Wall clock time and date at job start Tue Mar 31 2020 23:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47042 * 2 1 4 4 C 1.53000 * 109.47543 * 120.00493 * 2 1 3 5 5 C 1.53003 * 109.47051 * 59.99894 * 4 2 1 6 6 C 1.53001 * 109.46986 * 60.00140 * 5 4 2 7 7 C 1.53000 * 109.47111 * 299.99823 * 6 5 4 8 8 C 1.53001 * 109.47007 * 240.00667 * 2 1 3 9 9 C 1.52998 * 109.47476 * 59.99537 * 8 2 1 10 10 N 1.46492 * 109.47301 * 176.16184 * 9 8 2 11 11 C 1.36946 * 120.00176 * 175.03010 * 10 9 8 12 12 H 1.08006 * 119.99461 * 359.72156 * 11 10 9 13 13 C 1.38809 * 120.00153 * 179.72687 * 11 10 9 14 14 N 1.31621 * 119.99910 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99800 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47463 * 89.99760 * 15 13 11 17 17 H 1.48501 * 109.47290 * 209.99703 * 15 13 11 18 18 H 1.48508 * 109.47350 * 329.99459 * 15 13 11 19 19 N 1.46498 * 109.47051 * 180.02562 * 8 2 1 20 20 C 1.34778 * 120.00017 * 301.89253 * 19 8 2 21 21 O 1.21282 * 119.99846 * 355.44108 * 20 19 8 22 22 C 1.50696 * 120.00373 * 175.44795 * 20 19 8 23 23 C 1.52999 * 109.47317 * 179.97438 * 22 20 19 24 24 N 1.46499 * 109.47112 * 179.97438 * 23 22 20 25 25 C 1.34430 * 126.82405 * 124.71315 * 24 23 22 26 26 N 1.30828 * 108.07894 * 179.89520 * 25 24 23 27 27 C 1.33239 * 109.82759 * 0.38016 * 26 25 24 28 28 N 1.30707 * 108.94777 * 359.76231 * 27 26 25 29 29 H 1.09004 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46824 * 299.99357 * 1 2 3 31 31 H 1.08992 * 109.47384 * 59.99480 * 1 2 3 32 32 H 1.08995 * 109.47515 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47223 * 300.00482 * 4 2 1 34 34 H 1.09001 * 109.47043 * 180.02562 * 5 4 2 35 35 H 1.09003 * 109.47291 * 300.00280 * 5 4 2 36 36 H 1.08995 * 109.47076 * 60.00269 * 6 5 4 37 37 H 1.09003 * 109.46983 * 180.02562 * 6 5 4 38 38 H 1.08995 * 109.47515 * 300.00177 * 7 6 5 39 39 H 1.09000 * 109.47182 * 180.02562 * 7 6 5 40 40 H 1.09003 * 109.47040 * 56.16409 * 9 8 2 41 41 H 1.08995 * 109.47458 * 296.16552 * 9 8 2 42 42 H 0.96997 * 120.00446 * 354.74898 * 10 9 8 43 43 H 0.97000 * 119.99284 * 180.02562 * 14 13 11 44 44 H 0.97002 * 120.00384 * 121.89983 * 19 8 2 45 45 H 1.09005 * 109.46979 * 300.00242 * 22 20 19 46 46 H 1.09010 * 109.47345 * 59.99883 * 22 20 19 47 47 H 1.08994 * 109.47271 * 299.99715 * 23 22 20 48 48 H 1.09000 * 109.47166 * 60.00200 * 23 22 20 49 49 H 1.08002 * 125.95567 * 0.03580 * 25 24 23 50 50 H 1.08012 * 125.52324 * 179.80256 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -2.1639 1.2490 6 6 2.0401 -2.8850 -0.0003 7 6 1.5300 -2.1636 -1.2494 8 6 2.0400 -0.7211 -1.2493 9 6 1.5299 0.0001 -2.4985 10 7 2.0923 -0.6349 -3.6929 11 6 1.6965 -0.2236 -4.9378 12 1 0.9664 0.5659 -5.0388 13 6 2.2336 -0.8215 -6.0696 14 7 3.1236 -1.7833 -5.9463 15 14 1.6932 -0.2609 -7.7675 16 1 2.5783 0.8376 -8.2312 17 1 1.7800 -1.4003 -8.7159 18 1 0.2914 0.2257 -7.7054 19 7 3.5050 -0.7217 -1.2490 20 6 4.1793 0.4447 -1.2100 21 8 3.5761 1.4957 -1.2587 22 6 5.6827 0.4428 -1.1062 23 6 6.1940 1.8846 -1.0809 24 7 7.6554 1.8828 -0.9793 25 6 8.5216 2.4882 -1.8101 26 7 9.7330 2.2516 -1.3764 27 6 9.6812 1.4951 -0.2808 28 7 8.4302 1.2430 0.0020 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.1301 -0.7217 1.2489 33 1 1.6768 -0.2077 2.1392 34 1 1.8932 -2.6776 2.1392 35 1 0.4401 -2.1639 1.2491 36 1 3.1301 -2.8850 -0.0003 37 1 1.6764 -3.9125 -0.0006 38 1 0.4401 -2.1636 -1.2494 39 1 1.8929 -2.6776 -2.1395 40 1 1.8360 1.0458 -2.4648 41 1 0.4422 -0.0590 -2.5336 42 1 2.7480 -1.3439 -3.6022 43 1 3.4991 -2.2007 -6.7372 44 1 3.9897 -1.5614 -1.2770 45 1 5.9829 -0.0657 -0.1899 46 1 6.1057 -0.0773 -1.9657 47 1 5.8938 2.3927 -1.9972 48 1 5.7711 2.4051 -0.2216 49 1 8.2625 3.0705 -2.6820 50 1 10.5345 1.1472 0.2826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269660094.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:48 Heat of formation + Delta-G solvation = 55.102345 kcal Electronic energy + Delta-G solvation = -30572.145561 eV Core-core repulsion = 26636.207089 eV Total energy + Delta-G solvation = -3935.938471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.12925 -40.68288 -38.26113 -34.98890 -34.63019 -33.35312 -32.11446 -31.38127 -31.29210 -30.39043 -29.42373 -26.61133 -25.18654 -24.76001 -22.96207 -22.07576 -22.00302 -21.79699 -20.69040 -20.10065 -18.15731 -17.69366 -17.15256 -16.68863 -15.97776 -15.72864 -15.37604 -15.30935 -14.86433 -14.47703 -14.22754 -14.13652 -13.93347 -13.69587 -13.30505 -13.24224 -12.98098 -12.70158 -12.58992 -12.39967 -12.26925 -12.18242 -11.87011 -11.48222 -11.45176 -11.36142 -11.11487 -10.95343 -10.84262 -10.76376 -10.29022 -10.17031 -10.13379 -10.05941 -9.95581 -9.87614 -9.78428 -9.67198 -9.27142 -8.78281 -8.53217 -6.85615 -5.76674 -3.02528 1.53305 2.17422 2.87225 2.92010 3.42548 3.44921 3.48851 3.49880 4.23854 4.36965 4.59014 4.64985 4.74075 4.82302 4.85690 4.89579 5.03160 5.10105 5.25509 5.27816 5.30778 5.48892 5.52508 5.58539 5.59373 5.66899 5.69849 5.75371 5.78741 5.80941 5.98249 6.06679 6.12503 6.15107 6.17849 6.20023 6.30669 6.32290 6.43742 6.50888 6.51425 6.58036 6.67771 6.71403 6.90951 7.11665 7.71525 7.83512 7.97416 8.43329 8.52342 9.54725 10.13544 10.48925 11.46552 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007406 B = 0.004404 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3779.999853 B = 6356.379478 C = 9190.463837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.090 0.910 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.121 4.121 8 C 0.183 3.817 9 C 0.141 3.859 10 N -0.726 5.726 11 C -0.230 4.230 12 H 0.068 0.932 13 C -0.015 4.015 14 N -0.937 5.937 15 Si 0.904 3.096 16 H -0.291 1.291 17 H -0.292 1.292 18 H -0.283 1.283 19 N -0.706 5.706 20 C 0.528 3.472 21 O -0.536 6.536 22 C -0.154 4.154 23 C 0.147 3.853 24 N -0.375 5.375 25 C 0.258 3.742 26 N -0.552 5.552 27 C 0.194 3.806 28 N -0.321 5.321 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.042 0.958 41 H 0.027 0.973 42 H 0.381 0.619 43 H 0.253 0.747 44 H 0.397 0.603 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.220 0.780 50 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.061 1.827 16.007 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.159 4.159 8 C 0.097 3.903 9 C 0.013 3.987 10 N -0.370 5.370 11 C -0.361 4.361 12 H 0.086 0.914 13 C -0.211 4.211 14 N -0.586 5.586 15 Si 0.736 3.264 16 H -0.219 1.219 17 H -0.219 1.219 18 H -0.208 1.208 19 N -0.356 5.356 20 C 0.313 3.687 21 O -0.414 6.414 22 C -0.195 4.195 23 C 0.025 3.975 24 N -0.166 5.166 25 C -0.039 4.039 26 N -0.279 5.279 27 C -0.109 4.109 28 N -0.150 5.150 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.215 0.785 43 H 0.063 0.937 44 H 0.231 0.769 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.131 0.869 48 H 0.116 0.884 49 H 0.236 0.764 50 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.487 2.356 16.308 16.843 hybrid contribution 0.111 -0.386 -1.297 1.358 sum 3.598 1.970 15.011 15.562 Atomic orbital electron populations 1.21961 0.94982 1.01918 1.01713 1.21419 0.95922 1.01005 0.93499 0.89199 1.21495 1.00377 0.95397 0.97362 1.21576 1.00951 0.95758 0.97442 1.21551 1.00476 0.98850 0.94770 1.21815 1.01797 0.94083 0.98229 1.20554 0.78577 0.95744 0.95389 1.21159 0.95805 0.96537 0.85232 1.42232 1.50903 1.43627 1.00252 1.19233 1.18606 1.14651 0.83635 0.91415 1.24662 0.99744 0.99097 0.97580 1.69643 1.32803 1.28006 1.28186 0.86226 0.78048 0.77451 0.84718 1.21883 1.21886 1.20844 1.45897 1.07133 1.08144 1.74458 1.19968 0.88569 0.84239 0.75911 1.90658 1.69949 1.31175 1.49590 1.21862 0.94123 0.97791 1.05682 1.21581 0.72468 0.97751 1.05693 1.50646 1.08293 1.37829 1.19806 1.26143 0.84864 0.96224 0.96651 1.70547 1.22610 1.20917 1.13875 1.25980 0.94874 0.95963 0.94112 1.77991 1.04168 1.20311 1.12481 0.92259 0.93143 0.91976 0.92393 0.92560 0.92688 0.91757 0.92353 0.92067 0.90333 0.90180 0.94047 0.95554 0.78538 0.93720 0.76851 0.87964 0.88214 0.86853 0.88444 0.76420 0.76883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.15 37.16 0.30 -1.55 16 2 C -0.10 -1.33 2.01 -90.62 -0.18 -1.51 16 3 H 0.09 1.41 6.19 -51.93 -0.32 1.09 16 4 C -0.11 -1.23 5.29 -26.73 -0.14 -1.37 16 5 C -0.12 -1.24 5.65 -26.73 -0.15 -1.39 16 6 C -0.12 -1.33 5.75 -26.73 -0.15 -1.48 16 7 C -0.12 -1.71 4.36 -26.73 -0.12 -1.83 16 8 C 0.18 2.77 0.09 -131.82 -0.01 2.76 16 9 C 0.14 2.82 4.45 -4.05 -0.02 2.80 16 10 N -0.73 -17.60 5.12 -59.91 -0.31 -17.91 16 11 C -0.23 -6.35 9.99 -15.06 -0.15 -6.50 16 12 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 13 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 14 N -0.94 -27.57 13.06 55.49 0.72 -26.84 16 15 Si 0.90 22.38 29.55 -169.99 -5.02 17.35 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 N -0.71 -10.01 3.44 -47.61 -0.16 -10.18 16 20 C 0.53 7.74 7.24 -10.99 -0.08 7.66 16 21 O -0.54 -9.34 12.26 5.56 0.07 -9.28 16 22 C -0.15 -1.81 5.91 -27.89 -0.16 -1.97 16 23 C 0.15 1.62 5.84 -4.04 -0.02 1.60 16 24 N -0.38 -4.36 3.69 -62.63 -0.23 -4.59 16 25 C 0.26 2.80 12.63 -90.66 -1.14 1.66 16 26 N -0.55 -6.85 11.19 -15.83 -0.18 -7.03 16 27 C 0.19 2.20 13.03 -91.82 -1.20 1.01 16 28 N -0.32 -4.05 12.57 29.29 0.37 -3.68 16 29 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.85 6.52 -51.93 -0.34 0.51 16 32 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 36 H 0.06 0.62 6.90 -51.93 -0.36 0.26 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.11 6.43 -51.93 -0.33 0.78 16 39 H 0.08 1.33 7.22 -51.93 -0.37 0.96 16 40 H 0.04 0.93 6.27 -51.93 -0.33 0.60 16 41 H 0.03 0.54 6.64 -51.93 -0.34 0.20 16 42 H 0.38 9.50 6.58 -40.82 -0.27 9.23 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.40 5.05 7.38 -40.82 -0.30 4.74 16 45 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.10 1.23 8.14 -51.92 -0.42 0.80 16 47 H 0.11 1.20 8.04 -51.93 -0.42 0.79 16 48 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 49 H 0.22 1.54 8.06 -52.49 -0.42 1.12 16 50 H 0.21 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -33.53 384.32 -9.99 -43.52 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -7.71 Total: 13.50 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.33 Total: -0.65 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: 0.21 Total: -70.23 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.53 -9.99 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269660094.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.620 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds