Wall clock time and date at job start Tue Mar 31 2020 23:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.49526 * 2 1 4 4 C 1.53041 * 109.52342 * 239.92356 * 2 1 3 5 5 C 1.53043 * 109.53644 * 178.67075 * 4 2 1 6 6 C 1.52757 * 109.38340 * 61.23591 * 5 4 2 7 7 N 1.46928 * 109.01189 * 305.58497 * 6 5 4 8 8 C 1.34769 * 120.63406 * 233.58864 * 7 6 5 9 9 O 1.21285 * 120.00169 * 175.94658 * 8 7 6 10 10 C 1.50702 * 120.00155 * 355.66540 * 8 7 6 11 11 C 1.52992 * 109.47284 * 180.27673 * 10 8 7 12 12 C 1.50702 * 109.47285 * 179.97438 * 11 10 8 13 13 N 1.33235 * 125.53224 * 269.69652 * 12 11 10 14 14 C 1.30831 * 109.83383 * 179.85524 * 13 12 11 15 15 N 1.34431 * 108.07193 * 0.39824 * 14 13 12 16 16 H 0.97007 * 126.82297 * 179.78580 * 15 14 13 17 17 N 1.30716 * 125.52371 * 89.99999 * 12 11 10 18 18 C 1.46934 * 118.73331 * 53.31295 * 7 6 5 19 19 H 1.09000 * 109.58438 * 66.42689 * 18 7 6 20 20 C 1.52995 * 109.58314 * 186.85374 * 18 7 6 21 21 C 1.53006 * 109.47131 * 67.79825 * 20 18 7 22 22 N 1.46496 * 109.47224 * 186.38777 * 21 20 18 23 23 C 1.36936 * 119.99942 * 180.02562 * 22 21 20 24 24 H 1.07994 * 120.00205 * 359.97438 * 23 22 21 25 25 C 1.38820 * 119.99653 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00191 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99676 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46948 * 60.00042 * 27 25 23 29 29 H 1.48497 * 109.46981 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47047 * 300.00547 * 27 25 23 31 31 H 1.09000 * 109.47015 * 299.93753 * 1 2 3 32 32 H 1.09002 * 109.46746 * 59.93032 * 1 2 3 33 33 H 1.08994 * 109.47046 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.45919 * 298.68345 * 4 2 1 35 35 H 1.08993 * 109.46064 * 58.64775 * 4 2 1 36 36 H 1.08995 * 109.49437 * 181.31451 * 5 4 2 37 37 H 1.09002 * 109.49432 * 301.40748 * 5 4 2 38 38 H 1.09004 * 109.50604 * 185.70468 * 6 5 4 39 39 H 1.09001 * 109.43496 * 65.43061 * 6 5 4 40 40 H 1.09007 * 109.47032 * 300.27593 * 10 8 7 41 41 H 1.09000 * 109.46763 * 60.27627 * 10 8 7 42 42 H 1.08998 * 109.47601 * 299.99918 * 11 10 8 43 43 H 1.09000 * 109.47258 * 60.00258 * 11 10 8 44 44 H 1.07992 * 125.96673 * 180.19733 * 14 13 12 45 45 H 1.08998 * 109.46946 * 187.79417 * 20 18 7 46 46 H 1.09001 * 109.47588 * 307.79873 * 20 18 7 47 47 H 1.08996 * 109.47367 * 306.39124 * 21 20 18 48 48 H 1.09000 * 109.46842 * 66.38821 * 21 20 18 49 49 H 0.97006 * 119.99785 * 359.97438 * 22 21 20 50 50 H 0.97001 * 119.99929 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0415 -0.7229 -1.2482 5 6 3.5715 -0.6942 -1.2654 6 6 4.1061 -1.4204 -0.0324 7 7 3.5047 -0.8281 1.1702 8 6 4.2807 -0.3842 2.1786 9 8 3.7770 0.1692 3.1332 10 6 5.7738 -0.5809 2.1233 11 6 6.4124 0.0038 3.3847 12 6 7.9054 -0.1935 3.3296 13 7 8.5650 -1.2491 3.8047 14 6 9.8476 -1.1039 3.5916 15 7 10.0366 0.0741 2.9721 16 1 10.8838 0.4535 2.6904 17 7 8.7639 0.6460 2.8130 18 6 2.0412 -0.7235 1.2498 19 1 1.6057 -1.7215 1.2981 20 6 1.6510 0.0707 2.4979 21 6 2.0902 1.5271 2.3337 22 7 1.8554 2.2520 3.5849 23 6 2.1735 3.5808 3.6764 24 1 2.5978 4.0942 2.8264 25 6 1.9515 4.2675 4.8623 26 7 1.4358 3.6413 5.8988 27 14 2.3860 6.0800 4.9873 28 1 1.6104 6.8457 3.9787 29 1 2.0552 6.5756 6.3475 30 1 3.8384 6.2593 4.7353 31 1 -0.3633 0.5129 0.8906 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6979 -1.7572 -1.2352 35 1 1.6589 -0.2245 -2.1388 36 1 3.9345 -1.1887 -2.1663 37 1 3.9161 0.3399 -1.2535 38 1 5.1901 -1.3143 0.0110 39 1 3.8424 -2.4764 -0.0907 40 1 5.9980 -1.6459 2.0628 41 1 6.1746 -0.0747 1.2451 42 1 6.1883 1.0688 3.4453 43 1 6.0116 -0.5023 4.2629 44 1 10.6201 -1.8060 3.8683 45 1 0.5700 0.0301 2.6311 46 1 2.1412 -0.3604 3.3709 47 1 3.1516 1.5611 2.0878 48 1 1.5164 1.9914 1.5317 49 1 1.4740 1.7909 4.3484 50 1 1.2803 4.1213 6.7273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316674734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:03 Heat of formation + Delta-G solvation = 86.377003 kcal Electronic energy + Delta-G solvation = -30385.793294 eV Core-core repulsion = 26451.210993 eV Total energy + Delta-G solvation = -3934.582301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.23724 -40.68995 -37.62344 -35.29556 -34.08647 -33.56465 -32.60884 -32.06033 -30.80516 -30.55392 -28.36298 -26.44677 -25.73441 -24.35499 -23.16832 -22.82965 -21.96749 -21.14599 -20.38970 -19.58104 -18.53722 -18.44297 -16.93574 -16.58580 -15.87468 -15.77690 -15.48232 -15.22217 -14.79054 -14.62093 -14.21432 -14.08269 -13.78255 -13.46451 -13.11384 -12.97571 -12.79855 -12.65973 -12.40584 -12.27529 -12.23061 -12.06626 -11.75445 -11.59815 -11.25601 -11.11514 -10.99775 -10.76454 -10.70565 -10.58372 -10.31819 -10.24482 -10.16950 -10.13919 -10.05142 -9.80584 -9.74455 -9.43108 -8.63421 -8.44694 -8.12599 -6.52112 -5.49759 -2.73311 1.44802 2.49374 2.72369 3.00955 3.20405 3.58568 3.62056 3.63664 3.98280 4.50383 4.66111 4.71118 4.80627 4.82934 4.84204 4.96594 5.02947 5.13082 5.23912 5.27604 5.35457 5.50348 5.57213 5.65223 5.67846 5.71426 5.77753 5.81932 5.84921 5.92847 6.00282 6.05659 6.08730 6.12371 6.15525 6.23953 6.37929 6.41676 6.44400 6.61985 6.70911 6.77847 6.83277 6.86153 7.30824 7.42670 7.71253 7.91804 7.94157 8.64132 8.70610 9.80562 10.47912 10.82024 11.74043 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006721 B = 0.004697 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4164.854216 B = 5960.396671 C = 9305.616546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.113 4.113 5 C -0.137 4.137 6 C 0.111 3.889 7 N -0.612 5.612 8 C 0.494 3.506 9 O -0.473 6.473 10 C -0.127 4.127 11 C -0.015 4.015 12 C 0.237 3.763 13 N -0.540 5.540 14 C 0.256 3.744 15 N -0.489 5.489 16 H 0.440 0.560 17 N -0.311 5.311 18 C 0.162 3.838 19 H 0.064 0.936 20 C -0.131 4.131 21 C 0.175 3.825 22 N -0.722 5.722 23 C -0.220 4.220 24 H 0.063 0.937 25 C -0.020 4.020 26 N -0.936 5.936 27 Si 0.900 3.100 28 H -0.289 1.289 29 H -0.293 1.293 30 H -0.289 1.289 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.221 0.779 45 H 0.050 0.950 46 H 0.103 0.897 47 H 0.028 0.972 48 H -0.004 1.004 49 H 0.381 0.619 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.525 -16.555 -14.831 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.103 0.897 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.013 4.013 7 N -0.348 5.348 8 C 0.282 3.718 9 O -0.346 6.346 10 C -0.169 4.169 11 C -0.055 4.055 12 C -0.045 4.045 13 N -0.268 5.268 14 C -0.043 4.043 15 N -0.207 5.207 16 H 0.285 0.715 17 N -0.140 5.140 18 C 0.058 3.942 19 H 0.082 0.918 20 C -0.168 4.168 21 C 0.048 3.952 22 N -0.365 5.365 23 C -0.352 4.352 24 H 0.081 0.919 25 C -0.215 4.215 26 N -0.587 5.587 27 Si 0.732 3.268 28 H -0.216 1.216 29 H -0.219 1.219 30 H -0.216 1.216 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.237 0.763 45 H 0.068 0.932 46 H 0.121 0.879 47 H 0.045 0.955 48 H 0.013 0.987 49 H 0.214 0.786 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.917 -15.695 -14.457 24.944 hybrid contribution 1.139 0.953 0.015 1.485 sum 14.056 -14.742 -14.441 24.969 Atomic orbital electron populations 1.21786 0.94551 1.01415 1.02472 1.21665 0.96124 1.01026 0.94052 0.89697 1.21583 0.94853 1.00564 0.98075 1.21853 0.96629 1.01591 0.97407 1.21557 0.98115 0.96904 0.84700 1.47991 1.06531 1.62351 1.17939 1.20388 0.88569 0.79406 0.83455 1.91013 1.72944 1.37668 1.32948 1.21578 0.93215 1.02813 0.99267 1.19729 0.82228 1.04518 0.99000 1.24421 0.98021 0.87835 0.94255 1.70456 1.03234 1.27214 1.25929 1.26107 0.95678 0.88946 0.93579 1.48173 1.09123 1.16566 1.46851 0.71483 1.78115 0.88288 1.21615 1.25940 1.21274 0.78566 0.98310 0.96005 0.91793 1.22378 0.99505 0.97671 0.97248 1.20776 0.96764 0.88602 0.89074 1.42210 1.75751 1.07767 1.10728 1.19159 1.32986 0.86415 0.96682 0.91918 1.24644 1.02905 0.97635 0.96287 1.69657 1.51152 1.35168 1.02682 0.86355 0.77972 0.86052 0.76412 1.21627 1.21879 1.21617 0.91475 0.92825 0.93072 0.92134 0.91948 0.91111 0.91366 0.90099 0.91779 0.89129 0.89408 0.87996 0.88002 0.76284 0.93174 0.87942 0.95476 0.98704 0.78561 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.97 37.16 0.33 -1.42 16 2 C -0.11 -1.39 1.93 -90.50 -0.17 -1.57 16 3 H 0.08 1.31 6.14 -51.93 -0.32 0.99 16 4 C -0.11 -1.10 5.17 -26.69 -0.14 -1.24 16 5 C -0.14 -1.22 6.06 -26.83 -0.16 -1.38 16 6 C 0.11 1.03 6.30 -3.93 -0.02 1.01 16 7 N -0.61 -8.02 2.93 -165.48 -0.49 -8.50 16 8 C 0.49 7.62 6.60 -10.99 -0.07 7.55 16 9 O -0.47 -9.50 9.37 5.55 0.05 -9.44 16 10 C -0.13 -1.59 4.06 -27.89 -0.11 -1.70 16 11 C -0.01 -0.21 5.13 -27.89 -0.14 -0.36 16 12 C 0.24 3.29 7.39 -156.85 -1.16 2.13 16 13 N -0.54 -6.75 11.19 -11.98 -0.13 -6.88 16 14 C 0.26 2.07 13.13 -90.65 -1.19 0.88 16 15 N -0.49 -4.19 7.45 29.53 0.22 -3.97 16 16 H 0.44 2.01 8.96 -182.33 -1.63 0.37 16 17 N -0.31 -4.18 12.80 32.42 0.41 -3.76 16 18 C 0.16 2.27 2.67 -67.60 -0.18 2.09 16 19 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.13 -2.42 4.16 -26.73 -0.11 -2.53 16 21 C 0.17 3.95 4.23 -4.04 -0.02 3.93 16 22 N -0.72 -20.24 5.53 -59.91 -0.33 -20.57 16 23 C -0.22 -6.72 9.99 -15.06 -0.15 -6.87 16 24 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 26 N -0.94 -30.38 13.06 55.49 0.72 -29.66 16 27 Si 0.90 24.04 29.55 -169.99 -5.02 19.01 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 29 H -0.29 -7.82 7.11 56.52 0.40 -7.41 16 30 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 31 H 0.07 0.96 6.80 -51.93 -0.35 0.60 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.65 5.96 -51.93 -0.31 0.34 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.09 1.01 7.52 -51.93 -0.39 0.61 16 42 H 0.10 1.73 8.10 -51.93 -0.42 1.30 16 43 H 0.10 1.57 8.10 -51.93 -0.42 1.15 16 44 H 0.22 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.05 0.92 7.03 -51.93 -0.37 0.56 16 46 H 0.10 2.12 5.75 -53.04 -0.30 1.82 16 47 H 0.03 0.65 5.31 -51.93 -0.28 0.37 16 48 H 0.00 -0.10 6.61 -51.93 -0.34 -0.45 16 49 H 0.38 11.37 7.67 -40.82 -0.31 11.06 16 50 H 0.25 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -38.75 385.89 -11.37 -50.12 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -9.22 Total: 8.03 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.40 Total: -0.19 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: 0.41 Total: -73.34 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.05 Total: -9.44 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.02 Total: 19.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.75 -11.37 -50.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316674734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.498 kcal (2) G-P(sol) polarization free energy of solvation -38.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds