Wall clock time and date at job start Tue Mar 31 2020 23:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47052 * 2 1 4 4 C 1.53006 * 109.47156 * 240.00214 * 2 1 3 5 5 C 1.53003 * 109.46916 * 300.00044 * 4 2 1 6 6 C 1.52993 * 109.47082 * 300.00014 * 5 4 2 7 7 C 1.53006 * 109.47256 * 60.00195 * 6 5 4 8 8 C 1.52993 * 109.47078 * 120.00056 * 2 1 3 9 9 C 1.52992 * 109.47323 * 300.00143 * 8 2 1 10 10 N 1.46504 * 109.47367 * 185.52521 * 9 8 2 11 11 C 1.36939 * 120.00077 * 175.03975 * 10 9 8 12 12 H 1.08001 * 119.99709 * 359.97438 * 11 10 9 13 13 C 1.38806 * 119.99646 * 179.72314 * 11 10 9 14 14 N 1.31619 * 120.00351 * 0.26868 * 13 11 10 15 15 Si 1.86800 * 119.99889 * 180.27403 * 13 11 10 16 16 H 1.48499 * 109.47245 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47599 * 119.99624 * 15 13 11 18 18 H 1.48505 * 109.47087 * 239.99946 * 15 13 11 19 19 N 1.46503 * 109.47117 * 179.97438 * 8 2 1 20 20 C 1.34774 * 119.99974 * 63.93064 * 19 8 2 21 21 O 1.21279 * 120.00173 * 354.66645 * 20 19 8 22 22 C 1.50704 * 119.99795 * 174.67113 * 20 19 8 23 23 C 1.53007 * 109.46684 * 179.97438 * 22 20 19 24 24 N 1.46496 * 109.46597 * 179.97438 * 23 22 20 25 25 C 1.34433 * 126.81998 * 125.00177 * 24 23 22 26 26 N 1.30839 * 108.07638 * 179.97438 * 25 24 23 27 27 C 1.33243 * 109.82918 * 0.02562 * 26 25 24 28 28 N 1.30716 * 108.94331 * 359.75139 * 27 26 25 29 29 H 1.09003 * 109.47286 * 300.00358 * 1 2 3 30 30 H 1.09003 * 109.47439 * 59.99697 * 1 2 3 31 31 H 1.09001 * 109.47566 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46874 * 59.99742 * 4 2 1 33 33 H 1.08991 * 109.46973 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47028 * 60.00083 * 5 4 2 35 35 H 1.08997 * 109.47137 * 180.02562 * 5 4 2 36 36 H 1.09006 * 109.47224 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.47246 * 299.99936 * 6 5 4 38 38 H 1.09003 * 109.46874 * 180.02562 * 7 6 5 39 39 H 1.08997 * 109.47204 * 59.99716 * 7 6 5 40 40 H 1.08998 * 109.47522 * 65.51618 * 9 8 2 41 41 H 1.09007 * 109.47295 * 305.51907 * 9 8 2 42 42 H 0.96999 * 119.99728 * 355.03262 * 10 9 8 43 43 H 0.96998 * 120.00357 * 180.02562 * 14 13 11 44 44 H 0.97006 * 119.99705 * 243.93294 * 19 8 2 45 45 H 1.08993 * 109.47000 * 299.99648 * 22 20 19 46 46 H 1.08999 * 109.47021 * 60.00073 * 22 20 19 47 47 H 1.08993 * 109.47283 * 299.99681 * 23 22 20 48 48 H 1.09001 * 109.46672 * 60.00192 * 23 22 20 49 49 H 1.07997 * 125.96123 * 0.02562 * 25 24 23 50 50 H 1.08001 * 125.52469 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0399 -2.8850 -0.0001 7 6 1.5299 -2.1637 1.2492 8 6 2.0399 -0.7212 1.2492 9 6 1.5300 -0.0001 2.4984 10 7 2.1239 -0.6097 3.6909 11 6 1.8930 -0.0645 4.9257 12 1 1.2735 0.8150 5.0204 13 6 2.4510 -0.6455 6.0561 14 7 3.2063 -1.7172 5.9406 15 14 2.1299 0.0936 7.7413 16 1 1.2565 1.2863 7.6006 17 1 1.4594 -0.9125 8.6036 18 1 3.4191 0.4950 8.3596 19 7 3.5050 -0.7218 1.2489 20 6 4.1793 0.4424 1.3286 21 8 3.5772 1.4949 1.3030 22 6 5.6815 0.4364 1.4494 23 6 6.1931 1.8766 1.5214 24 7 7.6532 1.8706 1.6394 25 6 8.5288 2.5031 0.8391 26 7 9.7354 2.2502 1.2773 27 6 9.6708 1.4629 2.3503 28 7 8.4163 1.2071 2.6141 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2495 34 1 0.4400 -2.1637 -1.2493 35 1 1.8936 -2.6777 -2.1391 36 1 1.6769 -3.9128 -0.0004 37 1 3.1299 -2.8850 -0.0001 38 1 1.8936 -2.6774 2.1391 39 1 0.4399 -2.1637 1.2492 40 1 0.4445 -0.0848 2.5492 41 1 1.8103 1.0522 2.4504 42 1 2.6805 -1.3995 3.6057 43 1 3.5960 -2.1234 6.7306 44 1 3.9896 -1.5601 1.1913 45 1 5.9710 -0.0981 2.3541 46 1 6.1138 -0.0594 0.5803 47 1 5.9035 2.4106 0.6165 48 1 5.7606 2.3727 2.3903 49 1 8.2797 3.1142 -0.0158 50 1 10.5174 1.0984 2.9131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269660095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:53 Heat of formation + Delta-G solvation = 55.831255 kcal Electronic energy + Delta-G solvation = -30676.763340 eV Core-core repulsion = 26740.856477 eV Total energy + Delta-G solvation = -3935.906864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.07291 -40.65589 -38.24891 -34.95190 -34.59138 -33.31999 -32.12012 -31.35152 -31.23493 -30.34606 -29.42468 -26.60426 -25.18410 -24.71203 -22.95547 -22.01797 -21.99448 -21.75973 -20.68056 -20.07187 -18.14690 -17.66152 -17.11866 -16.65012 -15.98295 -15.71950 -15.39846 -15.11102 -14.84469 -14.44063 -14.32919 -14.11609 -13.85746 -13.59136 -13.35478 -13.22417 -12.91751 -12.70108 -12.52431 -12.40357 -12.31917 -12.02817 -11.95889 -11.49738 -11.44888 -11.27283 -11.09148 -10.95740 -10.82501 -10.75195 -10.28556 -10.12762 -10.10418 -10.05304 -9.91162 -9.83013 -9.74013 -9.64688 -9.22272 -8.77036 -8.51275 -6.83673 -5.73602 -2.99659 1.60289 2.23358 2.92057 2.96735 3.44994 3.50280 3.51986 3.53359 4.24602 4.43002 4.61648 4.68773 4.77501 4.82812 4.84406 4.87749 5.07448 5.16271 5.24663 5.28362 5.30105 5.47839 5.51924 5.62344 5.64524 5.68507 5.73435 5.76989 5.79409 5.84962 5.97249 6.05249 6.13369 6.17189 6.18574 6.19123 6.29201 6.39207 6.41982 6.50371 6.51656 6.60092 6.71494 6.73608 6.90748 7.11183 7.75309 7.86746 8.03053 8.46129 8.56854 9.57764 10.15749 10.51134 11.49573 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006931 B = 0.004883 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4039.078113 B = 5733.251952 C = 8797.254798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.123 4.123 8 C 0.183 3.817 9 C 0.140 3.860 10 N -0.725 5.725 11 C -0.229 4.229 12 H 0.068 0.932 13 C -0.014 4.014 14 N -0.935 5.935 15 Si 0.902 3.098 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.293 1.293 19 N -0.706 5.706 20 C 0.532 3.468 21 O -0.538 6.538 22 C -0.153 4.153 23 C 0.147 3.853 24 N -0.374 5.374 25 C 0.249 3.751 26 N -0.553 5.553 27 C 0.191 3.809 28 N -0.309 5.309 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.021 0.979 41 H 0.047 0.953 42 H 0.381 0.619 43 H 0.253 0.747 44 H 0.396 0.604 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.108 0.892 48 H 0.102 0.898 49 H 0.217 0.783 50 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 1.451 -17.776 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.160 4.160 8 C 0.097 3.903 9 C 0.012 3.988 10 N -0.369 5.369 11 C -0.361 4.361 12 H 0.086 0.914 13 C -0.210 4.210 14 N -0.585 5.585 15 Si 0.734 3.266 16 H -0.207 1.207 17 H -0.220 1.220 18 H -0.220 1.220 19 N -0.357 5.357 20 C 0.318 3.682 21 O -0.416 6.416 22 C -0.194 4.194 23 C 0.025 3.975 24 N -0.165 5.165 25 C -0.047 4.047 26 N -0.280 5.280 27 C -0.112 4.112 28 N -0.137 5.137 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.215 0.785 43 H 0.062 0.938 44 H 0.230 0.770 45 H 0.130 0.870 46 H 0.108 0.892 47 H 0.126 0.874 48 H 0.120 0.880 49 H 0.234 0.766 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.081 1.999 -17.187 17.575 hybrid contribution 0.185 -0.309 0.944 1.010 sum 3.265 1.690 -16.243 16.654 Atomic orbital electron populations 1.21966 0.95087 1.01873 1.01705 1.21439 0.95800 1.00979 0.93543 0.89208 1.21490 1.00339 0.95350 0.97400 1.21578 1.00994 0.95790 0.97399 1.21548 1.00419 0.98891 0.94780 1.21832 1.01796 0.94188 0.98223 1.20531 0.78711 0.95612 0.95407 1.21140 0.95368 0.97065 0.85213 1.42241 1.59931 1.33615 1.01162 1.19250 1.24605 1.08032 0.84202 0.91419 1.24655 1.00575 0.98140 0.97612 1.69644 1.37886 1.22689 1.28238 0.86174 0.77302 0.78177 0.84932 1.20661 1.21990 1.21994 1.45862 1.07008 1.08338 1.74461 1.19922 0.88581 0.84160 0.75558 1.90640 1.70008 1.31047 1.49861 1.21852 0.93979 0.97827 1.05728 1.21573 0.72625 0.97804 1.05512 1.50670 1.08374 1.36521 1.20944 1.26052 0.84890 0.96674 0.97126 1.70525 1.22926 1.20347 1.14220 1.26022 0.94851 0.95977 0.94347 1.78174 1.04440 1.19469 1.11594 0.91995 0.93166 0.92300 0.92579 0.92420 0.91722 0.92694 0.92021 0.92400 0.90298 0.90304 0.96118 0.93502 0.78500 0.93750 0.76996 0.87006 0.89150 0.87367 0.87958 0.76645 0.76831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.15 37.16 0.30 -1.53 16 2 C -0.10 -1.30 2.09 -90.62 -0.19 -1.49 16 3 H 0.09 1.39 6.28 -51.93 -0.33 1.06 16 4 C -0.11 -1.18 5.29 -26.73 -0.14 -1.32 16 5 C -0.12 -1.20 5.65 -26.73 -0.15 -1.35 16 6 C -0.12 -1.29 5.75 -26.73 -0.15 -1.45 16 7 C -0.12 -1.71 4.40 -26.73 -0.12 -1.82 16 8 C 0.18 2.77 0.09 -131.82 -0.01 2.76 16 9 C 0.14 2.83 4.27 -4.04 -0.02 2.81 16 10 N -0.73 -17.78 5.19 -59.91 -0.31 -18.09 16 11 C -0.23 -6.44 9.99 -15.06 -0.15 -6.59 16 12 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 13 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 14 N -0.94 -27.97 13.06 55.49 0.72 -27.24 16 15 Si 0.90 22.86 29.55 -169.99 -5.02 17.84 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 19 N -0.71 -10.12 3.57 -47.61 -0.17 -10.29 16 20 C 0.53 8.06 7.24 -10.98 -0.08 7.98 16 21 O -0.54 -9.54 12.29 5.56 0.07 -9.47 16 22 C -0.15 -1.93 5.92 -27.88 -0.16 -2.09 16 23 C 0.15 1.74 5.84 -4.04 -0.02 1.72 16 24 N -0.37 -4.64 3.69 -62.63 -0.23 -4.88 16 25 C 0.25 2.62 12.63 -90.64 -1.14 1.48 16 26 N -0.55 -6.96 11.19 -15.83 -0.18 -7.13 16 27 C 0.19 2.41 13.03 -91.81 -1.20 1.21 16 28 N -0.31 -4.54 12.57 29.29 0.37 -4.17 16 29 H 0.06 0.84 6.56 -51.93 -0.34 0.50 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.64 7.60 -51.93 -0.39 0.25 16 34 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.60 6.78 -51.93 -0.35 0.25 16 38 H 0.08 1.30 7.11 -51.93 -0.37 0.93 16 39 H 0.08 1.09 6.43 -51.93 -0.33 0.76 16 40 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 41 H 0.05 1.06 6.26 -51.93 -0.33 0.73 16 42 H 0.38 9.63 6.47 -40.82 -0.26 9.37 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.40 5.00 7.20 -40.82 -0.29 4.71 16 45 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.11 0.99 8.04 -51.93 -0.42 0.58 16 48 H 0.10 1.44 8.10 -51.93 -0.42 1.02 16 49 H 0.22 1.25 8.06 -52.49 -0.42 0.82 16 50 H 0.22 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -34.41 384.18 -10.00 -44.40 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -7.70 Total: 13.45 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -3.34 Total: -0.20 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: 0.20 Total: -71.81 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.41 -10.00 -44.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269660095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.236 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds