Wall clock time and date at job start Tue Mar 31 2020 23:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47042 * 2 1 4 4 C 1.53000 * 109.47543 * 120.00493 * 2 1 3 5 5 C 1.53003 * 109.47051 * 59.99894 * 4 2 1 6 6 C 1.53001 * 109.46986 * 60.00140 * 5 4 2 7 7 C 1.53000 * 109.47111 * 299.99823 * 6 5 4 8 8 C 1.53001 * 109.47007 * 240.00667 * 2 1 3 9 9 C 1.52998 * 109.47476 * 59.99537 * 8 2 1 10 10 N 1.46492 * 109.47301 * 176.16184 * 9 8 2 11 11 C 1.36946 * 120.00176 * 175.03010 * 10 9 8 12 12 H 1.08006 * 119.99461 * 359.72156 * 11 10 9 13 13 C 1.38809 * 120.00153 * 179.72687 * 11 10 9 14 14 N 1.31621 * 119.99910 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99800 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47463 * 89.99760 * 15 13 11 17 17 H 1.48501 * 109.47290 * 209.99703 * 15 13 11 18 18 H 1.48508 * 109.47350 * 329.99459 * 15 13 11 19 19 N 1.46498 * 109.47051 * 180.02562 * 8 2 1 20 20 C 1.34778 * 120.00017 * 301.89253 * 19 8 2 21 21 O 1.21282 * 119.99846 * 355.44108 * 20 19 8 22 22 C 1.50696 * 120.00373 * 175.44795 * 20 19 8 23 23 C 1.52999 * 109.47317 * 179.97438 * 22 20 19 24 24 N 1.46499 * 109.47112 * 179.97438 * 23 22 20 25 25 C 1.34430 * 126.82405 * 124.71315 * 24 23 22 26 26 N 1.30828 * 108.07894 * 179.89520 * 25 24 23 27 27 C 1.33239 * 109.82759 * 0.38016 * 26 25 24 28 28 N 1.30707 * 108.94777 * 359.76231 * 27 26 25 29 29 H 1.09004 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46824 * 299.99357 * 1 2 3 31 31 H 1.08992 * 109.47384 * 59.99480 * 1 2 3 32 32 H 1.08995 * 109.47515 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47223 * 300.00482 * 4 2 1 34 34 H 1.09001 * 109.47043 * 180.02562 * 5 4 2 35 35 H 1.09003 * 109.47291 * 300.00280 * 5 4 2 36 36 H 1.08995 * 109.47076 * 60.00269 * 6 5 4 37 37 H 1.09003 * 109.46983 * 180.02562 * 6 5 4 38 38 H 1.08995 * 109.47515 * 300.00177 * 7 6 5 39 39 H 1.09000 * 109.47182 * 180.02562 * 7 6 5 40 40 H 1.09003 * 109.47040 * 56.16409 * 9 8 2 41 41 H 1.08995 * 109.47458 * 296.16552 * 9 8 2 42 42 H 0.96997 * 120.00446 * 354.74898 * 10 9 8 43 43 H 0.97000 * 119.99284 * 180.02562 * 14 13 11 44 44 H 0.97002 * 120.00384 * 121.89983 * 19 8 2 45 45 H 1.09005 * 109.46979 * 300.00242 * 22 20 19 46 46 H 1.09010 * 109.47345 * 59.99883 * 22 20 19 47 47 H 1.08994 * 109.47271 * 299.99715 * 23 22 20 48 48 H 1.09000 * 109.47166 * 60.00200 * 23 22 20 49 49 H 1.08002 * 125.95567 * 0.03580 * 25 24 23 50 50 H 1.08012 * 125.52324 * 179.80256 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -2.1639 1.2490 6 6 2.0401 -2.8850 -0.0003 7 6 1.5300 -2.1636 -1.2494 8 6 2.0400 -0.7211 -1.2493 9 6 1.5299 0.0001 -2.4985 10 7 2.0923 -0.6349 -3.6929 11 6 1.6965 -0.2236 -4.9378 12 1 0.9664 0.5659 -5.0388 13 6 2.2336 -0.8215 -6.0696 14 7 3.1236 -1.7833 -5.9463 15 14 1.6932 -0.2609 -7.7675 16 1 2.5783 0.8376 -8.2312 17 1 1.7800 -1.4003 -8.7159 18 1 0.2914 0.2257 -7.7054 19 7 3.5050 -0.7217 -1.2490 20 6 4.1793 0.4447 -1.2100 21 8 3.5761 1.4957 -1.2587 22 6 5.6827 0.4428 -1.1062 23 6 6.1940 1.8846 -1.0809 24 7 7.6554 1.8828 -0.9793 25 6 8.5216 2.4882 -1.8101 26 7 9.7330 2.2516 -1.3764 27 6 9.6812 1.4951 -0.2808 28 7 8.4302 1.2430 0.0020 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.1301 -0.7217 1.2489 33 1 1.6768 -0.2077 2.1392 34 1 1.8932 -2.6776 2.1392 35 1 0.4401 -2.1639 1.2491 36 1 3.1301 -2.8850 -0.0003 37 1 1.6764 -3.9125 -0.0006 38 1 0.4401 -2.1636 -1.2494 39 1 1.8929 -2.6776 -2.1395 40 1 1.8360 1.0458 -2.4648 41 1 0.4422 -0.0590 -2.5336 42 1 2.7480 -1.3439 -3.6022 43 1 3.4991 -2.2007 -6.7372 44 1 3.9897 -1.5614 -1.2770 45 1 5.9829 -0.0657 -0.1899 46 1 6.1057 -0.0773 -1.9657 47 1 5.8938 2.3927 -1.9972 48 1 5.7711 2.4051 -0.2216 49 1 8.2625 3.0705 -2.6820 50 1 10.5345 1.1472 0.2826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269660094.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:47 Heat of formation + Delta-G solvation = 35.752983 kcal Electronic energy + Delta-G solvation = -30572.984612 eV Core-core repulsion = 26636.207089 eV Total energy + Delta-G solvation = -3936.777523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.99588 -41.87476 -39.40779 -36.48083 -35.78179 -34.76560 -33.40736 -32.77804 -32.18157 -31.61519 -30.70680 -27.85535 -26.69811 -25.74440 -24.69648 -23.06466 -22.92316 -22.78715 -21.87358 -21.24657 -19.49635 -18.99395 -18.65414 -17.69766 -17.02639 -16.92662 -16.68987 -16.36627 -16.21390 -15.73774 -15.46827 -15.14975 -15.00218 -14.90134 -14.75511 -14.67977 -14.25806 -13.91626 -13.66069 -13.56252 -13.54943 -13.19896 -13.01616 -12.85559 -12.83943 -12.65454 -12.45273 -12.34802 -12.19035 -12.09000 -11.93956 -11.81306 -11.25897 -11.14984 -11.08333 -11.00334 -10.89820 -10.80552 -10.70362 -10.35825 -9.79320 -8.90966 -7.94448 -5.19657 0.67477 1.30032 1.45520 1.46014 1.54428 1.73006 2.01560 2.32178 2.55969 3.38861 3.46615 3.52760 3.59465 3.74244 3.81853 3.83933 3.93272 4.11540 4.14334 4.20932 4.24809 4.34661 4.38305 4.47318 4.56206 4.57375 4.67615 4.70750 4.76393 4.81012 4.85913 4.92467 4.99597 5.15043 5.19278 5.19411 5.26875 5.27790 5.28495 5.41453 5.45343 5.48555 5.49662 5.52822 5.60438 5.80504 5.84673 6.28537 6.66182 7.11412 7.34809 7.36471 8.12395 8.39689 9.28468 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007406 B = 0.004404 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3779.999853 B = 6356.379478 C = 9190.463837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.066 0.934 4 C -0.103 4.103 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.115 4.115 8 C 0.191 3.809 9 C 0.144 3.856 10 N -0.729 5.729 11 C -0.240 4.240 12 H 0.064 0.936 13 C -0.067 4.067 14 N -0.964 5.964 15 Si 0.964 3.036 16 H -0.290 1.290 17 H -0.293 1.293 18 H -0.274 1.274 19 N -0.703 5.703 20 C 0.523 3.477 21 O -0.566 6.566 22 C -0.139 4.139 23 C 0.153 3.847 24 N -0.381 5.381 25 C 0.258 3.742 26 N -0.577 5.577 27 C 0.192 3.808 28 N -0.346 5.346 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.017 0.983 41 H 0.022 0.978 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.405 0.595 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.116 0.884 48 H 0.097 0.903 49 H 0.249 0.751 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 1.389 17.310 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.085 0.915 4 C -0.140 4.140 5 C -0.152 4.152 6 C -0.150 4.150 7 C -0.153 4.153 8 C 0.105 3.895 9 C 0.016 3.984 10 N -0.372 5.372 11 C -0.372 4.372 12 H 0.082 0.918 13 C -0.260 4.260 14 N -0.615 5.615 15 Si 0.794 3.206 16 H -0.217 1.217 17 H -0.220 1.220 18 H -0.199 1.199 19 N -0.354 5.354 20 C 0.310 3.690 21 O -0.445 6.445 22 C -0.180 4.180 23 C 0.031 3.969 24 N -0.171 5.171 25 C -0.039 4.039 26 N -0.305 5.305 27 C -0.110 4.110 28 N -0.175 5.175 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.040 0.960 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.241 0.759 45 H 0.134 0.866 46 H 0.114 0.886 47 H 0.134 0.866 48 H 0.115 0.885 49 H 0.265 0.735 50 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.571 1.917 17.640 18.099 hybrid contribution 0.067 -0.192 -1.706 1.718 sum 3.638 1.725 15.933 16.434 Atomic orbital electron populations 1.21948 0.94214 1.02572 1.01652 1.21332 0.96531 0.99718 0.93686 0.91535 1.21456 1.00242 0.96048 0.96298 1.21556 1.01289 0.94775 0.97561 1.21524 1.00873 0.99169 0.93464 1.21728 1.01654 0.93141 0.98801 1.20399 0.79188 0.96145 0.93818 1.21193 0.95379 0.95590 0.86194 1.42306 1.50778 1.43506 1.00617 1.19535 1.18203 1.14254 0.85214 0.91850 1.25357 1.00261 0.99575 1.00798 1.69775 1.33909 1.29073 1.28715 0.85273 0.77958 0.76802 0.80547 1.21722 1.21991 1.19938 1.45891 1.06834 1.08589 1.74044 1.20458 0.89725 0.83764 0.75070 1.90650 1.70834 1.32183 1.50879 1.21739 0.91679 0.98520 1.06061 1.21501 0.72437 0.97154 1.05837 1.50644 1.08304 1.38167 1.20007 1.26814 0.84444 0.95622 0.96970 1.70585 1.23397 1.21833 1.14646 1.26627 0.95407 0.95121 0.93854 1.77948 1.04779 1.21377 1.13357 0.91195 0.91284 0.93995 0.92594 0.91238 0.90616 0.91205 0.91714 0.90786 0.90456 0.93078 0.96474 0.96024 0.79087 0.94123 0.75908 0.86629 0.88622 0.86622 0.88471 0.73472 0.74025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.15 71.98 0.59 -2.93 16 2 C -0.09 -2.44 2.01 -10.79 -0.02 -2.46 16 3 H 0.07 2.10 6.19 -2.38 -0.01 2.08 16 4 C -0.10 -2.10 5.29 30.60 0.16 -1.93 16 5 C -0.11 -2.00 5.65 30.60 0.17 -1.82 16 6 C -0.11 -2.27 5.75 30.59 0.18 -2.09 16 7 C -0.12 -3.19 4.36 30.60 0.13 -3.06 16 8 C 0.19 5.80 0.09 3.60 0.00 5.80 16 9 C 0.14 5.95 4.45 86.38 0.38 6.33 16 10 N -0.73 -36.27 5.12 -343.46 -1.76 -38.03 16 11 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 12 H 0.06 3.55 7.83 -2.91 -0.02 3.52 16 13 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 14 N -0.96 -57.33 13.06 21.65 0.28 -57.05 16 15 Si 0.96 46.27 29.55 68.60 2.03 48.29 16 16 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 17 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 N -0.70 -19.94 3.44 -422.93 -1.45 -21.39 16 20 C 0.52 15.43 7.24 87.66 0.63 16.06 16 21 O -0.57 -20.18 12.26 -3.03 -0.04 -20.22 16 22 C -0.14 -3.21 5.91 29.85 0.18 -3.03 16 23 C 0.15 3.30 5.84 86.38 0.50 3.81 16 24 N -0.38 -8.53 3.69 -352.07 -1.30 -9.83 16 25 C 0.26 5.30 12.63 180.36 2.28 7.58 16 26 N -0.58 -13.66 11.19 -204.00 -2.28 -15.95 16 27 C 0.19 4.14 13.03 180.77 2.36 6.49 16 28 N -0.35 -8.38 12.57 -61.24 -0.77 -9.15 16 29 H 0.07 1.52 4.81 -2.38 -0.01 1.51 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.16 6.52 -2.39 -0.02 1.14 16 32 H 0.06 1.18 7.60 -2.39 -0.02 1.16 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.18 6.43 -2.39 -0.02 1.16 16 36 H 0.06 1.23 6.90 -2.39 -0.02 1.21 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 2.14 6.43 -2.39 -0.02 2.12 16 39 H 0.05 1.72 7.22 -2.39 -0.02 1.70 16 40 H 0.02 0.81 6.27 -2.39 -0.01 0.79 16 41 H 0.02 0.92 6.64 -2.39 -0.02 0.91 16 42 H 0.38 19.25 6.58 -92.71 -0.61 18.64 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.41 10.13 7.38 -92.71 -0.68 9.45 16 45 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 46 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 47 H 0.12 2.44 8.04 -2.39 -0.02 2.42 16 48 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 49 H 0.25 3.12 8.06 -2.91 -0.02 3.09 16 50 H 0.24 3.26 8.06 -2.90 -0.02 3.23 16 Total: -1.00 -72.53 384.32 3.23 -69.30 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.32 Total: 41.30 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 8.85 Total: 12.71 kcal Atomic # 7 Polarization: -144.11 SS G_CDS: -7.28 Total: -151.39 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.04 Total: -20.22 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -72.53 3.23 -69.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269660094.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.054 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds