Wall clock time and date at job start Tue Mar 31 2020 23:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46560 * 2 1 4 4 C 1.53003 * 109.47223 * 240.00333 * 2 1 3 5 5 C 1.52998 * 109.46923 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47029 * 60.00302 * 5 4 2 7 7 C 1.53003 * 109.47021 * 299.99638 * 6 5 4 8 8 C 1.52999 * 109.47291 * 60.00225 * 7 6 5 9 9 C 1.53000 * 109.46979 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.46981 * 294.33229 * 9 8 7 11 11 C 1.36940 * 119.99457 * 183.84412 * 10 9 8 12 12 H 1.07997 * 120.00682 * 4.54749 * 11 10 9 13 13 C 1.38819 * 119.99499 * 184.55364 * 11 10 9 14 14 N 1.31622 * 119.99898 * 180.54400 * 13 11 10 15 15 Si 1.86794 * 120.00058 * 0.54821 * 13 11 10 16 16 H 1.48501 * 109.47345 * 84.82324 * 15 13 11 17 17 H 1.48501 * 109.46873 * 204.82304 * 15 13 11 18 18 H 1.48502 * 109.47265 * 324.82086 * 15 13 11 19 19 N 1.46493 * 109.47208 * 60.00029 * 8 7 6 20 20 C 1.34781 * 120.00290 * 171.19968 * 19 8 7 21 21 O 1.21284 * 119.99609 * 354.00144 * 20 19 8 22 22 C 1.50696 * 120.00178 * 174.00679 * 20 19 8 23 23 C 1.52994 * 109.47137 * 179.97438 * 22 20 19 24 24 N 1.46501 * 109.47382 * 179.97438 * 23 22 20 25 25 C 1.34426 * 126.82578 * 124.70911 * 24 23 22 26 26 N 1.30834 * 108.07884 * 179.89397 * 25 24 23 27 27 C 1.33242 * 109.82670 * 0.38411 * 26 25 24 28 28 N 1.30709 * 108.94863 * 359.76122 * 27 26 25 29 29 H 1.08995 * 109.46896 * 291.92874 * 1 2 3 30 30 H 1.08996 * 109.47508 * 51.93151 * 1 2 3 31 31 H 1.09001 * 109.46821 * 171.93066 * 1 2 3 32 32 H 1.09004 * 109.46774 * 299.99630 * 4 2 1 33 33 H 1.08997 * 109.46992 * 59.99293 * 4 2 1 34 34 H 1.08993 * 109.47388 * 300.00121 * 5 4 2 35 35 H 1.09000 * 109.46868 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47261 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47546 * 59.99410 * 6 5 4 38 38 H 1.09000 * 109.46880 * 299.99771 * 7 6 5 39 39 H 1.08998 * 109.47167 * 180.02562 * 7 6 5 40 40 H 1.08995 * 109.47245 * 54.34218 * 9 8 7 41 41 H 1.09007 * 109.46550 * 174.33372 * 9 8 7 42 42 H 0.96998 * 120.00396 * 3.84245 * 10 9 8 43 43 H 0.97000 * 120.00196 * 180.02562 * 14 13 11 44 44 H 0.97008 * 120.00068 * 351.19501 * 19 8 7 45 45 H 1.09005 * 109.47245 * 299.99567 * 22 20 19 46 46 H 1.09002 * 109.47127 * 59.99618 * 22 20 19 47 47 H 1.08996 * 109.47775 * 300.00177 * 23 22 20 48 48 H 1.09002 * 109.47124 * 59.99983 * 23 22 20 49 49 H 1.08000 * 125.96057 * 0.04296 * 25 24 23 50 50 H 1.08003 * 125.52448 * 179.72556 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5701 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7204 1.2489 8 6 2.0405 -0.7209 1.2492 9 6 1.5305 0.0008 2.4982 10 7 1.9049 -0.7633 3.6908 11 6 1.4863 -0.3506 4.9276 12 1 0.8203 0.4948 5.0181 13 6 1.9181 -1.0188 6.0651 14 7 1.5074 -0.6289 7.2532 15 14 3.0823 -2.4713 5.9097 16 1 4.4813 -1.9788 5.8364 17 1 2.9303 -3.3562 7.0925 18 1 2.7607 -3.2337 4.6765 19 7 1.5526 -2.1022 1.2495 20 6 0.2406 -2.3536 1.4284 21 8 -0.5193 -1.4473 1.6972 22 6 -0.2822 -3.7606 1.2945 23 6 -1.7915 -3.7699 1.5448 24 7 -2.2998 -5.1376 1.4141 25 6 -3.0015 -5.8274 2.3300 26 7 -3.2684 -7.0077 1.8326 27 6 -2.7488 -7.1109 0.6100 28 7 -2.1456 -5.9910 0.3093 29 1 -0.3633 0.3838 0.9533 30 1 -0.3634 0.6336 -0.8090 31 1 -0.3633 -1.0175 -0.1443 32 1 1.6768 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.9330 0.3071 -1.2497 35 1 3.9334 -1.2348 -2.1393 36 1 5.1705 -1.4416 -0.0008 37 1 3.7175 -2.4694 -0.0002 38 1 3.9335 0.3074 1.2488 39 1 3.9345 -1.2338 2.1389 40 1 1.9739 0.9952 2.5497 41 1 0.4452 0.0891 2.4490 42 1 2.4491 -1.5615 3.6043 43 1 1.8094 -1.0955 8.0482 44 1 2.1739 -2.8361 1.1208 45 1 -0.0780 -4.1300 0.2895 46 1 0.2109 -4.4024 2.0246 47 1 -1.9954 -3.4006 2.5499 48 1 -2.2848 -3.1280 0.8150 49 1 -3.2958 -5.4689 3.3054 50 1 -2.8147 -7.9794 -0.0286 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269660096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:09 Heat of formation + Delta-G solvation = 77.417904 kcal Electronic energy + Delta-G solvation = -31032.396105 eV Core-core repulsion = 27097.425309 eV Total energy + Delta-G solvation = -3934.970796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 7.40 seconds Orbital eigenvalues (eV) -42.15948 -40.97157 -38.12670 -35.07074 -34.69635 -33.37155 -32.61896 -31.59282 -31.32526 -30.53276 -29.57162 -26.62445 -25.26180 -25.05534 -22.72465 -22.10160 -21.88478 -21.24024 -20.71279 -20.39077 -18.99877 -17.81072 -17.68200 -16.71930 -16.31437 -15.68845 -15.46868 -14.96864 -14.85675 -14.46566 -14.36134 -14.18457 -14.04854 -13.71765 -13.68777 -13.48470 -12.95957 -12.75854 -12.63646 -12.57764 -12.16966 -11.99649 -11.89098 -11.65051 -11.53729 -11.47675 -11.20929 -11.02179 -10.89770 -10.86211 -10.47921 -10.29432 -10.16962 -10.08143 -9.94087 -9.86224 -9.77722 -9.56969 -9.33349 -8.75251 -8.48491 -7.12323 -5.74181 -3.07202 1.50296 2.14457 2.84266 2.87537 3.29632 3.34419 3.35588 3.41369 4.21880 4.33659 4.58226 4.60534 4.66729 4.70647 4.73523 4.77933 4.95173 5.04658 5.08141 5.12855 5.23304 5.40325 5.46402 5.48333 5.54110 5.56865 5.59741 5.62585 5.67443 5.77833 5.91076 5.95927 6.01302 6.08734 6.10167 6.13305 6.23012 6.26980 6.29208 6.36805 6.44230 6.52647 6.64363 6.68295 6.93443 7.10665 7.74442 7.94629 8.05289 8.44397 8.49342 9.25326 9.97413 10.18524 11.44990 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007928 B = 0.004888 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.786635 B = 5726.711804 C = 8008.957413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.122 4.122 8 C 0.177 3.823 9 C 0.138 3.862 10 N -0.747 5.747 11 C -0.229 4.229 12 H 0.089 0.911 13 C 0.001 3.999 14 N -0.937 5.937 15 Si 0.882 3.118 16 H -0.285 1.285 17 H -0.293 1.293 18 H -0.283 1.283 19 N -0.712 5.712 20 C 0.520 3.480 21 O -0.509 6.509 22 C -0.153 4.153 23 C 0.146 3.854 24 N -0.376 5.376 25 C 0.259 3.741 26 N -0.552 5.552 27 C 0.194 3.806 28 N -0.323 5.323 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.022 0.978 41 H 0.075 0.925 42 H 0.355 0.645 43 H 0.258 0.742 44 H 0.393 0.607 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.116 0.884 48 H 0.098 0.902 49 H 0.220 0.780 50 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 -6.570 -18.828 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.160 4.160 8 C 0.091 3.909 9 C 0.011 3.989 10 N -0.392 5.392 11 C -0.359 4.359 12 H 0.106 0.894 13 C -0.194 4.194 14 N -0.586 5.586 15 Si 0.713 3.287 16 H -0.212 1.212 17 H -0.219 1.219 18 H -0.210 1.210 19 N -0.364 5.364 20 C 0.305 3.695 21 O -0.385 6.385 22 C -0.194 4.194 23 C 0.024 3.976 24 N -0.166 5.166 25 C -0.038 4.038 26 N -0.279 5.279 27 C -0.109 4.109 28 N -0.151 5.151 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.040 0.960 41 H 0.092 0.908 42 H 0.188 0.812 43 H 0.068 0.932 44 H 0.228 0.772 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.134 0.866 48 H 0.117 0.883 49 H 0.237 0.763 50 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.500 -5.787 -18.978 19.897 hybrid contribution 1.336 -1.387 0.231 1.939 sum -0.164 -7.174 -18.747 20.074 Atomic orbital electron populations 1.22393 0.93782 1.01732 1.02085 1.21474 0.96970 0.99135 0.93554 0.90689 1.21558 0.95033 1.00737 0.97468 1.21538 0.95975 1.00686 0.97396 1.21566 1.00245 0.99163 0.94804 1.21814 0.93873 1.02311 0.97987 1.20670 0.93083 0.81321 0.95815 1.21315 1.00744 0.92953 0.83878 1.42518 1.63844 1.30031 1.02838 1.19060 1.22677 1.12353 0.81838 0.89368 1.24638 1.00404 0.99160 0.95169 1.69691 1.48936 1.43043 0.96917 0.86620 0.81968 0.83670 0.76447 1.21183 1.21942 1.21019 1.45848 1.07916 1.08500 1.74160 1.19829 0.82749 0.89633 0.77297 1.90747 1.57118 1.45329 1.45303 1.21863 0.95685 0.96677 1.05183 1.21611 0.93681 0.76632 1.05691 1.50652 1.40631 1.13776 1.11539 1.26175 0.92546 0.88030 0.97053 1.70558 1.27606 1.19045 1.10740 1.25979 0.94859 0.96955 0.93146 1.77986 1.25426 1.02998 1.08677 0.89686 0.95237 0.92397 0.92150 0.92385 0.91980 0.92424 0.91904 0.92377 0.90225 0.90954 0.96011 0.90788 0.81190 0.93219 0.77236 0.88083 0.88665 0.86596 0.88340 0.76341 0.76902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 7.29 37.16 0.27 -1.66 16 2 C -0.09 -1.13 2.07 -90.62 -0.19 -1.31 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.12 5.04 -26.73 -0.13 -1.26 16 5 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 6 C -0.12 -1.19 5.75 -26.73 -0.15 -1.34 16 7 C -0.12 -1.56 4.69 -26.73 -0.13 -1.68 16 8 C 0.18 2.47 0.32 -131.82 -0.04 2.43 16 9 C 0.14 2.63 4.45 -4.04 -0.02 2.61 16 10 N -0.75 -17.05 4.97 -59.91 -0.30 -17.35 16 11 C -0.23 -6.42 10.47 -15.06 -0.16 -6.58 16 12 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 13 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 14 N -0.94 -29.39 13.97 55.49 0.78 -28.62 16 15 Si 0.88 21.84 27.65 -169.99 -4.70 17.14 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 18 H -0.28 -6.51 6.65 56.52 0.38 -6.13 16 19 N -0.71 -9.22 3.59 -47.61 -0.17 -9.39 16 20 C 0.52 7.12 5.89 -10.99 -0.06 7.06 16 21 O -0.51 -8.33 9.44 5.55 0.05 -8.27 16 22 C -0.15 -1.70 5.91 -27.89 -0.16 -1.86 16 23 C 0.15 1.57 5.84 -4.04 -0.02 1.55 16 24 N -0.38 -4.29 3.69 -62.63 -0.23 -4.52 16 25 C 0.26 2.80 12.63 -90.66 -1.14 1.65 16 26 N -0.55 -6.79 11.19 -15.83 -0.18 -6.97 16 27 C 0.19 2.16 13.03 -91.82 -1.20 0.96 16 28 N -0.32 -3.97 12.57 29.29 0.37 -3.61 16 29 H 0.08 1.36 5.04 -51.93 -0.26 1.10 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.79 5.33 -51.93 -0.28 0.51 16 32 H 0.06 0.63 7.61 -51.93 -0.39 0.23 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.54 6.70 -51.93 -0.35 0.19 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.06 7.15 -51.93 -0.37 0.69 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 1.54 4.25 -51.92 -0.22 1.32 16 42 H 0.36 7.86 4.44 -40.82 -0.18 7.68 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.39 4.36 7.07 -40.82 -0.29 4.07 16 45 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.12 1.24 8.04 -51.93 -0.42 0.82 16 48 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 49 H 0.22 1.58 8.06 -52.49 -0.42 1.16 16 50 H 0.21 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -34.44 380.36 -9.88 -44.33 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -7.84 Total: 12.27 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.40 Total: -0.74 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: 0.27 Total: -70.45 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.05 Total: -8.27 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.70 Total: 17.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.44 -9.88 -44.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269660096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.744 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.40 seconds