Wall clock time and date at job start Tue Mar 31 2020 23:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.49657 * 2 1 4 4 C 1.53033 * 109.52922 * 239.91451 * 2 1 3 5 5 C 1.53045 * 109.53818 * 301.39960 * 4 2 1 6 6 C 1.53192 * 109.30870 * 298.63365 * 5 4 2 7 7 N 1.46924 * 108.77949 * 54.63410 * 6 5 4 8 8 C 1.34777 * 120.62905 * 126.38698 * 7 6 5 9 9 O 1.21287 * 119.99736 * 185.13073 * 8 7 6 10 10 C 1.50697 * 120.00326 * 5.13884 * 8 7 6 11 11 C 1.52996 * 109.47152 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47316 * 179.97438 * 11 10 8 13 13 N 1.33243 * 125.52564 * 89.98891 * 12 11 10 14 14 C 1.30837 * 109.82854 * 180.02562 * 13 12 11 15 15 N 1.34428 * 108.07407 * 0.02562 * 14 13 12 16 16 H 0.97002 * 126.82053 * 179.97438 * 15 14 13 17 17 N 1.30712 * 125.52667 * 269.69605 * 12 11 10 18 18 C 1.46925 * 118.73884 * 306.39032 * 7 6 5 19 19 H 1.08999 * 109.58391 * 293.82236 * 18 7 6 20 20 C 1.52998 * 109.70557 * 173.46004 * 18 7 6 21 21 C 1.53002 * 109.47055 * 179.34423 * 20 18 7 22 22 N 1.46506 * 109.46847 * 185.27741 * 21 20 18 23 23 C 1.36938 * 119.99486 * 180.02562 * 22 21 20 24 24 H 1.07992 * 120.00156 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99560 * 180.02562 * 23 22 21 26 26 N 1.31621 * 120.00154 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00085 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47261 * 59.99802 * 27 25 23 29 29 H 1.48496 * 109.47528 * 179.97438 * 27 25 23 30 30 H 1.48508 * 109.47278 * 300.00084 * 27 25 23 31 31 H 1.08997 * 109.47196 * 299.94170 * 1 2 3 32 32 H 1.08994 * 109.46818 * 59.94400 * 1 2 3 33 33 H 1.09005 * 109.46847 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46211 * 61.41499 * 4 2 1 35 35 H 1.08997 * 109.46448 * 181.39290 * 4 2 1 36 36 H 1.08994 * 109.49585 * 58.58430 * 5 4 2 37 37 H 1.09000 * 109.49944 * 178.68560 * 5 4 2 38 38 H 1.09006 * 109.58585 * 174.42344 * 6 5 4 39 39 H 1.09001 * 109.58606 * 294.69807 * 6 5 4 40 40 H 1.09008 * 109.46670 * 299.99352 * 10 8 7 41 41 H 1.08997 * 109.47394 * 59.99425 * 10 8 7 42 42 H 1.09002 * 109.47183 * 299.99350 * 11 10 8 43 43 H 1.08997 * 109.47477 * 59.99432 * 11 10 8 44 44 H 1.07991 * 125.96162 * 179.97438 * 14 13 12 45 45 H 1.08997 * 109.47404 * 299.35253 * 20 18 7 46 46 H 1.09005 * 109.46398 * 59.34996 * 20 18 7 47 47 H 1.08993 * 109.47569 * 305.27957 * 21 20 18 48 48 H 1.09001 * 109.46761 * 65.27948 * 21 20 18 49 49 H 0.96998 * 120.00210 * 0.02562 * 22 21 20 50 50 H 0.96998 * 120.00015 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7230 -1.2480 5 6 1.5044 -2.1560 -1.2656 6 6 2.0154 -2.9037 -0.0301 7 7 1.6522 -2.1379 1.1700 8 6 0.9750 -2.7219 2.1784 9 8 0.5998 -2.0578 3.1215 10 6 0.6841 -4.1998 2.1343 11 6 -0.0911 -4.6047 3.3896 12 6 -0.3826 -6.0826 3.3453 13 7 0.4022 -7.0416 3.8349 14 6 -0.1462 -8.2117 3.6300 15 7 -1.3141 -8.0190 2.9929 16 1 -1.9413 -8.7025 2.7092 17 7 -1.4489 -6.6312 2.8250 18 6 2.0413 -0.7233 1.2500 19 1 3.1274 -0.6453 1.2987 20 6 1.4249 -0.0885 2.4981 21 6 1.8466 1.3797 2.5847 22 7 1.3617 1.9536 3.8425 23 6 1.6202 3.2648 4.1413 24 1 2.1818 3.8756 3.4500 25 6 1.1612 3.8084 5.3332 26 7 0.4772 3.0639 6.1758 27 14 1.5143 5.5967 5.7412 28 1 0.9205 6.4694 4.6967 29 1 0.9201 5.9302 7.0606 30 1 2.9828 5.8127 5.7904 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5147 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6995 -0.1961 -2.1388 35 1 3.1312 -0.7441 -1.2345 36 1 0.4147 -2.1362 -1.2540 37 1 1.8501 -2.6631 -2.1664 38 1 1.5573 -3.8918 0.0145 39 1 3.0991 -3.0058 -0.0870 40 1 0.0875 -4.4264 1.2505 41 1 1.6219 -4.7536 2.0914 42 1 0.5050 -4.3781 4.2737 43 1 -1.0289 -4.0509 3.4320 44 1 0.2675 -9.1657 3.9212 45 1 0.3383 -0.1516 2.4390 46 1 1.7720 -0.6191 3.3847 47 1 2.9338 1.4482 2.5494 48 1 1.4205 1.9302 1.7460 49 1 0.8576 1.4049 4.4635 50 1 0.1568 3.4437 7.0089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316674733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:27 Heat of formation + Delta-G solvation = 42.195412 kcal Electronic energy + Delta-G solvation = -29663.085460 eV Core-core repulsion = 25726.587302 eV Total energy + Delta-G solvation = -3936.498158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = -1.37 seconds Orbital eigenvalues (eV) -43.06743 -41.79038 -38.92919 -36.98899 -35.48837 -34.69914 -34.09715 -32.96457 -32.52132 -31.53817 -29.83744 -27.91401 -26.95493 -25.80081 -24.94500 -23.83102 -23.55449 -22.08552 -21.37385 -20.72545 -19.36899 -19.26449 -19.07552 -17.71811 -17.18894 -16.84024 -16.58710 -16.37650 -16.19966 -16.08175 -15.42552 -15.31393 -15.13795 -14.96628 -14.71135 -14.45426 -14.26265 -13.80836 -13.77258 -13.48707 -13.26776 -13.09243 -13.04885 -12.88680 -12.80125 -12.49110 -12.38529 -12.34205 -12.15380 -12.10760 -11.84803 -11.73703 -11.64840 -11.29882 -11.18804 -11.08342 -11.04603 -10.88409 -10.69555 -9.95068 -9.42229 -8.99718 -7.93432 -5.24062 0.65622 1.44428 1.49969 1.56120 1.72179 1.77999 1.87171 2.11137 2.56388 3.15438 3.38292 3.55072 3.69652 3.80334 3.83284 3.94654 4.06689 4.10650 4.14274 4.18476 4.27236 4.33256 4.42114 4.52857 4.54865 4.61734 4.65147 4.74341 4.80567 4.83678 4.86856 4.91982 4.95350 4.98892 5.01721 5.13891 5.24594 5.26132 5.28000 5.34517 5.37103 5.44313 5.47834 5.55719 5.59653 5.81634 6.27479 6.28830 6.53989 7.12428 7.31342 7.32761 8.09977 8.34240 9.30572 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011006 B = 0.002812 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.527862 B = 9953.884821 C =12039.558604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.074 0.926 4 C -0.109 4.109 5 C -0.133 4.133 6 C 0.101 3.899 7 N -0.604 5.604 8 C 0.503 3.497 9 O -0.567 6.567 10 C -0.112 4.112 11 C -0.010 4.010 12 C 0.224 3.776 13 N -0.580 5.580 14 C 0.278 3.722 15 N -0.475 5.475 16 H 0.458 0.542 17 N -0.344 5.344 18 C 0.161 3.839 19 H 0.076 0.924 20 C -0.092 4.092 21 C 0.148 3.852 22 N -0.748 5.748 23 C -0.248 4.248 24 H 0.078 0.922 25 C -0.082 4.082 26 N -0.973 5.973 27 Si 0.981 3.019 28 H -0.275 1.275 29 H -0.294 1.294 30 H -0.275 1.275 31 H 0.028 0.972 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.274 0.726 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.015 0.985 48 H 0.022 0.978 49 H 0.370 0.630 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -28.093 -19.052 33.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.171 4.171 6 C -0.020 4.020 7 N -0.337 5.337 8 C 0.293 3.707 9 O -0.446 6.446 10 C -0.153 4.153 11 C -0.051 4.051 12 C -0.059 4.059 13 N -0.309 5.309 14 C -0.020 4.020 15 N -0.195 5.195 16 H 0.307 0.693 17 N -0.174 5.174 18 C 0.058 3.942 19 H 0.094 0.906 20 C -0.130 4.130 21 C 0.021 3.979 22 N -0.390 5.390 23 C -0.380 4.380 24 H 0.095 0.905 25 C -0.274 4.274 26 N -0.624 5.624 27 Si 0.809 3.191 28 H -0.201 1.201 29 H -0.220 1.220 30 H -0.201 1.201 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.289 0.711 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.040 0.960 49 H 0.201 0.799 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.335 -27.115 -18.777 33.008 hybrid contribution -0.660 0.387 1.012 1.269 sum 0.675 -26.728 -17.765 32.100 Atomic orbital electron populations 1.21797 0.95595 1.01439 1.00817 1.21530 0.96105 0.99658 0.94865 0.90756 1.21534 1.01049 0.95826 0.96241 1.21966 1.01346 0.95647 0.98131 1.22063 1.01707 0.95395 0.82845 1.48173 1.55898 1.10668 1.18933 1.21073 0.77265 0.90579 0.81813 1.90882 1.52450 1.65132 1.36121 1.21508 1.03161 0.91336 0.99329 1.19512 1.01622 0.84598 0.99330 1.24129 0.88833 0.97528 0.95362 1.70439 1.33908 0.98973 1.27569 1.27082 0.84055 1.00078 0.90813 1.48087 1.19797 1.05917 1.45685 0.69273 1.77958 1.23343 0.89197 1.26928 1.21133 0.98272 0.80228 0.94605 0.90568 1.21955 1.00642 0.92970 0.97396 1.20974 0.95626 0.93627 0.87626 1.42632 1.66022 1.09910 1.20410 1.19668 1.27845 0.88533 1.01952 0.90453 1.25720 1.01439 1.02956 0.97291 1.69874 1.43615 1.37411 1.11510 0.85100 0.77916 0.79292 0.76774 1.20103 1.22014 1.20052 0.95313 0.91767 0.92488 0.90636 0.90732 0.91814 0.87986 0.87839 0.89611 0.87024 0.86774 0.89947 0.90329 0.71061 0.92519 0.92661 0.96746 0.96030 0.79937 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.21 71.98 0.59 -3.14 16 2 C -0.10 -2.48 2.32 -10.72 -0.02 -2.50 16 3 H 0.07 1.97 6.90 -2.39 -0.02 1.96 16 4 C -0.11 -1.71 5.43 30.62 0.17 -1.54 16 5 C -0.13 -1.61 5.74 30.67 0.18 -1.44 16 6 C 0.10 1.36 6.33 86.36 0.55 1.90 16 7 N -0.60 -14.13 2.41 -795.01 -1.92 -16.05 16 8 C 0.50 14.09 7.61 87.66 0.67 14.76 16 9 O -0.57 -22.13 11.40 -3.05 -0.03 -22.16 16 10 C -0.11 -2.27 4.08 29.85 0.12 -2.14 16 11 C -0.01 -0.25 5.13 29.85 0.15 -0.10 16 12 C 0.22 5.15 7.39 138.63 1.03 6.18 16 13 N -0.58 -11.79 11.19 -191.80 -2.15 -13.94 16 14 C 0.28 2.80 13.13 180.36 2.37 5.17 16 15 N -0.48 -5.25 7.45 -60.49 -0.45 -5.70 16 16 H 0.46 1.30 8.96 -213.09 -1.91 -0.61 16 17 N -0.34 -7.31 12.80 -51.33 -0.66 -7.97 16 18 C 0.16 4.60 2.70 44.98 0.12 4.72 16 19 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 20 C -0.09 -3.69 2.79 30.59 0.09 -3.60 16 21 C 0.15 6.82 5.79 86.38 0.50 7.33 16 22 N -0.75 -43.67 5.60 -343.45 -1.92 -45.59 16 23 C -0.25 -15.22 9.99 84.03 0.84 -14.38 16 24 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 25 C -0.08 -5.12 5.50 84.86 0.47 -4.66 16 26 N -0.97 -64.91 13.06 21.65 0.28 -64.62 16 27 Si 0.98 49.12 29.55 68.60 2.03 51.15 16 28 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 29 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 30 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 31 H 0.03 0.98 6.33 -2.39 -0.02 0.96 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.45 5.97 -2.38 -0.01 1.43 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 0.91 6.34 -2.39 -0.02 0.89 16 37 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 0.97 5.96 -2.38 -0.01 0.95 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 1.79 7.48 -2.38 -0.02 1.77 16 41 H 0.11 1.88 8.11 -2.39 -0.02 1.87 16 42 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16 43 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 44 H 0.27 -0.60 8.06 -2.92 -0.02 -0.63 16 45 H 0.06 2.53 5.23 -2.39 -0.01 2.51 16 46 H 0.05 2.56 6.40 -2.38 -0.02 2.54 16 47 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.02 0.98 6.89 -2.39 -0.02 0.96 16 49 H 0.37 23.53 7.67 -92.71 -0.71 22.82 16 50 H 0.25 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -88.94 386.55 1.33 -87.61 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -1.65 Total: 30.74 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 7.80 Total: 6.55 kcal Atomic # 7 Polarization: -147.06 SS G_CDS: -6.81 Total: -153.88 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.03 Total: -22.16 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.03 Total: 51.15 kcal Total: -88.94 1.33 -87.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316674733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.802 kcal (2) G-P(sol) polarization free energy of solvation -88.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.36 seconds