Wall clock time and date at job start Tue Mar 31 2020 23:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.52740 * 2 1 4 4 C 1.53046 * 109.49725 * 239.92122 * 2 1 3 5 5 C 1.53033 * 109.53849 * 178.68529 * 4 2 1 6 6 C 1.53193 * 109.31647 * 61.36815 * 5 4 2 7 7 N 1.46925 * 108.76880 * 305.36192 * 6 5 4 8 8 C 1.34778 * 120.62893 * 233.57921 * 7 6 5 9 9 O 1.21287 * 119.99781 * 185.14247 * 8 7 6 10 10 C 1.50701 * 120.00212 * 5.15447 * 8 7 6 11 11 C 1.52998 * 109.47032 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46679 * 180.02562 * 11 10 8 13 13 C 1.35346 * 126.75281 * 125.00102 * 12 11 10 14 14 N 1.35319 * 106.17614 * 179.97438 * 13 12 11 15 15 C 1.46499 * 125.86942 * 179.97438 * 14 13 12 16 16 N 1.28711 * 108.26100 * 0.02562 * 14 13 12 17 17 N 1.28635 * 110.18135 * 359.71379 * 16 14 13 18 18 C 1.46927 * 118.74267 * 53.61306 * 7 6 5 19 19 H 1.09003 * 109.58878 * 66.31127 * 18 7 6 20 20 C 1.52996 * 109.59050 * 186.59924 * 18 7 6 21 21 N 1.46504 * 109.46922 * 286.90497 * 20 18 7 22 22 C 1.36933 * 119.99622 * 185.41292 * 21 20 18 23 23 H 1.07998 * 120.00369 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99856 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99967 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00148 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47220 * 90.00275 * 26 24 22 28 28 H 1.48503 * 109.47051 * 210.00129 * 26 24 22 29 29 H 1.48500 * 109.46994 * 330.00385 * 26 24 22 30 30 H 1.08994 * 109.46652 * 299.91354 * 1 2 3 31 31 H 1.08996 * 109.46777 * 59.91337 * 1 2 3 32 32 H 1.08999 * 109.47294 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.45888 * 58.66061 * 4 2 1 34 34 H 1.09001 * 109.44586 * 298.69988 * 4 2 1 35 35 H 1.09001 * 109.50140 * 301.41000 * 5 4 2 36 36 H 1.09001 * 109.49729 * 181.32098 * 5 4 2 37 37 H 1.08999 * 109.58801 * 185.58116 * 6 5 4 38 38 H 1.08991 * 109.70426 * 65.21682 * 6 5 4 39 39 H 1.08998 * 109.46848 * 299.99358 * 10 8 7 40 40 H 1.08996 * 109.47128 * 59.99125 * 10 8 7 41 41 H 1.08998 * 109.47105 * 299.99600 * 11 10 8 42 42 H 1.08996 * 109.47552 * 59.99784 * 11 10 8 43 43 H 1.07999 * 126.91717 * 0.03511 * 13 12 11 44 44 H 1.08997 * 109.47349 * 90.00029 * 15 14 13 45 45 H 1.09002 * 109.47054 * 210.00209 * 15 14 13 46 46 H 1.09001 * 109.47097 * 329.99948 * 15 14 13 47 47 H 1.09002 * 109.47225 * 46.90137 * 20 18 7 48 48 H 1.08996 * 109.47157 * 166.90574 * 20 18 7 49 49 H 0.97001 * 119.99930 * 5.40959 * 21 20 18 50 50 H 0.97003 * 120.00133 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6950 -1.2661 6 6 4.1053 -1.4269 -0.0309 7 7 3.5047 -0.8292 1.1694 8 6 4.2812 -0.3867 2.1782 9 8 3.7727 0.0186 3.2020 10 6 5.7813 -0.3951 2.0339 11 6 6.4196 0.1542 3.3113 12 6 7.9196 0.1463 3.1666 13 6 8.7538 1.2008 3.3221 14 7 10.0025 0.7297 3.0988 15 6 11.2386 1.5139 3.1554 16 7 9.9175 -0.5255 2.8271 17 7 8.6891 -0.9055 2.8650 18 6 2.0414 -0.7239 1.2496 19 1 1.6054 -1.7216 1.3004 20 6 1.6518 0.0703 2.4979 21 7 1.8734 -0.7530 3.6893 22 6 1.4905 -0.2923 4.9206 23 1 1.0248 0.6777 5.0135 24 6 1.6999 -1.0725 6.0494 25 7 2.2669 -2.2549 5.9362 26 14 1.1769 -0.4445 7.7292 27 1 -0.2208 -0.8655 8.0019 28 1 2.0752 -1.0067 8.7695 29 1 1.2606 1.0380 7.7514 30 1 -0.3632 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6581 -0.2244 -2.1390 34 1 1.6967 -1.7572 -1.2351 35 1 3.9160 0.3388 -1.2542 36 1 3.9333 -1.1896 -2.1672 37 1 5.1896 -1.3247 0.0136 38 1 3.8396 -2.4825 -0.0856 39 1 6.1244 -1.4160 1.8659 40 1 6.0684 0.2285 1.1873 41 1 6.0765 1.1751 3.4788 42 1 6.1325 -0.4691 4.1580 43 1 8.4784 2.2141 3.5745 44 1 11.6402 1.4867 4.1684 45 1 11.9683 1.0925 2.4639 46 1 11.0272 2.5461 2.8761 47 1 2.2620 0.9714 2.5603 48 1 0.5994 0.3476 2.4384 49 1 2.2912 -1.6244 3.6058 50 1 2.4136 -2.8000 6.7251 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271758823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:18 Heat of formation + Delta-G solvation = 107.309573 kcal Electronic energy + Delta-G solvation = -30269.726355 eV Core-core repulsion = 26336.051758 eV Total energy + Delta-G solvation = -3933.674596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.26028 -40.10803 -37.29556 -35.24096 -34.57503 -33.30072 -33.16970 -31.98000 -30.34422 -29.84570 -28.08242 -27.03664 -25.85677 -24.83006 -23.52067 -22.30037 -22.11252 -21.16097 -20.61882 -19.93677 -18.40220 -17.33530 -16.94024 -16.67291 -16.11568 -15.49449 -15.30490 -14.78521 -14.62752 -14.46967 -14.12786 -13.94738 -13.76283 -13.51746 -13.33120 -13.18674 -12.83454 -12.72947 -12.50225 -12.30473 -12.10187 -11.88516 -11.80317 -11.62631 -11.46152 -11.33700 -11.08296 -10.87861 -10.79019 -10.63099 -10.57521 -10.49875 -10.47898 -10.08343 -10.07611 -9.70056 -9.40075 -9.13159 -8.56970 -8.24381 -7.88909 -6.38459 -5.44173 -2.63380 1.52872 2.25237 2.55521 3.48045 3.52627 3.61070 3.64722 3.66856 4.18876 4.45927 4.63684 4.75271 4.82312 4.84801 4.91326 4.95006 4.96819 5.04475 5.14702 5.28962 5.41315 5.44150 5.46838 5.55990 5.66763 5.69297 5.78341 5.81959 5.87383 5.89896 5.93503 5.98032 6.00333 6.11100 6.14123 6.19466 6.25457 6.36298 6.39608 6.47076 6.52336 6.54653 6.70768 6.81198 7.04707 7.38517 7.95603 8.09749 8.49650 8.73893 9.09661 9.85342 10.48007 10.82498 11.79959 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007657 B = 0.004261 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.144466 B = 6569.251813 C = 9619.017870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.111 3.889 7 N -0.617 5.617 8 C 0.473 3.527 9 O -0.442 6.442 10 C -0.125 4.125 11 C -0.019 4.019 12 C -0.005 4.005 13 C -0.054 4.054 14 N -0.300 5.300 15 C 0.083 3.917 16 N -0.093 5.093 17 N -0.262 5.262 18 C 0.147 3.853 19 H 0.066 0.934 20 C 0.163 3.837 21 N -0.694 5.694 22 C -0.204 4.204 23 H 0.062 0.938 24 C -0.022 4.022 25 N -0.938 5.938 26 Si 0.897 3.103 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.286 1.286 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.190 0.810 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.032 0.968 48 H 0.018 0.982 49 H 0.380 0.620 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.787 8.669 -16.181 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.172 4.172 6 C -0.013 4.013 7 N -0.355 5.355 8 C 0.258 3.742 9 O -0.311 6.311 10 C -0.166 4.166 11 C -0.058 4.058 12 C -0.143 4.143 13 C -0.204 4.204 14 N -0.094 5.094 15 C -0.058 4.058 16 N -0.072 5.072 17 N -0.130 5.130 18 C 0.044 3.956 19 H 0.084 0.916 20 C 0.036 3.964 21 N -0.337 5.337 22 C -0.336 4.336 23 H 0.080 0.920 24 C -0.216 4.216 25 N -0.589 5.589 26 Si 0.730 3.270 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.212 1.212 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.207 0.793 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.049 0.951 48 H 0.035 0.965 49 H 0.214 0.786 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.290 7.768 -15.776 22.042 hybrid contribution -0.301 1.050 1.135 1.576 sum 12.988 8.819 -14.641 21.467 Atomic orbital electron populations 1.21849 0.94598 1.02092 1.01868 1.21462 0.95911 0.99855 0.94569 0.91090 1.21570 0.95080 1.00839 0.97549 1.21914 0.96384 1.01144 0.97753 1.21587 0.98120 0.96885 0.84701 1.47933 1.06090 1.63174 1.18307 1.20565 0.88571 0.81343 0.83727 1.91241 1.72559 1.41438 1.25829 1.21544 0.93386 1.03146 0.98550 1.19661 0.83777 1.03658 0.98720 1.22205 0.98329 0.89301 1.04495 1.23423 0.83890 1.02475 1.10633 1.47201 1.08245 1.08435 1.45488 1.22210 0.83147 0.95452 1.05002 1.78285 1.15855 0.93725 1.19330 1.75070 0.95604 1.25554 1.16735 1.21473 0.79306 0.99404 0.95444 0.91567 1.20857 0.95956 0.94534 0.85071 1.42185 1.71440 1.18810 1.01283 1.19125 1.29557 0.99995 0.84957 0.91961 1.24564 1.02853 0.97090 0.97083 1.69657 1.50253 1.11199 1.27767 0.86299 0.77532 0.77670 0.85457 1.22344 1.22219 1.21205 0.91581 0.93041 0.92609 0.92154 0.91884 0.91780 0.91343 0.90147 0.91971 0.89254 0.90396 0.89507 0.88545 0.79288 0.89245 0.88227 0.88443 0.95082 0.96459 0.78621 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.99 37.16 0.33 -1.49 16 2 C -0.10 -1.30 2.34 -90.49 -0.21 -1.51 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.21 5.17 -26.69 -0.14 -1.35 16 5 C -0.13 -1.35 6.08 -26.61 -0.16 -1.51 16 6 C 0.11 1.34 6.35 -3.71 -0.02 1.32 16 7 N -0.62 -9.94 2.97 -165.22 -0.49 -10.43 16 8 C 0.47 8.68 7.31 -10.98 -0.08 8.60 16 9 O -0.44 -10.30 9.70 5.55 0.05 -10.25 16 10 C -0.13 -1.86 4.03 -27.88 -0.11 -1.98 16 11 C -0.02 -0.29 5.08 -27.88 -0.14 -0.43 16 12 C -0.01 -0.08 6.50 -82.78 -0.54 -0.62 16 13 C -0.05 -0.59 11.54 -17.05 -0.20 -0.79 16 14 N -0.30 -3.18 3.74 -68.06 -0.25 -3.43 16 15 C 0.08 0.39 11.39 59.85 0.68 1.08 16 16 N -0.09 -1.34 13.16 60.35 0.79 -0.54 16 17 N -0.26 -4.27 12.40 33.29 0.41 -3.86 16 18 C 0.15 2.52 2.37 -67.60 -0.16 2.36 16 19 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 20 C 0.16 3.53 4.85 -4.04 -0.02 3.51 16 21 N -0.69 -18.68 3.19 -59.91 -0.19 -18.87 16 22 C -0.20 -6.08 9.74 -15.06 -0.15 -6.23 16 23 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 25 N -0.94 -30.18 13.06 55.49 0.72 -29.46 16 26 Si 0.90 23.93 29.55 -169.99 -5.02 18.91 16 27 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 28 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 H 0.07 0.91 6.37 -51.93 -0.33 0.58 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.88 5.93 -51.93 -0.31 0.57 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.34 7.73 -51.93 -0.40 0.94 16 40 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 41 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 42 H 0.10 1.81 8.10 -51.93 -0.42 1.39 16 43 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.03 0.73 6.37 -51.93 -0.33 0.40 16 48 H 0.02 0.38 6.14 -51.93 -0.32 0.06 16 49 H 0.38 11.02 7.21 -40.82 -0.29 10.72 16 50 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -38.09 392.06 -7.35 -45.44 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -8.28 Total: 6.37 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.01 Total: 0.21 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: 0.99 Total: -66.59 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.05 Total: -10.25 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.02 Total: 18.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.09 -7.35 -45.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271758823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.749 kcal (2) G-P(sol) polarization free energy of solvation -38.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds