Wall clock time and date at job start Tue Mar 31 2020 23:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.49526 * 2 1 4 4 C 1.53041 * 109.52342 * 239.92356 * 2 1 3 5 5 C 1.53043 * 109.53644 * 178.67075 * 4 2 1 6 6 C 1.52757 * 109.38340 * 61.23591 * 5 4 2 7 7 N 1.46928 * 109.01189 * 305.58497 * 6 5 4 8 8 C 1.34769 * 120.63406 * 233.58864 * 7 6 5 9 9 O 1.21285 * 120.00169 * 175.94658 * 8 7 6 10 10 C 1.50702 * 120.00155 * 355.66540 * 8 7 6 11 11 C 1.52992 * 109.47284 * 180.27673 * 10 8 7 12 12 C 1.50702 * 109.47285 * 179.97438 * 11 10 8 13 13 N 1.33235 * 125.53224 * 269.69652 * 12 11 10 14 14 C 1.30831 * 109.83383 * 179.85524 * 13 12 11 15 15 N 1.34431 * 108.07193 * 0.39824 * 14 13 12 16 16 H 0.97007 * 126.82297 * 179.78580 * 15 14 13 17 17 N 1.30716 * 125.52371 * 89.99999 * 12 11 10 18 18 C 1.46934 * 118.73331 * 53.31295 * 7 6 5 19 19 H 1.09000 * 109.58438 * 66.42689 * 18 7 6 20 20 C 1.52995 * 109.58314 * 186.85374 * 18 7 6 21 21 C 1.53006 * 109.47131 * 67.79825 * 20 18 7 22 22 N 1.46496 * 109.47224 * 186.38777 * 21 20 18 23 23 C 1.36936 * 119.99942 * 180.02562 * 22 21 20 24 24 H 1.07994 * 120.00205 * 359.97438 * 23 22 21 25 25 C 1.38820 * 119.99653 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00191 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99676 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46948 * 60.00042 * 27 25 23 29 29 H 1.48497 * 109.46981 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47047 * 300.00547 * 27 25 23 31 31 H 1.09000 * 109.47015 * 299.93753 * 1 2 3 32 32 H 1.09002 * 109.46746 * 59.93032 * 1 2 3 33 33 H 1.08994 * 109.47046 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.45919 * 298.68345 * 4 2 1 35 35 H 1.08993 * 109.46064 * 58.64775 * 4 2 1 36 36 H 1.08995 * 109.49437 * 181.31451 * 5 4 2 37 37 H 1.09002 * 109.49432 * 301.40748 * 5 4 2 38 38 H 1.09004 * 109.50604 * 185.70468 * 6 5 4 39 39 H 1.09001 * 109.43496 * 65.43061 * 6 5 4 40 40 H 1.09007 * 109.47032 * 300.27593 * 10 8 7 41 41 H 1.09000 * 109.46763 * 60.27627 * 10 8 7 42 42 H 1.08998 * 109.47601 * 299.99918 * 11 10 8 43 43 H 1.09000 * 109.47258 * 60.00258 * 11 10 8 44 44 H 1.07992 * 125.96673 * 180.19733 * 14 13 12 45 45 H 1.08998 * 109.46946 * 187.79417 * 20 18 7 46 46 H 1.09001 * 109.47588 * 307.79873 * 20 18 7 47 47 H 1.08996 * 109.47367 * 306.39124 * 21 20 18 48 48 H 1.09000 * 109.46842 * 66.38821 * 21 20 18 49 49 H 0.97006 * 119.99785 * 359.97438 * 22 21 20 50 50 H 0.97001 * 119.99929 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0415 -0.7229 -1.2482 5 6 3.5715 -0.6942 -1.2654 6 6 4.1061 -1.4204 -0.0324 7 7 3.5047 -0.8281 1.1702 8 6 4.2807 -0.3842 2.1786 9 8 3.7770 0.1692 3.1332 10 6 5.7738 -0.5809 2.1233 11 6 6.4124 0.0038 3.3847 12 6 7.9054 -0.1935 3.3296 13 7 8.5650 -1.2491 3.8047 14 6 9.8476 -1.1039 3.5916 15 7 10.0366 0.0741 2.9721 16 1 10.8838 0.4535 2.6904 17 7 8.7639 0.6460 2.8130 18 6 2.0412 -0.7235 1.2498 19 1 1.6057 -1.7215 1.2981 20 6 1.6510 0.0707 2.4979 21 6 2.0902 1.5271 2.3337 22 7 1.8554 2.2520 3.5849 23 6 2.1735 3.5808 3.6764 24 1 2.5978 4.0942 2.8264 25 6 1.9515 4.2675 4.8623 26 7 1.4358 3.6413 5.8988 27 14 2.3860 6.0800 4.9873 28 1 1.6104 6.8457 3.9787 29 1 2.0552 6.5756 6.3475 30 1 3.8384 6.2593 4.7353 31 1 -0.3633 0.5129 0.8906 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6979 -1.7572 -1.2352 35 1 1.6589 -0.2245 -2.1388 36 1 3.9345 -1.1887 -2.1663 37 1 3.9161 0.3399 -1.2535 38 1 5.1901 -1.3143 0.0110 39 1 3.8424 -2.4764 -0.0907 40 1 5.9980 -1.6459 2.0628 41 1 6.1746 -0.0747 1.2451 42 1 6.1883 1.0688 3.4453 43 1 6.0116 -0.5023 4.2629 44 1 10.6201 -1.8060 3.8683 45 1 0.5700 0.0301 2.6311 46 1 2.1412 -0.3604 3.3709 47 1 3.1516 1.5611 2.0878 48 1 1.5164 1.9914 1.5317 49 1 1.4740 1.7909 4.3484 50 1 1.2803 4.1213 6.7273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316674734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:50 Heat of formation + Delta-G solvation = 59.456297 kcal Electronic energy + Delta-G solvation = -30386.960663 eV Core-core repulsion = 26451.210993 eV Total energy + Delta-G solvation = -3935.749670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 12.92 seconds Orbital eigenvalues (eV) -43.07136 -41.86649 -38.73214 -36.91031 -35.44206 -34.80691 -33.94377 -32.94510 -32.55827 -31.60184 -29.85324 -27.68067 -26.83479 -25.89923 -24.60104 -23.62857 -23.58168 -22.19448 -21.38674 -20.73645 -19.69922 -19.24789 -18.98976 -17.87189 -17.05535 -16.93544 -16.56784 -16.38216 -16.06943 -15.79751 -15.57710 -15.32740 -15.08826 -14.87199 -14.46304 -14.33920 -14.21854 -13.80860 -13.60074 -13.42334 -13.22526 -13.09050 -13.04495 -12.87271 -12.80518 -12.50968 -12.40888 -12.31244 -12.14002 -11.95250 -11.85850 -11.65952 -11.53633 -11.33816 -11.13521 -11.08095 -11.05277 -10.77326 -10.69933 -9.81743 -9.32627 -8.79630 -7.89220 -5.14364 0.66074 1.41270 1.46692 1.52527 1.79293 1.82687 1.87367 2.17698 2.57937 3.16952 3.42361 3.60810 3.71640 3.82960 3.87651 3.95044 4.08437 4.13439 4.18418 4.20631 4.32923 4.35148 4.42625 4.55742 4.62467 4.65731 4.68925 4.74352 4.89577 4.90719 4.91026 4.96512 4.99949 5.01198 5.09506 5.16414 5.26465 5.29748 5.30688 5.36476 5.40470 5.46530 5.51844 5.57099 5.61803 5.90478 6.29425 6.33359 6.60982 7.12040 7.37314 7.46541 8.22208 8.45159 9.35322 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006721 B = 0.004697 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4164.854216 B = 5960.396671 C = 9305.616546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.050 0.950 4 C -0.107 4.107 5 C -0.134 4.134 6 C 0.104 3.896 7 N -0.609 5.609 8 C 0.488 3.512 9 O -0.532 6.532 10 C -0.109 4.109 11 C -0.008 4.008 12 C 0.226 3.774 13 N -0.576 5.576 14 C 0.278 3.722 15 N -0.476 5.476 16 H 0.458 0.542 17 N -0.348 5.348 18 C 0.166 3.834 19 H 0.089 0.911 20 C -0.117 4.117 21 C 0.187 3.813 22 N -0.734 5.734 23 C -0.234 4.234 24 H 0.063 0.937 25 C -0.080 4.080 26 N -0.972 5.972 27 Si 0.971 3.029 28 H -0.276 1.276 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.277 0.723 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.019 0.981 48 H -0.010 1.010 49 H 0.368 0.632 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.575 -18.435 -17.519 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.069 0.931 4 C -0.144 4.144 5 C -0.172 4.172 6 C -0.018 4.018 7 N -0.343 5.343 8 C 0.277 3.723 9 O -0.410 6.410 10 C -0.150 4.150 11 C -0.048 4.048 12 C -0.057 4.057 13 N -0.306 5.306 14 C -0.020 4.020 15 N -0.195 5.195 16 H 0.307 0.693 17 N -0.178 5.178 18 C 0.062 3.938 19 H 0.106 0.894 20 C -0.155 4.155 21 C 0.061 3.939 22 N -0.375 5.375 23 C -0.366 4.366 24 H 0.081 0.919 25 C -0.272 4.272 26 N -0.624 5.624 27 Si 0.800 3.200 28 H -0.202 1.202 29 H -0.217 1.217 30 H -0.210 1.210 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.067 0.933 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.293 0.707 45 H 0.063 0.937 46 H 0.098 0.902 47 H 0.037 0.963 48 H 0.007 0.993 49 H 0.198 0.802 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.011 -17.595 -17.241 28.848 hybrid contribution 0.603 1.476 0.820 1.793 sum 15.614 -16.119 -16.421 27.808 Atomic orbital electron populations 1.21762 0.94150 1.02550 1.01491 1.21596 0.96465 0.99376 0.95124 0.93112 1.21556 0.95398 1.01238 0.96251 1.21861 0.95988 1.00845 0.98465 1.21918 0.98951 0.98046 0.82847 1.48118 1.06018 1.61474 1.18678 1.20950 0.89888 0.78429 0.83035 1.91001 1.74113 1.40572 1.35299 1.21457 0.90738 1.04271 0.98547 1.19454 0.83901 1.01976 0.99505 1.24092 0.97456 0.88808 0.95344 1.70413 1.05271 1.27448 1.27442 1.27126 0.95301 0.88717 0.90849 1.48077 1.08464 1.16619 1.46384 0.69301 1.77995 0.90133 1.22674 1.27018 1.21204 0.79619 0.98684 0.94261 0.89353 1.22138 0.98674 0.95528 0.99134 1.20808 0.95988 0.90607 0.86524 1.42438 1.75580 1.07486 1.12000 1.19524 1.32569 0.87649 0.96881 0.91890 1.25520 1.03310 1.02474 0.95887 1.69840 1.52487 1.36962 1.03087 0.85237 0.77858 0.80339 0.76540 1.20174 1.21683 1.20959 0.94556 0.91715 0.90830 0.90040 0.90995 0.87836 0.93290 0.88548 0.89089 0.86512 0.88025 0.91701 0.89903 0.70749 0.93727 0.90228 0.96346 0.99279 0.80161 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.97 71.98 0.65 -2.68 16 2 C -0.11 -2.62 1.93 -10.72 -0.02 -2.64 16 3 H 0.05 1.60 6.14 -2.38 -0.01 1.59 16 4 C -0.11 -1.74 5.17 30.62 0.16 -1.58 16 5 C -0.13 -1.94 6.06 30.53 0.19 -1.76 16 6 C 0.10 1.60 6.30 86.22 0.54 2.14 16 7 N -0.61 -15.43 2.93 -795.85 -2.34 -17.77 16 8 C 0.49 15.52 6.60 87.66 0.58 16.10 16 9 O -0.53 -23.03 9.37 -3.05 -0.03 -23.06 16 10 C -0.11 -2.73 4.06 29.85 0.12 -2.61 16 11 C -0.01 -0.24 5.13 29.85 0.15 -0.09 16 12 C 0.23 6.33 7.39 138.63 1.03 7.36 16 13 N -0.58 -13.73 11.19 -191.81 -2.15 -15.88 16 14 C 0.28 3.67 13.13 180.36 2.37 6.04 16 15 N -0.48 -7.15 7.45 -60.49 -0.45 -7.60 16 16 H 0.46 3.01 8.96 -213.09 -1.91 1.10 16 17 N -0.35 -9.27 12.80 -51.33 -0.66 -9.92 16 18 C 0.17 4.59 2.67 44.97 0.12 4.71 16 19 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 20 C -0.12 -4.59 4.16 30.59 0.13 -4.46 16 21 C 0.19 8.96 4.23 86.38 0.37 9.33 16 22 N -0.73 -43.73 5.53 -343.45 -1.90 -45.63 16 23 C -0.23 -14.87 9.99 84.04 0.84 -14.03 16 24 H 0.06 3.90 7.83 -2.91 -0.02 3.88 16 25 C -0.08 -5.12 5.50 84.86 0.47 -4.66 16 26 N -0.97 -65.45 13.06 21.65 0.28 -65.17 16 27 Si 0.97 50.76 29.55 68.60 2.03 52.78 16 28 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 29 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 30 H -0.28 -14.41 7.11 99.48 0.71 -13.70 16 31 H 0.04 1.06 6.80 -2.39 -0.02 1.04 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 1.22 5.96 -2.38 -0.01 1.21 16 39 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.12 2.31 8.09 -2.38 -0.02 2.29 16 41 H 0.10 2.26 7.52 -2.39 -0.02 2.24 16 42 H 0.06 2.45 8.10 -2.39 -0.02 2.43 16 43 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 44 H 0.28 0.04 8.06 -2.91 -0.02 0.01 16 45 H 0.04 1.74 7.03 -2.39 -0.02 1.73 16 46 H 0.08 3.55 5.75 -20.03 -0.12 3.43 16 47 H 0.02 0.95 5.31 -2.39 -0.01 0.93 16 48 H -0.01 -0.50 6.61 -2.39 -0.02 -0.52 16 49 H 0.37 23.45 7.67 -92.70 -0.71 22.74 16 50 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -90.86 385.89 0.72 -90.14 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: -1.75 Total: 30.93 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 7.68 Total: 11.18 kcal Atomic # 7 Polarization: -154.77 SS G_CDS: -7.20 Total: -161.97 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.03 Total: -23.06 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.03 Total: 52.78 kcal Total: -90.86 0.72 -90.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316674734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.601 kcal (2) G-P(sol) polarization free energy of solvation -90.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.92 seconds