Wall clock time and date at job start Tue Mar 31 2020 23:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.52740 * 2 1 4 4 C 1.53046 * 109.49725 * 239.92122 * 2 1 3 5 5 C 1.53033 * 109.53849 * 178.68529 * 4 2 1 6 6 C 1.53193 * 109.31647 * 61.36815 * 5 4 2 7 7 N 1.46925 * 108.76880 * 305.36192 * 6 5 4 8 8 C 1.34778 * 120.62893 * 233.57921 * 7 6 5 9 9 O 1.21287 * 119.99781 * 185.14247 * 8 7 6 10 10 C 1.50701 * 120.00212 * 5.15447 * 8 7 6 11 11 C 1.52998 * 109.47032 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46679 * 180.02562 * 11 10 8 13 13 C 1.35346 * 126.75281 * 125.00102 * 12 11 10 14 14 N 1.35319 * 106.17614 * 179.97438 * 13 12 11 15 15 C 1.46499 * 125.86942 * 179.97438 * 14 13 12 16 16 N 1.28711 * 108.26100 * 0.02562 * 14 13 12 17 17 N 1.28635 * 110.18135 * 359.71379 * 16 14 13 18 18 C 1.46927 * 118.74267 * 53.61306 * 7 6 5 19 19 H 1.09003 * 109.58878 * 66.31127 * 18 7 6 20 20 C 1.52996 * 109.59050 * 186.59924 * 18 7 6 21 21 N 1.46504 * 109.46922 * 286.90497 * 20 18 7 22 22 C 1.36933 * 119.99622 * 185.41292 * 21 20 18 23 23 H 1.07998 * 120.00369 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99856 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99967 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00148 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47220 * 90.00275 * 26 24 22 28 28 H 1.48503 * 109.47051 * 210.00129 * 26 24 22 29 29 H 1.48500 * 109.46994 * 330.00385 * 26 24 22 30 30 H 1.08994 * 109.46652 * 299.91354 * 1 2 3 31 31 H 1.08996 * 109.46777 * 59.91337 * 1 2 3 32 32 H 1.08999 * 109.47294 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.45888 * 58.66061 * 4 2 1 34 34 H 1.09001 * 109.44586 * 298.69988 * 4 2 1 35 35 H 1.09001 * 109.50140 * 301.41000 * 5 4 2 36 36 H 1.09001 * 109.49729 * 181.32098 * 5 4 2 37 37 H 1.08999 * 109.58801 * 185.58116 * 6 5 4 38 38 H 1.08991 * 109.70426 * 65.21682 * 6 5 4 39 39 H 1.08998 * 109.46848 * 299.99358 * 10 8 7 40 40 H 1.08996 * 109.47128 * 59.99125 * 10 8 7 41 41 H 1.08998 * 109.47105 * 299.99600 * 11 10 8 42 42 H 1.08996 * 109.47552 * 59.99784 * 11 10 8 43 43 H 1.07999 * 126.91717 * 0.03511 * 13 12 11 44 44 H 1.08997 * 109.47349 * 90.00029 * 15 14 13 45 45 H 1.09002 * 109.47054 * 210.00209 * 15 14 13 46 46 H 1.09001 * 109.47097 * 329.99948 * 15 14 13 47 47 H 1.09002 * 109.47225 * 46.90137 * 20 18 7 48 48 H 1.08996 * 109.47157 * 166.90574 * 20 18 7 49 49 H 0.97001 * 119.99930 * 5.40959 * 21 20 18 50 50 H 0.97003 * 120.00133 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6950 -1.2661 6 6 4.1053 -1.4269 -0.0309 7 7 3.5047 -0.8292 1.1694 8 6 4.2812 -0.3867 2.1782 9 8 3.7727 0.0186 3.2020 10 6 5.7813 -0.3951 2.0339 11 6 6.4196 0.1542 3.3113 12 6 7.9196 0.1463 3.1666 13 6 8.7538 1.2008 3.3221 14 7 10.0025 0.7297 3.0988 15 6 11.2386 1.5139 3.1554 16 7 9.9175 -0.5255 2.8271 17 7 8.6891 -0.9055 2.8650 18 6 2.0414 -0.7239 1.2496 19 1 1.6054 -1.7216 1.3004 20 6 1.6518 0.0703 2.4979 21 7 1.8734 -0.7530 3.6893 22 6 1.4905 -0.2923 4.9206 23 1 1.0248 0.6777 5.0135 24 6 1.6999 -1.0725 6.0494 25 7 2.2669 -2.2549 5.9362 26 14 1.1769 -0.4445 7.7292 27 1 -0.2208 -0.8655 8.0019 28 1 2.0752 -1.0067 8.7695 29 1 1.2606 1.0380 7.7514 30 1 -0.3632 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6581 -0.2244 -2.1390 34 1 1.6967 -1.7572 -1.2351 35 1 3.9160 0.3388 -1.2542 36 1 3.9333 -1.1896 -2.1672 37 1 5.1896 -1.3247 0.0136 38 1 3.8396 -2.4825 -0.0856 39 1 6.1244 -1.4160 1.8659 40 1 6.0684 0.2285 1.1873 41 1 6.0765 1.1751 3.4788 42 1 6.1325 -0.4691 4.1580 43 1 8.4784 2.2141 3.5745 44 1 11.6402 1.4867 4.1684 45 1 11.9683 1.0925 2.4639 46 1 11.0272 2.5461 2.8761 47 1 2.2620 0.9714 2.5603 48 1 0.5994 0.3476 2.4384 49 1 2.2912 -1.6244 3.6058 50 1 2.4136 -2.8000 6.7251 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271758823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:17 Heat of formation + Delta-G solvation = 80.767888 kcal Electronic energy + Delta-G solvation = -30270.877288 eV Core-core repulsion = 26336.051758 eV Total energy + Delta-G solvation = -3934.825530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.21052 -41.47223 -38.57135 -36.58602 -35.92419 -34.75775 -34.27362 -33.53981 -31.91384 -31.13813 -28.81429 -28.40652 -27.02669 -26.30712 -25.12275 -23.84219 -23.00099 -22.31247 -21.82711 -21.05602 -19.78822 -19.04403 -18.12865 -17.56915 -17.44884 -16.81729 -16.71341 -16.43395 -15.77138 -15.57811 -15.46634 -15.13325 -15.06543 -14.90867 -14.39276 -14.10885 -14.06380 -13.97998 -13.66531 -13.57172 -13.38791 -13.28222 -13.03032 -12.90271 -12.80674 -12.72080 -12.54183 -12.43933 -12.23644 -12.08911 -11.89125 -11.79667 -11.64159 -11.57020 -11.46640 -11.04898 -10.97460 -10.78793 -10.16125 -9.77750 -9.31523 -8.56383 -7.78357 -4.96242 0.64282 1.44555 1.47443 1.47763 1.55667 1.59115 2.05783 2.24937 2.65182 3.34983 3.54421 3.66925 3.78570 3.81911 3.91101 4.00321 4.08682 4.16560 4.17055 4.26331 4.34890 4.37068 4.40153 4.45368 4.48807 4.60916 4.64436 4.67607 4.69267 4.78430 4.85627 4.90141 4.91249 4.99978 5.05623 5.11706 5.15260 5.16734 5.27438 5.28561 5.31918 5.35999 5.45359 5.55346 5.59408 5.70865 5.92986 6.41944 6.75129 7.48194 7.50597 7.67733 8.31100 8.53467 9.46750 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007657 B = 0.004261 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.144466 B = 6569.251813 C = 9619.017870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.103 3.897 7 N -0.616 5.616 8 C 0.469 3.531 9 O -0.504 6.504 10 C -0.110 4.110 11 C -0.007 4.007 12 C -0.033 4.033 13 C -0.031 4.031 14 N -0.287 5.287 15 C 0.070 3.930 16 N -0.120 5.120 17 N -0.305 5.305 18 C 0.152 3.848 19 H 0.049 0.951 20 C 0.168 3.832 21 N -0.701 5.701 22 C -0.205 4.205 23 H 0.062 0.938 24 C -0.086 4.086 25 N -0.975 5.975 26 Si 0.964 3.036 27 H -0.288 1.288 28 H -0.301 1.301 29 H -0.275 1.275 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.231 0.769 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.132 0.868 47 H 0.017 0.983 48 H 0.018 0.982 49 H 0.365 0.635 50 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.921 10.825 -18.639 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.146 4.146 5 C -0.163 4.163 6 C -0.020 4.020 7 N -0.352 5.352 8 C 0.256 3.744 9 O -0.376 6.376 10 C -0.150 4.150 11 C -0.047 4.047 12 C -0.172 4.172 13 C -0.183 4.183 14 N -0.082 5.082 15 C -0.069 4.069 16 N -0.099 5.099 17 N -0.171 5.171 18 C 0.049 3.951 19 H 0.067 0.933 20 C 0.041 3.959 21 N -0.341 5.341 22 C -0.338 4.338 23 H 0.080 0.920 24 C -0.276 4.276 25 N -0.629 5.629 26 Si 0.795 3.205 27 H -0.216 1.216 28 H -0.228 1.228 29 H -0.200 1.200 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.247 0.753 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.150 0.850 47 H 0.035 0.965 48 H 0.036 0.964 49 H 0.197 0.803 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 14.443 9.939 -18.318 25.356 hybrid contribution -0.566 0.467 1.826 1.968 sum 13.877 10.406 -16.493 23.935 Atomic orbital electron populations 1.21834 0.94004 1.02137 1.02219 1.21403 0.96350 0.99449 0.93688 0.91215 1.21569 0.95607 1.00713 0.96730 1.21888 0.95717 1.01333 0.97409 1.21913 0.98973 0.97106 0.83959 1.48080 1.05633 1.62351 1.19157 1.21219 0.90113 0.79857 0.83223 1.91204 1.73849 1.44581 1.28012 1.21438 0.90527 1.03591 0.99468 1.19395 0.85264 1.02815 0.97208 1.22089 0.97749 0.90459 1.06902 1.23932 0.83334 1.03167 1.07865 1.47661 1.09789 1.07629 1.43082 1.22755 0.81219 0.96502 1.06434 1.78182 1.15128 0.95705 1.20868 1.74995 0.96613 1.27148 1.18336 1.21332 0.80270 0.98177 0.95371 0.93322 1.20888 0.95484 0.94087 0.85408 1.42291 1.71089 1.18645 1.02093 1.19479 1.28222 0.99642 0.86427 0.91985 1.25326 1.04024 0.97561 1.00726 1.69840 1.52333 1.12568 1.28172 0.85240 0.77023 0.77531 0.80713 1.21565 1.22778 1.20013 0.93645 0.90214 0.92738 0.89559 0.91856 0.91395 0.88314 0.88701 0.91796 0.89514 0.87216 0.88984 0.93292 0.75269 0.87716 0.87260 0.84960 0.96526 0.96412 0.80345 0.94923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.99 71.98 0.65 -2.75 16 2 C -0.09 -2.22 2.34 -10.71 -0.03 -2.25 16 3 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.11 -1.98 5.17 30.62 0.16 -1.82 16 5 C -0.13 -2.07 6.08 30.67 0.19 -1.89 16 6 C 0.10 2.30 6.35 86.36 0.55 2.85 16 7 N -0.62 -19.88 2.97 -795.02 -2.36 -22.25 16 8 C 0.47 17.79 7.31 87.66 0.64 18.43 16 9 O -0.50 -24.78 9.70 -3.05 -0.03 -24.81 16 10 C -0.11 -3.30 4.03 29.85 0.12 -3.18 16 11 C -0.01 -0.23 5.08 29.85 0.15 -0.08 16 12 C -0.03 -0.95 6.50 41.60 0.27 -0.68 16 13 C -0.03 -0.62 11.54 83.49 0.96 0.34 16 14 N -0.29 -5.48 3.74 -369.24 -1.38 -6.86 16 15 C 0.07 0.43 11.39 127.77 1.46 1.88 16 16 N -0.12 -3.39 13.16 37.02 0.49 -2.90 16 17 N -0.30 -10.07 12.40 -48.60 -0.60 -10.67 16 18 C 0.15 5.29 2.37 44.97 0.11 5.40 16 19 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 20 C 0.17 7.54 4.85 86.38 0.42 7.96 16 21 N -0.70 -39.59 3.19 -343.46 -1.10 -40.69 16 22 C -0.20 -12.65 9.74 84.03 0.82 -11.84 16 23 H 0.06 3.75 7.83 -2.91 -0.02 3.72 16 24 C -0.09 -5.42 5.50 84.86 0.47 -4.95 16 25 N -0.98 -65.55 13.06 21.65 0.28 -65.27 16 26 Si 0.96 50.78 29.55 68.60 2.03 52.80 16 27 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 28 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 29 H -0.27 -13.79 7.11 99.48 0.71 -13.08 16 30 H 0.04 1.24 6.37 -2.39 -0.02 1.23 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.87 5.93 -2.39 -0.01 1.86 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 2.67 7.73 -2.39 -0.02 2.65 16 40 H 0.11 2.58 7.90 -2.39 -0.02 2.56 16 41 H 0.09 2.78 8.08 -2.39 -0.02 2.76 16 42 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 43 H 0.23 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.13 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.02 0.82 6.37 -2.39 -0.02 0.81 16 48 H 0.02 0.81 6.14 -2.39 -0.01 0.79 16 49 H 0.37 22.43 7.21 -92.71 -0.67 21.76 16 50 H 0.24 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -89.34 392.06 4.52 -84.82 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.27 Total: 28.38 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 6.93 Total: 7.44 kcal Atomic # 7 Polarization: -143.96 SS G_CDS: -4.67 Total: -148.63 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.03 Total: -24.81 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.03 Total: 52.80 kcal Total: -89.34 4.52 -84.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271758823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.591 kcal (2) G-P(sol) polarization free energy of solvation -89.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds