Wall clock time and date at job start Tue Mar 31 2020 23:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46560 * 2 1 4 4 C 1.53003 * 109.47223 * 240.00333 * 2 1 3 5 5 C 1.52998 * 109.46923 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47029 * 60.00302 * 5 4 2 7 7 C 1.53003 * 109.47021 * 299.99638 * 6 5 4 8 8 C 1.52999 * 109.47291 * 60.00225 * 7 6 5 9 9 C 1.53000 * 109.46979 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.46981 * 294.33229 * 9 8 7 11 11 C 1.36940 * 119.99457 * 183.84412 * 10 9 8 12 12 H 1.07997 * 120.00682 * 4.54749 * 11 10 9 13 13 C 1.38819 * 119.99499 * 184.55364 * 11 10 9 14 14 N 1.31622 * 119.99898 * 180.54400 * 13 11 10 15 15 Si 1.86794 * 120.00058 * 0.54821 * 13 11 10 16 16 H 1.48501 * 109.47345 * 84.82324 * 15 13 11 17 17 H 1.48501 * 109.46873 * 204.82304 * 15 13 11 18 18 H 1.48502 * 109.47265 * 324.82086 * 15 13 11 19 19 N 1.46493 * 109.47208 * 60.00029 * 8 7 6 20 20 C 1.34781 * 120.00290 * 171.19968 * 19 8 7 21 21 O 1.21284 * 119.99609 * 354.00144 * 20 19 8 22 22 C 1.50696 * 120.00178 * 174.00679 * 20 19 8 23 23 C 1.52994 * 109.47137 * 179.97438 * 22 20 19 24 24 N 1.46501 * 109.47382 * 179.97438 * 23 22 20 25 25 C 1.34426 * 126.82578 * 124.70911 * 24 23 22 26 26 N 1.30834 * 108.07884 * 179.89397 * 25 24 23 27 27 C 1.33242 * 109.82670 * 0.38411 * 26 25 24 28 28 N 1.30709 * 108.94863 * 359.76122 * 27 26 25 29 29 H 1.08995 * 109.46896 * 291.92874 * 1 2 3 30 30 H 1.08996 * 109.47508 * 51.93151 * 1 2 3 31 31 H 1.09001 * 109.46821 * 171.93066 * 1 2 3 32 32 H 1.09004 * 109.46774 * 299.99630 * 4 2 1 33 33 H 1.08997 * 109.46992 * 59.99293 * 4 2 1 34 34 H 1.08993 * 109.47388 * 300.00121 * 5 4 2 35 35 H 1.09000 * 109.46868 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47261 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47546 * 59.99410 * 6 5 4 38 38 H 1.09000 * 109.46880 * 299.99771 * 7 6 5 39 39 H 1.08998 * 109.47167 * 180.02562 * 7 6 5 40 40 H 1.08995 * 109.47245 * 54.34218 * 9 8 7 41 41 H 1.09007 * 109.46550 * 174.33372 * 9 8 7 42 42 H 0.96998 * 120.00396 * 3.84245 * 10 9 8 43 43 H 0.97000 * 120.00196 * 180.02562 * 14 13 11 44 44 H 0.97008 * 120.00068 * 351.19501 * 19 8 7 45 45 H 1.09005 * 109.47245 * 299.99567 * 22 20 19 46 46 H 1.09002 * 109.47127 * 59.99618 * 22 20 19 47 47 H 1.08996 * 109.47775 * 300.00177 * 23 22 20 48 48 H 1.09002 * 109.47124 * 59.99983 * 23 22 20 49 49 H 1.08000 * 125.96057 * 0.04296 * 25 24 23 50 50 H 1.08003 * 125.52448 * 179.72556 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5701 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7204 1.2489 8 6 2.0405 -0.7209 1.2492 9 6 1.5305 0.0008 2.4982 10 7 1.9049 -0.7633 3.6908 11 6 1.4863 -0.3506 4.9276 12 1 0.8203 0.4948 5.0181 13 6 1.9181 -1.0188 6.0651 14 7 1.5074 -0.6289 7.2532 15 14 3.0823 -2.4713 5.9097 16 1 4.4813 -1.9788 5.8364 17 1 2.9303 -3.3562 7.0925 18 1 2.7607 -3.2337 4.6765 19 7 1.5526 -2.1022 1.2495 20 6 0.2406 -2.3536 1.4284 21 8 -0.5193 -1.4473 1.6972 22 6 -0.2822 -3.7606 1.2945 23 6 -1.7915 -3.7699 1.5448 24 7 -2.2998 -5.1376 1.4141 25 6 -3.0015 -5.8274 2.3300 26 7 -3.2684 -7.0077 1.8326 27 6 -2.7488 -7.1109 0.6100 28 7 -2.1456 -5.9910 0.3093 29 1 -0.3633 0.3838 0.9533 30 1 -0.3634 0.6336 -0.8090 31 1 -0.3633 -1.0175 -0.1443 32 1 1.6768 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.9330 0.3071 -1.2497 35 1 3.9334 -1.2348 -2.1393 36 1 5.1705 -1.4416 -0.0008 37 1 3.7175 -2.4694 -0.0002 38 1 3.9335 0.3074 1.2488 39 1 3.9345 -1.2338 2.1389 40 1 1.9739 0.9952 2.5497 41 1 0.4452 0.0891 2.4490 42 1 2.4491 -1.5615 3.6043 43 1 1.8094 -1.0955 8.0482 44 1 2.1739 -2.8361 1.1208 45 1 -0.0780 -4.1300 0.2895 46 1 0.2109 -4.4024 2.0246 47 1 -1.9954 -3.4006 2.5499 48 1 -2.2848 -3.1280 0.8150 49 1 -3.2958 -5.4689 3.3054 50 1 -2.8147 -7.9794 -0.0286 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269660096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:08 Heat of formation + Delta-G solvation = 56.539386 kcal Electronic energy + Delta-G solvation = -31033.301465 eV Core-core repulsion = 27097.425309 eV Total energy + Delta-G solvation = -3935.876157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 7.66 seconds Orbital eigenvalues (eV) -43.00251 -42.07947 -39.17070 -36.54751 -35.80377 -34.66305 -33.67843 -33.29352 -32.18450 -31.76828 -30.69053 -27.89480 -26.59686 -25.96761 -24.40683 -22.93037 -22.82010 -22.36327 -21.80659 -21.38233 -20.18104 -19.61142 -18.74505 -17.65664 -17.39997 -16.74386 -16.60818 -16.36468 -16.04329 -15.72486 -15.25632 -15.17117 -15.03425 -14.99691 -14.83366 -14.67899 -14.45863 -14.19158 -13.72371 -13.58543 -13.48730 -13.15447 -12.98081 -12.86822 -12.74415 -12.64457 -12.51245 -12.44474 -12.14255 -12.06947 -11.83547 -11.79129 -11.34352 -11.08628 -11.05109 -11.00754 -10.83900 -10.77765 -10.70673 -10.34878 -9.63764 -9.15571 -8.00272 -5.31156 0.66691 1.29806 1.30658 1.37661 1.44510 1.79084 2.00938 2.32514 2.47521 3.30786 3.47084 3.52495 3.57715 3.67696 3.76819 3.79322 3.90438 3.95874 4.14371 4.18180 4.21256 4.29797 4.35674 4.48337 4.54491 4.58583 4.66395 4.69417 4.74775 4.79917 4.92277 4.93923 5.04008 5.12032 5.19590 5.23268 5.26529 5.27287 5.34995 5.39199 5.44229 5.49337 5.55234 5.73372 5.77436 5.82307 5.83936 6.22877 6.69678 7.11048 7.11365 7.42914 7.87580 8.09913 9.22235 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007928 B = 0.004888 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.786635 B = 5726.711804 C = 8008.957413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.103 4.103 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.121 4.121 8 C 0.187 3.813 9 C 0.136 3.864 10 N -0.741 5.741 11 C -0.221 4.221 12 H 0.045 0.955 13 C -0.065 4.065 14 N -0.988 5.988 15 Si 0.954 3.046 16 H -0.277 1.277 17 H -0.299 1.299 18 H -0.251 1.251 19 N -0.707 5.707 20 C 0.514 3.486 21 O -0.540 6.540 22 C -0.139 4.139 23 C 0.150 3.850 24 N -0.380 5.380 25 C 0.257 3.743 26 N -0.577 5.577 27 C 0.192 3.808 28 N -0.345 5.345 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.010 0.990 41 H 0.056 0.944 42 H 0.363 0.637 43 H 0.256 0.744 44 H 0.406 0.594 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.113 0.887 48 H 0.096 0.904 49 H 0.247 0.753 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.634 -8.799 -21.501 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.141 4.141 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.159 4.159 8 C 0.100 3.900 9 C 0.009 3.991 10 N -0.386 5.386 11 C -0.352 4.352 12 H 0.063 0.937 13 C -0.256 4.256 14 N -0.639 5.639 15 Si 0.782 3.218 16 H -0.203 1.203 17 H -0.226 1.226 18 H -0.176 1.176 19 N -0.360 5.360 20 C 0.301 3.699 21 O -0.418 6.418 22 C -0.180 4.180 23 C 0.028 3.972 24 N -0.170 5.170 25 C -0.039 4.039 26 N -0.305 5.305 27 C -0.110 4.110 28 N -0.173 5.173 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.074 0.926 42 H 0.197 0.803 43 H 0.065 0.935 44 H 0.243 0.757 45 H 0.134 0.866 46 H 0.116 0.884 47 H 0.132 0.868 48 H 0.114 0.886 49 H 0.263 0.737 50 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.198 -8.027 -21.721 23.157 hybrid contribution 0.693 -0.569 1.082 1.405 sum 0.891 -8.595 -20.638 22.374 Atomic orbital electron populations 1.22253 0.94764 1.01616 1.00617 1.21434 0.96012 0.99290 0.93978 0.90843 1.21501 0.95932 1.00510 0.96121 1.21524 0.94870 1.01029 0.97779 1.21543 1.01034 0.99300 0.93227 1.21798 0.92434 1.02546 0.99113 1.20470 0.94098 0.81609 0.93807 1.21398 0.99801 0.92873 0.84996 1.42381 1.63548 1.30499 1.02174 1.18963 1.21251 1.10810 0.84187 0.93703 1.25459 1.02802 1.02831 0.94515 1.69898 1.51030 1.45062 0.97915 0.85443 0.79373 0.79666 0.77356 1.20320 1.22635 1.17599 1.45810 1.08047 1.08410 1.73728 1.20315 0.82716 0.90399 0.76515 1.90766 1.57879 1.46541 1.46616 1.21749 0.95567 0.94634 1.06053 1.21529 0.93606 0.76540 1.05510 1.50654 1.40933 1.13793 1.11654 1.26785 0.91691 0.87681 0.97790 1.70594 1.28525 1.19845 1.11513 1.26627 0.93802 0.97483 0.93106 1.77944 1.26472 1.03554 1.09344 0.92897 0.94228 0.92482 0.91851 0.91414 0.91868 0.90445 0.90565 0.91217 0.90527 0.92631 0.97239 0.92603 0.80328 0.93545 0.75700 0.86607 0.88436 0.86846 0.88573 0.73718 0.74017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 7.29 71.98 0.52 -3.09 16 2 C -0.09 -2.03 2.07 -10.79 -0.02 -2.05 16 3 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 4 C -0.10 -1.77 5.04 30.59 0.15 -1.62 16 5 C -0.11 -1.66 5.92 30.59 0.18 -1.48 16 6 C -0.11 -1.81 5.75 30.59 0.18 -1.64 16 7 C -0.12 -2.83 4.69 30.59 0.14 -2.69 16 8 C 0.19 5.00 0.32 3.60 0.00 5.00 16 9 C 0.14 5.27 4.45 86.38 0.38 5.66 16 10 N -0.74 -33.97 4.97 -343.45 -1.71 -35.67 16 11 C -0.22 -12.77 10.47 84.03 0.88 -11.89 16 12 H 0.04 2.93 8.06 -2.91 -0.02 2.90 16 13 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 14 N -0.99 -63.92 13.97 21.65 0.30 -63.62 16 15 Si 0.95 44.86 27.65 68.60 1.90 46.75 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 18 H -0.25 -10.35 6.65 99.48 0.66 -9.69 16 19 N -0.71 -16.93 3.59 -422.93 -1.52 -18.45 16 20 C 0.51 13.51 5.89 87.66 0.52 14.03 16 21 O -0.54 -17.87 9.44 -3.04 -0.03 -17.90 16 22 C -0.14 -2.83 5.91 29.84 0.18 -2.66 16 23 C 0.15 3.10 5.84 86.38 0.50 3.61 16 24 N -0.38 -8.17 3.69 -352.07 -1.30 -9.47 16 25 C 0.26 5.20 12.63 180.36 2.28 7.47 16 26 N -0.58 -13.33 11.19 -204.00 -2.28 -15.62 16 27 C 0.19 3.95 13.03 180.77 2.36 6.30 16 28 N -0.34 -7.92 12.57 -61.24 -0.77 -8.69 16 29 H 0.05 1.76 5.04 -2.39 -0.01 1.75 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.51 5.33 -2.39 -0.01 1.50 16 32 H 0.06 1.08 7.61 -2.38 -0.02 1.06 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 0.97 6.70 -2.38 -0.02 0.96 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.50 7.15 -2.39 -0.02 1.48 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.06 2.44 4.25 -2.38 -0.01 2.43 16 42 H 0.36 15.53 4.44 -92.71 -0.41 15.12 16 43 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.41 7.69 7.07 -92.70 -0.66 7.04 16 45 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 46 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.11 2.39 8.04 -2.39 -0.02 2.37 16 48 H 0.10 2.03 8.10 -2.39 -0.02 2.01 16 49 H 0.25 3.18 8.06 -2.91 -0.02 3.15 16 50 H 0.24 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -77.07 380.36 3.16 -73.91 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.15 Total: 37.18 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 8.72 Total: 11.57 kcal Atomic # 7 Polarization: -144.24 SS G_CDS: -7.28 Total: -151.52 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.03 Total: -17.90 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.75 kcal Total: -77.07 3.16 -73.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269660096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.447 kcal (2) G-P(sol) polarization free energy of solvation -77.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.66 seconds