Wall clock time and date at job start Tue Mar 31 2020 23:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.49657 * 2 1 4 4 C 1.53033 * 109.52922 * 239.91451 * 2 1 3 5 5 C 1.53045 * 109.53818 * 301.39960 * 4 2 1 6 6 C 1.53192 * 109.30870 * 298.63365 * 5 4 2 7 7 N 1.46924 * 108.77949 * 54.63410 * 6 5 4 8 8 C 1.34777 * 120.62905 * 126.38698 * 7 6 5 9 9 O 1.21287 * 119.99736 * 185.13073 * 8 7 6 10 10 C 1.50697 * 120.00326 * 5.13884 * 8 7 6 11 11 C 1.52996 * 109.47152 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47316 * 179.97438 * 11 10 8 13 13 N 1.33243 * 125.52564 * 89.98891 * 12 11 10 14 14 C 1.30837 * 109.82854 * 180.02562 * 13 12 11 15 15 N 1.34428 * 108.07407 * 0.02562 * 14 13 12 16 16 H 0.97002 * 126.82053 * 179.97438 * 15 14 13 17 17 N 1.30712 * 125.52667 * 269.69605 * 12 11 10 18 18 C 1.46925 * 118.73884 * 306.39032 * 7 6 5 19 19 H 1.08999 * 109.58391 * 293.82236 * 18 7 6 20 20 C 1.52998 * 109.70557 * 173.46004 * 18 7 6 21 21 C 1.53002 * 109.47055 * 179.34423 * 20 18 7 22 22 N 1.46506 * 109.46847 * 185.27741 * 21 20 18 23 23 C 1.36938 * 119.99486 * 180.02562 * 22 21 20 24 24 H 1.07992 * 120.00156 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99560 * 180.02562 * 23 22 21 26 26 N 1.31621 * 120.00154 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00085 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47261 * 59.99802 * 27 25 23 29 29 H 1.48496 * 109.47528 * 179.97438 * 27 25 23 30 30 H 1.48508 * 109.47278 * 300.00084 * 27 25 23 31 31 H 1.08997 * 109.47196 * 299.94170 * 1 2 3 32 32 H 1.08994 * 109.46818 * 59.94400 * 1 2 3 33 33 H 1.09005 * 109.46847 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46211 * 61.41499 * 4 2 1 35 35 H 1.08997 * 109.46448 * 181.39290 * 4 2 1 36 36 H 1.08994 * 109.49585 * 58.58430 * 5 4 2 37 37 H 1.09000 * 109.49944 * 178.68560 * 5 4 2 38 38 H 1.09006 * 109.58585 * 174.42344 * 6 5 4 39 39 H 1.09001 * 109.58606 * 294.69807 * 6 5 4 40 40 H 1.09008 * 109.46670 * 299.99352 * 10 8 7 41 41 H 1.08997 * 109.47394 * 59.99425 * 10 8 7 42 42 H 1.09002 * 109.47183 * 299.99350 * 11 10 8 43 43 H 1.08997 * 109.47477 * 59.99432 * 11 10 8 44 44 H 1.07991 * 125.96162 * 179.97438 * 14 13 12 45 45 H 1.08997 * 109.47404 * 299.35253 * 20 18 7 46 46 H 1.09005 * 109.46398 * 59.34996 * 20 18 7 47 47 H 1.08993 * 109.47569 * 305.27957 * 21 20 18 48 48 H 1.09001 * 109.46761 * 65.27948 * 21 20 18 49 49 H 0.96998 * 120.00210 * 0.02562 * 22 21 20 50 50 H 0.96998 * 120.00015 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7230 -1.2480 5 6 1.5044 -2.1560 -1.2656 6 6 2.0154 -2.9037 -0.0301 7 7 1.6522 -2.1379 1.1700 8 6 0.9750 -2.7219 2.1784 9 8 0.5998 -2.0578 3.1215 10 6 0.6841 -4.1998 2.1343 11 6 -0.0911 -4.6047 3.3896 12 6 -0.3826 -6.0826 3.3453 13 7 0.4022 -7.0416 3.8349 14 6 -0.1462 -8.2117 3.6300 15 7 -1.3141 -8.0190 2.9929 16 1 -1.9413 -8.7025 2.7092 17 7 -1.4489 -6.6312 2.8250 18 6 2.0413 -0.7233 1.2500 19 1 3.1274 -0.6453 1.2987 20 6 1.4249 -0.0885 2.4981 21 6 1.8466 1.3797 2.5847 22 7 1.3617 1.9536 3.8425 23 6 1.6202 3.2648 4.1413 24 1 2.1818 3.8756 3.4500 25 6 1.1612 3.8084 5.3332 26 7 0.4772 3.0639 6.1758 27 14 1.5143 5.5967 5.7412 28 1 0.9205 6.4694 4.6967 29 1 0.9201 5.9302 7.0606 30 1 2.9828 5.8127 5.7904 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5147 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6995 -0.1961 -2.1388 35 1 3.1312 -0.7441 -1.2345 36 1 0.4147 -2.1362 -1.2540 37 1 1.8501 -2.6631 -2.1664 38 1 1.5573 -3.8918 0.0145 39 1 3.0991 -3.0058 -0.0870 40 1 0.0875 -4.4264 1.2505 41 1 1.6219 -4.7536 2.0914 42 1 0.5050 -4.3781 4.2737 43 1 -1.0289 -4.0509 3.4320 44 1 0.2675 -9.1657 3.9212 45 1 0.3383 -0.1516 2.4390 46 1 1.7720 -0.6191 3.3847 47 1 2.9338 1.4482 2.5494 48 1 1.4205 1.9302 1.7460 49 1 0.8576 1.4049 4.4635 50 1 0.1568 3.4437 7.0089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316674733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:28 Heat of formation + Delta-G solvation = 68.024050 kcal Electronic energy + Delta-G solvation = -29661.965446 eV Core-core repulsion = 25726.587302 eV Total energy + Delta-G solvation = -3935.378144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 11.63 seconds Orbital eigenvalues (eV) -42.40774 -40.72515 -37.86667 -35.30310 -34.39639 -33.55013 -32.72970 -32.21688 -30.82607 -30.70734 -28.34940 -26.71845 -25.94845 -24.33208 -23.71204 -23.04834 -22.17970 -20.71978 -20.54819 -19.73482 -18.66462 -18.30556 -17.12903 -16.54543 -16.11815 -15.80797 -15.59824 -15.38232 -15.18049 -14.52497 -14.40459 -14.15761 -13.90944 -13.65096 -13.23826 -12.99995 -12.90541 -12.76078 -12.73194 -12.44071 -12.37317 -12.26561 -11.75282 -11.51119 -11.33025 -11.19185 -11.00439 -10.95277 -10.77200 -10.71022 -10.46605 -10.40884 -10.34108 -10.32126 -10.04530 -9.98984 -9.90319 -9.52706 -8.70887 -8.67414 -8.36000 -6.72447 -5.59443 -2.87224 1.27514 2.32586 2.55096 2.77540 3.04492 3.53674 3.57092 3.58977 3.81456 4.32592 4.52853 4.59118 4.69466 4.73841 4.77556 4.83206 4.94223 5.00285 5.04525 5.19064 5.23008 5.38949 5.41363 5.61940 5.65870 5.71742 5.72610 5.77699 5.78940 5.83272 5.86207 5.90164 5.93252 6.11467 6.14479 6.18001 6.19862 6.34590 6.40821 6.50625 6.57032 6.66914 6.68133 6.79031 7.18296 7.31609 7.54603 7.76927 7.83243 8.37398 8.59763 9.69988 10.33007 10.67869 11.63456 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011006 B = 0.002812 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.527862 B = 9953.884821 C =12039.558604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.086 0.914 4 C -0.115 4.115 5 C -0.137 4.137 6 C 0.108 3.892 7 N -0.608 5.608 8 C 0.511 3.489 9 O -0.511 6.511 10 C -0.131 4.131 11 C -0.014 4.014 12 C 0.235 3.765 13 N -0.539 5.539 14 C 0.259 3.741 15 N -0.488 5.488 16 H 0.441 0.559 17 N -0.313 5.313 18 C 0.157 3.843 19 H 0.069 0.931 20 C -0.115 4.115 21 C 0.147 3.853 22 N -0.730 5.730 23 C -0.235 4.235 24 H 0.068 0.932 25 C -0.017 4.017 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.222 0.778 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.010 0.990 48 H 0.015 0.985 49 H 0.386 0.614 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 -26.127 -16.206 30.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.152 4.152 5 C -0.175 4.175 6 C -0.015 4.015 7 N -0.342 5.342 8 C 0.299 3.701 9 O -0.386 6.386 10 C -0.173 4.173 11 C -0.054 4.054 12 C -0.047 4.047 13 N -0.267 5.267 14 C -0.040 4.040 15 N -0.206 5.206 16 H 0.286 0.714 17 N -0.142 5.142 18 C 0.054 3.946 19 H 0.087 0.913 20 C -0.152 4.152 21 C 0.019 3.981 22 N -0.374 5.374 23 C -0.367 4.367 24 H 0.086 0.914 25 C -0.213 4.213 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.238 0.762 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.028 0.972 48 H 0.033 0.967 49 H 0.219 0.781 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.019 -25.102 -15.836 29.680 hybrid contribution -0.235 -0.095 0.152 0.296 sum -0.216 -25.197 -15.684 29.680 Atomic orbital electron populations 1.21869 0.94773 1.01524 1.02090 1.21563 0.96913 0.99977 0.93950 0.89539 1.21558 1.00361 0.95197 0.98109 1.21962 1.01830 0.96538 0.97218 1.21696 1.00258 0.94913 0.84644 1.48092 1.56762 1.11465 1.17905 1.20436 0.77996 0.89317 0.82395 1.90892 1.50102 1.63691 1.33959 1.21627 1.02239 0.94078 0.99344 1.19709 1.02734 0.83654 0.99305 1.24375 0.88185 0.97782 0.94405 1.70477 1.32582 0.97709 1.25979 1.26143 0.85098 0.99558 0.93196 1.48166 1.19206 1.07048 1.46193 0.71391 1.78067 1.23217 0.86905 1.26050 1.21336 0.98363 0.78703 0.96202 0.91290 1.22284 1.01923 0.95130 0.95884 1.20808 0.95767 0.91678 0.89846 1.42349 1.65938 1.10264 1.18883 1.19196 1.28287 0.87559 1.01662 0.91448 1.24739 1.01230 0.97969 0.97328 1.69673 1.42111 1.35237 1.11118 0.86289 0.77635 0.85195 0.77202 1.21419 1.21765 1.21400 0.91355 0.93328 0.92957 0.91824 0.91927 0.91049 0.91151 0.90097 0.91445 0.89127 0.88707 0.87842 0.88406 0.76161 0.90316 0.89647 0.97231 0.96742 0.78065 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.21 37.16 0.30 -1.63 16 2 C -0.10 -1.31 2.32 -90.50 -0.21 -1.52 16 3 H 0.09 1.17 6.90 -51.93 -0.36 0.81 16 4 C -0.11 -1.08 5.43 -26.69 -0.14 -1.22 16 5 C -0.14 -1.09 5.74 -26.61 -0.15 -1.25 16 6 C 0.11 0.90 6.33 -3.71 -0.02 0.88 16 7 N -0.61 -7.33 2.41 -165.22 -0.40 -7.73 16 8 C 0.51 6.93 7.61 -10.99 -0.08 6.85 16 9 O -0.51 -9.15 11.40 5.55 0.06 -9.09 16 10 C -0.13 -1.35 4.08 -27.89 -0.11 -1.46 16 11 C -0.01 -0.16 5.13 -27.88 -0.14 -0.30 16 12 C 0.24 2.70 7.39 -156.85 -1.16 1.54 16 13 N -0.54 -5.78 11.19 -11.98 -0.13 -5.91 16 14 C 0.26 1.65 13.13 -90.65 -1.19 0.46 16 15 N -0.49 -3.22 7.45 29.53 0.22 -3.00 16 16 H 0.44 1.18 8.96 -182.33 -1.63 -0.45 16 17 N -0.31 -3.43 12.80 32.42 0.41 -3.02 16 18 C 0.16 2.22 2.70 -67.60 -0.18 2.04 16 19 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 20 C -0.11 -2.16 2.79 -26.73 -0.07 -2.23 16 21 C 0.15 3.24 5.79 -4.04 -0.02 3.22 16 22 N -0.73 -20.32 5.60 -59.91 -0.34 -20.65 16 23 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 24 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 25 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 26 N -0.93 -29.99 13.06 55.49 0.72 -29.27 16 27 Si 0.91 23.52 29.55 -169.99 -5.02 18.49 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 30 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 31 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.67 5.97 -51.93 -0.31 0.36 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.62 6.34 -51.93 -0.33 0.30 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.54 5.96 -51.93 -0.31 0.23 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.80 7.48 -51.92 -0.39 0.42 16 41 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 42 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 43 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 44 H 0.22 0.25 8.06 -52.49 -0.42 -0.18 16 45 H 0.08 1.61 5.23 -51.93 -0.27 1.33 16 46 H 0.09 1.82 6.40 -51.93 -0.33 1.49 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.01 0.32 6.89 -51.93 -0.36 -0.04 16 49 H 0.39 11.48 7.67 -40.82 -0.31 11.17 16 50 H 0.25 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -38.28 386.55 -11.21 -49.49 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -9.12 Total: 7.28 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.44 Total: -2.42 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: 0.49 Total: -69.57 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.06 Total: -9.09 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.28 -11.21 -49.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316674733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.514 kcal (2) G-P(sol) polarization free energy of solvation -38.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.63 seconds