 N -0.985 5.985 26 Si 0.965 3.035 27 H -0.273 1.273 28 H -0.291 1.291 29 H -0.249 1.249 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.159 0.841 39 H 0.284 0.716 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.147 0.853 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.369 0.631 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 -36.416 -21.411 42.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.150 4.150 5 C -0.163 4.163 6 C -0.066 4.066 7 N -0.310 5.310 8 C 0.382 3.618 9 O -0.428 6.428 10 C -0.154 4.154 11 N -0.225 5.225 12 C -0.084 4.084 13 N -0.096 5.096 14 C -0.065 4.065 15 N -0.133 5.133 16 C 0.053 3.947 17 H 0.103 0.897 18 C -0.134 4.134 19 C -0.157 4.157 20 C 0.033 3.967 21 N -0.403 5.403 22 C -0.375 4.375 23 H 0.066 0.934 24 C -0.259 4.259 25 N -0.635 5.635 26 Si 0.791 3.209 27 H -0.199 1.199 28 H -0.218 1.218 29 H -0.174 1.174 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.175 0.825 39 H 0.299 0.701 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.165 0.835 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.030 0.970 48 H 0.028 0.972 49 H 0.202 0.798 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.719 -35.739 -20.343 41.130 hybrid contribution 0.146 0.805 0.264 0.859 sum 0.864 -34.935 -20.079 40.303 Atomic orbital electron populations 1.21840 0.95638 1.01154 1.01416 1.21575 0.96080 1.00036 0.94455 0.89329 1.21586 1.01036 0.95799 0.96579 1.21947 1.00742 0.95602 0.98042 1.23369 1.01390 0.99797 0.82079 1.47897 1.53681 1.11039 1.18411 1.16883 0.78428 0.82872 0.83579 1.90899 1.58665 1.63071 1.30163 1.23624 1.02844 0.97485 0.91403 1.70587 1.25184 1.02152 1.24538 1.27713 0.92155 1.00015 0.88502 1.47749 1.35850 1.09366 1.16611 1.22754 0.95417 0.87229 1.01055 1.74318 1.18256 0.95542 1.25179 1.21387 0.99034 0.78888 0.95417 0.89686 1.21875 1.00786 0.92986 0.97723 1.21813 1.00380 0.95796 0.97734 1.20662 0.96534 0.82748 0.96773 1.42697 1.56871 1.06381 1.34333 1.19056 1.21570 0.91233 1.05606 0.93446 1.25646 1.02650 0.96399 1.01177 1.69916 1.50232 1.06112 1.37281 0.85264 0.79091 0.78035 0.78545 1.19882 1.21751 1.17373 0.94298 0.91594 0.93348 0.90615 0.90793 0.92490 0.88643 0.91051 0.82464 0.70061 0.87594 0.89029 0.83537 0.92696 0.91370 0.91312 0.90622 0.96973 0.97192 0.79788 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.20 71.98 0.59 -2.85 16 2 C -0.10 -2.18 2.25 -10.72 -0.02 -2.21 16 3 H 0.09 1.89 6.63 -2.39 -0.02 1.88 16 4 C -0.11 -1.72 5.43 30.62 0.17 -1.55 16 5 C -0.13 -1.79 5.75 30.82 0.18 -1.61 16 6 C 0.05 0.95 6.36 86.51 0.55 1.51 16 7 N -0.58 -14.30 2.40 -797.56 -1.92 -16.21 16 8 C 0.60 18.39 7.55 86.79 0.65 19.05 16 9 O -0.55 -21.46 12.63 -3.86 -0.05 -21.51 16 10 C 0.13 3.22 7.73 137.13 1.06 4.28 16 11 N -0.50 -8.47 7.70 -193.04 -1.49 -9.96 16 12 C 0.21 1.69 12.62 180.30 2.27 3.96 16 13 N -0.30 -3.65 3.72 -373.47 -1.39 -5.04 16 14 C 0.07 0.07 11.38 127.77 1.45 1.53 16 15 N -0.29 -7.20 12.09 -52.44 -0.63 -7.84 16 16 C 0.16 3.94 2.74 44.97 0.12 4.06 16 17 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 18 C -0.10 -3.17 2.64 30.59 0.08 -3.09 16 19 C -0.12 -4.13 5.04 30.59 0.15 -3.98 16 20 C 0.16 7.31 6.26 86.38 0.54 7.85 16 21 N -0.76 -39.91 5.41 -343.44 -1.86 -41.77 16 22 C -0.24 -15.40 10.47 84.03 0.88 -14.52 16 23 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 24 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 25 N -0.99 -66.73 13.97 21.65 0.30 -66.43 16 26 Si 0.97 47.85 27.73 68.60 1.90 49.75 16 27 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 28 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 29 H -0.25 -11.14 6.52 99.48 0.65 -10.50 16 30 H 0.04 1.13 6.34 -2.39 -0.02 1.11 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.19 5.97 -2.39 -0.01 1.18 16 33 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 0.96 6.33 -2.39 -0.02 0.94 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.16 2.70 3.61 -60.82 -0.22 2.48 16 39 H 0.28 -1.56 8.06 -2.91 -0.02 -1.58 16 40 H 0.11 -0.16 8.14 -2.39 -0.02 -0.17 16 41 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 42 H 0.15 -1.15 8.14 -2.39 -0.02 -1.16 16 43 H 0.05 2.04 5.52 -2.39 -0.01 2.03 16 44 H 0.07 2.61 6.25 -2.39 -0.01 2.60 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.08 2.41 6.28 -2.39 -0.02 2.40 16 47 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.37 17.94 5.53 -92.71 -0.51 17.43 16 50 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 Total: -1.00 -91.96 380.89 4.20 -87.77 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.18 Total: 22.61 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 9.15 Total: 8.63 kcal Atomic # 7 Polarization: -140.26 SS G_CDS: -6.98 Total: -147.25 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.90 Total: 49.75 kcal Total: -91.96 4.20 -87.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264016922.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.796 kcal (2) G-P(sol) polarization free energy of solvation -91.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds