Wall clock time and date at job start Tue Mar 31 2020 23:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.49856 * 2 1 4 4 C 1.53046 * 109.49435 * 120.08818 * 2 1 3 5 5 C 1.53041 * 109.53581 * 181.31486 * 4 2 1 6 6 C 1.53192 * 109.31433 * 298.63690 * 5 4 2 7 7 N 1.46929 * 108.77261 * 54.63826 * 6 5 4 8 8 C 1.34779 * 120.62930 * 126.36800 * 7 6 5 9 9 O 1.21275 * 119.99815 * 180.74382 * 8 7 6 10 10 C 1.50699 * 119.99818 * 0.74901 * 8 7 6 11 11 C 1.53009 * 109.46884 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46896 * 179.97438 * 11 10 8 13 13 N 1.33241 * 125.52048 * 90.00320 * 12 11 10 14 14 C 1.30838 * 109.82440 * 179.97438 * 13 12 11 15 15 N 1.34431 * 108.07919 * 0.02562 * 14 13 12 16 16 H 0.96996 * 126.82289 * 179.97438 * 15 14 13 17 17 N 1.30709 * 125.52897 * 269.68894 * 12 11 10 18 18 C 1.46920 * 118.73967 * 306.38723 * 7 6 5 19 19 H 1.09009 * 109.70417 * 293.75724 * 18 7 6 20 20 C 1.52998 * 109.58951 * 173.40265 * 18 7 6 21 21 C 1.53006 * 109.46433 * 293.95023 * 20 18 7 22 22 N 1.46507 * 109.46761 * 173.56940 * 21 20 18 23 23 C 1.36930 * 119.99811 * 180.02562 * 22 21 20 24 24 H 1.08003 * 120.00502 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99906 * 179.97438 * 23 22 21 26 26 N 1.31618 * 119.99723 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00023 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47441 * 59.99978 * 27 25 23 29 29 H 1.48505 * 109.47014 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47304 * 299.99750 * 27 25 23 31 31 H 1.09000 * 109.47262 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47229 * 300.07310 * 1 2 3 33 33 H 1.08999 * 109.46887 * 60.07078 * 1 2 3 34 34 H 1.08994 * 109.46176 * 301.34121 * 4 2 1 35 35 H 1.09003 * 109.45720 * 61.30069 * 4 2 1 36 36 H 1.08997 * 109.49579 * 58.59132 * 5 4 2 37 37 H 1.08998 * 109.49615 * 178.68560 * 5 4 2 38 38 H 1.08998 * 109.58238 * 174.41950 * 6 5 4 39 39 H 1.08996 * 109.58802 * 294.70191 * 6 5 4 40 40 H 1.09001 * 109.47148 * 299.99542 * 10 8 7 41 41 H 1.08992 * 109.47832 * 59.99757 * 10 8 7 42 42 H 1.09001 * 109.46979 * 299.99799 * 11 10 8 43 43 H 1.09004 * 109.46791 * 59.99822 * 11 10 8 44 44 H 1.08004 * 125.96031 * 180.02562 * 14 13 12 45 45 H 1.08991 * 109.47237 * 53.94899 * 20 18 7 46 46 H 1.08998 * 109.47459 * 173.95690 * 20 18 7 47 47 H 1.09000 * 109.47284 * 293.56611 * 21 20 18 48 48 H 1.09002 * 109.47331 * 53.57188 * 21 20 18 49 49 H 0.96998 * 119.99673 * 359.97438 * 22 21 20 50 50 H 0.97001 * 119.99699 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7233 1.2483 5 6 3.5708 -0.6953 1.2660 6 6 4.1053 -1.4268 0.0307 7 7 3.5046 -0.8289 -1.1696 8 6 4.2813 -0.3852 -2.1778 9 8 3.7740 0.1187 -3.1574 10 6 5.7799 -0.5153 -2.0879 11 6 6.4187 0.0604 -3.3535 12 6 7.9174 -0.0691 -3.2632 13 7 8.6314 -1.1106 -3.6886 14 6 9.9023 -0.9004 -3.4597 15 7 10.0271 0.3022 -2.8720 16 1 10.8509 0.7265 -2.5854 17 7 8.7281 0.8244 -2.7603 18 6 2.0414 -0.7235 -1.2497 19 1 1.6033 -1.7205 -1.2996 20 6 1.6518 0.0709 -2.4978 21 6 2.1303 1.5169 -2.3518 22 7 1.8953 2.2379 -3.6053 23 6 2.2465 3.5571 -3.7125 24 1 2.6971 4.0659 -2.8732 25 6 2.0243 4.2401 -4.9004 26 7 1.4764 3.6196 -5.9237 27 14 2.5027 6.0399 -5.0464 28 1 3.9629 6.1842 -4.8174 29 1 2.1642 6.5333 -6.4056 30 1 1.7619 6.8329 -4.0327 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5150 0.8893 33 1 -0.3633 0.5127 -0.8906 34 1 1.6581 -0.2249 2.1389 35 1 1.6967 -1.7575 1.2350 36 1 3.9159 0.3386 1.2543 37 1 3.9333 -1.1901 2.1670 38 1 5.1895 -1.3246 -0.0138 39 1 3.8397 -2.4823 0.0877 40 1 6.1406 0.0323 -1.2171 41 1 6.0483 -1.5673 -1.9922 42 1 6.0580 -0.4875 -4.2240 43 1 6.1503 1.1125 -3.4495 44 1 10.7103 -1.5753 -3.7009 45 1 2.1172 -0.3790 -3.3748 46 1 0.5682 0.0568 -2.6140 47 1 1.5805 2.0018 -1.5451 48 1 3.1958 1.5256 -2.1219 49 1 1.4915 1.7806 -4.3594 50 1 1.3215 4.0969 -6.7539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316674735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:21 Heat of formation + Delta-G solvation = 86.908296 kcal Electronic energy + Delta-G solvation = -30421.242163 eV Core-core repulsion = 26486.682901 eV Total energy + Delta-G solvation = -3934.559262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 11.32 seconds Orbital eigenvalues (eV) -42.22722 -40.69695 -37.61754 -35.28047 -34.07733 -33.56811 -32.60140 -32.04904 -30.79802 -30.55236 -28.36080 -26.43630 -25.74050 -24.35341 -23.16601 -22.82378 -21.95937 -21.15033 -20.38456 -19.57680 -18.54140 -18.44630 -16.93254 -16.58924 -15.87358 -15.77877 -15.46798 -15.22320 -14.77273 -14.61375 -14.20659 -14.08913 -13.79489 -13.46139 -13.12224 -12.97386 -12.80100 -12.67100 -12.40674 -12.25881 -12.18461 -12.06442 -11.75662 -11.59350 -11.25556 -11.11153 -10.99557 -10.76696 -10.71428 -10.58730 -10.33429 -10.23562 -10.16420 -10.14183 -10.04654 -9.79667 -9.74733 -9.43198 -8.62171 -8.44695 -8.13706 -6.52347 -5.49961 -2.73538 1.45788 2.50296 2.73133 3.01547 3.20827 3.58448 3.61933 3.63515 3.99036 4.51130 4.66158 4.71754 4.80622 4.82643 4.84285 4.96343 5.03231 5.13392 5.24399 5.27366 5.35646 5.50336 5.57623 5.65246 5.67672 5.71258 5.77408 5.81722 5.84623 5.92606 6.01250 6.06512 6.08536 6.12244 6.16605 6.23649 6.37816 6.42266 6.44218 6.61145 6.70643 6.77722 6.84234 6.86129 7.29953 7.41771 7.71381 7.91532 7.95013 8.64421 8.70384 9.80370 10.47570 10.81790 11.73842 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006620 B = 0.004825 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4228.595243 B = 5801.970858 C = 9205.841784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.110 3.890 7 N -0.612 5.612 8 C 0.496 3.504 9 O -0.474 6.474 10 C -0.127 4.127 11 C -0.015 4.015 12 C 0.237 3.763 13 N -0.540 5.540 14 C 0.256 3.744 15 N -0.489 5.489 16 H 0.440 0.560 17 N -0.310 5.310 18 C 0.162 3.838 19 H 0.064 0.936 20 C -0.131 4.131 21 C 0.173 3.827 22 N -0.722 5.722 23 C -0.220 4.220 24 H 0.063 0.937 25 C -0.020 4.020 26 N -0.936 5.936 27 Si 0.900 3.100 28 H -0.289 1.289 29 H -0.293 1.293 30 H -0.289 1.289 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.221 0.779 45 H 0.103 0.897 46 H 0.050 0.950 47 H -0.005 1.005 48 H 0.028 0.972 49 H 0.381 0.619 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.385 -16.084 15.148 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.103 0.897 4 C -0.151 4.151 5 C -0.174 4.174 6 C -0.013 4.013 7 N -0.348 5.348 8 C 0.283 3.717 9 O -0.347 6.347 10 C -0.169 4.169 11 C -0.055 4.055 12 C -0.045 4.045 13 N -0.269 5.269 14 C -0.043 4.043 15 N -0.207 5.207 16 H 0.285 0.715 17 N -0.139 5.139 18 C 0.058 3.942 19 H 0.082 0.918 20 C -0.168 4.168 21 C 0.046 3.954 22 N -0.364 5.364 23 C -0.352 4.352 24 H 0.081 0.919 25 C -0.215 4.215 26 N -0.586 5.586 27 Si 0.732 3.268 28 H -0.216 1.216 29 H -0.219 1.219 30 H -0.216 1.216 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.237 0.763 45 H 0.121 0.879 46 H 0.069 0.931 47 H 0.013 0.987 48 H 0.045 0.955 49 H 0.214 0.786 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.758 -15.264 14.741 24.760 hybrid contribution 1.149 1.000 -0.009 1.523 sum 13.907 -14.264 14.732 24.777 Atomic orbital electron populations 1.21789 0.94556 1.01429 1.02456 1.21655 0.96109 1.01003 0.94059 0.89728 1.21584 0.94874 1.00563 0.98054 1.21926 0.96598 1.01538 0.97387 1.21646 0.98147 0.96820 0.84711 1.47990 1.06537 1.62172 1.18094 1.20369 0.88642 0.79023 0.83646 1.91000 1.73068 1.39383 1.31206 1.21576 0.93114 1.02894 0.99288 1.19733 0.82043 1.04886 0.98821 1.24420 0.98136 0.87362 0.94618 1.70463 1.01937 1.28476 1.25978 1.26108 0.96470 0.88043 0.93713 1.48174 1.08867 1.15771 1.47902 0.71486 1.78122 0.87668 1.22058 1.26048 1.21261 0.78589 0.98329 0.95979 0.91810 1.22368 0.99436 0.97709 0.97305 1.20803 0.96820 0.88694 0.89049 1.42207 1.74079 1.08888 1.11260 1.19156 1.31893 0.87169 0.97025 0.91923 1.24643 1.02725 0.97732 0.96371 1.69658 1.50248 1.35522 1.03220 0.86356 0.78058 0.85927 0.76448 1.21613 1.21879 1.21628 0.93059 0.92818 0.91494 0.91951 0.92129 0.91346 0.91154 0.90086 0.91724 0.89375 0.89157 0.88025 0.87943 0.76288 0.87931 0.93144 0.98742 0.95477 0.78551 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.97 37.16 0.33 -1.41 16 2 C -0.11 -1.38 1.98 -90.50 -0.18 -1.56 16 3 H 0.08 1.30 6.17 -51.93 -0.32 0.97 16 4 C -0.11 -1.10 5.17 -26.69 -0.14 -1.24 16 5 C -0.14 -1.21 6.08 -26.61 -0.16 -1.38 16 6 C 0.11 1.03 6.34 -3.71 -0.02 1.00 16 7 N -0.61 -8.03 2.93 -165.23 -0.48 -8.51 16 8 C 0.50 7.67 6.45 -10.99 -0.07 7.60 16 9 O -0.47 -9.53 9.46 5.56 0.05 -9.48 16 10 C -0.13 -1.60 4.03 -27.88 -0.11 -1.71 16 11 C -0.01 -0.22 5.13 -27.88 -0.14 -0.36 16 12 C 0.24 3.32 7.39 -156.86 -1.16 2.16 16 13 N -0.54 -6.79 11.19 -11.97 -0.13 -6.92 16 14 C 0.26 2.09 13.13 -90.65 -1.19 0.90 16 15 N -0.49 -4.25 7.45 29.53 0.22 -4.03 16 16 H 0.44 2.06 8.96 -182.34 -1.63 0.43 16 17 N -0.31 -4.23 12.80 32.42 0.41 -3.81 16 18 C 0.16 2.28 2.66 -67.61 -0.18 2.10 16 19 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 20 C -0.13 -2.42 4.19 -26.73 -0.11 -2.54 16 21 C 0.17 3.91 4.29 -4.03 -0.02 3.89 16 22 N -0.72 -20.23 5.53 -59.90 -0.33 -20.56 16 23 C -0.22 -6.71 9.99 -15.06 -0.15 -6.86 16 24 H 0.06 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 26 N -0.94 -30.37 13.06 55.49 0.72 -29.64 16 27 Si 0.90 24.04 29.55 -169.99 -5.02 19.01 16 28 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 29 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 30 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.95 6.76 -51.93 -0.35 0.60 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.65 5.94 -51.93 -0.31 0.35 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.03 7.66 -51.93 -0.40 0.63 16 41 H 0.09 0.97 7.97 -51.93 -0.41 0.55 16 42 H 0.10 1.57 8.10 -51.93 -0.42 1.15 16 43 H 0.10 1.76 8.10 -51.93 -0.42 1.34 16 44 H 0.22 0.58 8.06 -52.48 -0.42 0.16 16 45 H 0.10 2.13 5.79 -52.85 -0.31 1.82 16 46 H 0.05 0.93 6.94 -51.93 -0.36 0.57 16 47 H 0.00 -0.11 6.62 -51.93 -0.34 -0.45 16 48 H 0.03 0.65 5.16 -51.93 -0.27 0.38 16 49 H 0.38 11.37 7.67 -40.82 -0.31 11.06 16 50 H 0.25 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -38.74 385.74 -11.36 -50.09 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -9.21 Total: 8.15 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -3.40 Total: -0.11 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: 0.41 Total: -73.48 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.05 Total: -9.48 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.02 Total: 19.01 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.74 -11.36 -50.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316674735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.999 kcal (2) G-P(sol) polarization free energy of solvation -38.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.33 seconds