Wall clock time and date at job start Tue Mar 31 2020 23:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.49856 * 2 1 4 4 C 1.53046 * 109.49435 * 120.08818 * 2 1 3 5 5 C 1.53041 * 109.53581 * 181.31486 * 4 2 1 6 6 C 1.53192 * 109.31433 * 298.63690 * 5 4 2 7 7 N 1.46929 * 108.77261 * 54.63826 * 6 5 4 8 8 C 1.34779 * 120.62930 * 126.36800 * 7 6 5 9 9 O 1.21275 * 119.99815 * 180.74382 * 8 7 6 10 10 C 1.50699 * 119.99818 * 0.74901 * 8 7 6 11 11 C 1.53009 * 109.46884 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46896 * 179.97438 * 11 10 8 13 13 N 1.33241 * 125.52048 * 90.00320 * 12 11 10 14 14 C 1.30838 * 109.82440 * 179.97438 * 13 12 11 15 15 N 1.34431 * 108.07919 * 0.02562 * 14 13 12 16 16 H 0.96996 * 126.82289 * 179.97438 * 15 14 13 17 17 N 1.30709 * 125.52897 * 269.68894 * 12 11 10 18 18 C 1.46920 * 118.73967 * 306.38723 * 7 6 5 19 19 H 1.09009 * 109.70417 * 293.75724 * 18 7 6 20 20 C 1.52998 * 109.58951 * 173.40265 * 18 7 6 21 21 C 1.53006 * 109.46433 * 293.95023 * 20 18 7 22 22 N 1.46507 * 109.46761 * 173.56940 * 21 20 18 23 23 C 1.36930 * 119.99811 * 180.02562 * 22 21 20 24 24 H 1.08003 * 120.00502 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99906 * 179.97438 * 23 22 21 26 26 N 1.31618 * 119.99723 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00023 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47441 * 59.99978 * 27 25 23 29 29 H 1.48505 * 109.47014 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47304 * 299.99750 * 27 25 23 31 31 H 1.09000 * 109.47262 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47229 * 300.07310 * 1 2 3 33 33 H 1.08999 * 109.46887 * 60.07078 * 1 2 3 34 34 H 1.08994 * 109.46176 * 301.34121 * 4 2 1 35 35 H 1.09003 * 109.45720 * 61.30069 * 4 2 1 36 36 H 1.08997 * 109.49579 * 58.59132 * 5 4 2 37 37 H 1.08998 * 109.49615 * 178.68560 * 5 4 2 38 38 H 1.08998 * 109.58238 * 174.41950 * 6 5 4 39 39 H 1.08996 * 109.58802 * 294.70191 * 6 5 4 40 40 H 1.09001 * 109.47148 * 299.99542 * 10 8 7 41 41 H 1.08992 * 109.47832 * 59.99757 * 10 8 7 42 42 H 1.09001 * 109.46979 * 299.99799 * 11 10 8 43 43 H 1.09004 * 109.46791 * 59.99822 * 11 10 8 44 44 H 1.08004 * 125.96031 * 180.02562 * 14 13 12 45 45 H 1.08991 * 109.47237 * 53.94899 * 20 18 7 46 46 H 1.08998 * 109.47459 * 173.95690 * 20 18 7 47 47 H 1.09000 * 109.47284 * 293.56611 * 21 20 18 48 48 H 1.09002 * 109.47331 * 53.57188 * 21 20 18 49 49 H 0.96998 * 119.99673 * 359.97438 * 22 21 20 50 50 H 0.97001 * 119.99699 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7233 1.2483 5 6 3.5708 -0.6953 1.2660 6 6 4.1053 -1.4268 0.0307 7 7 3.5046 -0.8289 -1.1696 8 6 4.2813 -0.3852 -2.1778 9 8 3.7740 0.1187 -3.1574 10 6 5.7799 -0.5153 -2.0879 11 6 6.4187 0.0604 -3.3535 12 6 7.9174 -0.0691 -3.2632 13 7 8.6314 -1.1106 -3.6886 14 6 9.9023 -0.9004 -3.4597 15 7 10.0271 0.3022 -2.8720 16 1 10.8509 0.7265 -2.5854 17 7 8.7281 0.8244 -2.7603 18 6 2.0414 -0.7235 -1.2497 19 1 1.6033 -1.7205 -1.2996 20 6 1.6518 0.0709 -2.4978 21 6 2.1303 1.5169 -2.3518 22 7 1.8953 2.2379 -3.6053 23 6 2.2465 3.5571 -3.7125 24 1 2.6971 4.0659 -2.8732 25 6 2.0243 4.2401 -4.9004 26 7 1.4764 3.6196 -5.9237 27 14 2.5027 6.0399 -5.0464 28 1 3.9629 6.1842 -4.8174 29 1 2.1642 6.5333 -6.4056 30 1 1.7619 6.8329 -4.0327 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5150 0.8893 33 1 -0.3633 0.5127 -0.8906 34 1 1.6581 -0.2249 2.1389 35 1 1.6967 -1.7575 1.2350 36 1 3.9159 0.3386 1.2543 37 1 3.9333 -1.1901 2.1670 38 1 5.1895 -1.3246 -0.0138 39 1 3.8397 -2.4823 0.0877 40 1 6.1406 0.0323 -1.2171 41 1 6.0483 -1.5673 -1.9922 42 1 6.0580 -0.4875 -4.2240 43 1 6.1503 1.1125 -3.4495 44 1 10.7103 -1.5753 -3.7009 45 1 2.1172 -0.3790 -3.3748 46 1 0.5682 0.0568 -2.6140 47 1 1.5805 2.0018 -1.5451 48 1 3.1958 1.5256 -2.1219 49 1 1.4915 1.7806 -4.3594 50 1 1.3215 4.0969 -6.7539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316674735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:20 Heat of formation + Delta-G solvation = 60.009234 kcal Electronic energy + Delta-G solvation = -30422.408594 eV Core-core repulsion = 26486.682901 eV Total energy + Delta-G solvation = -3935.725693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 12.34 seconds Orbital eigenvalues (eV) -43.07117 -41.87863 -38.72632 -36.90083 -35.44296 -34.80304 -33.94209 -32.94366 -32.55229 -31.60290 -29.85110 -27.67477 -26.84012 -25.89957 -24.60741 -23.62058 -23.57577 -22.20211 -21.38874 -20.73447 -19.71333 -19.24829 -18.99178 -17.87604 -17.08531 -16.93046 -16.56828 -16.37224 -16.07531 -15.78350 -15.58285 -15.31188 -15.07946 -14.88343 -14.47374 -14.35229 -14.21747 -13.81459 -13.57326 -13.41243 -13.22886 -13.09068 -13.04461 -12.87214 -12.80561 -12.50735 -12.40274 -12.31825 -12.14367 -11.95165 -11.86495 -11.66212 -11.54878 -11.34479 -11.13548 -11.08030 -11.05462 -10.76995 -10.70097 -9.80597 -9.34178 -8.79688 -7.89347 -5.14490 0.66117 1.41137 1.46537 1.52341 1.78706 1.83029 1.87436 2.17667 2.57804 3.16865 3.42242 3.60871 3.71392 3.82886 3.87330 3.95101 4.07978 4.13393 4.18261 4.20605 4.32415 4.34747 4.42608 4.55657 4.62285 4.65413 4.68772 4.74016 4.89427 4.90495 4.91112 4.96276 4.99433 5.01020 5.09275 5.16675 5.26448 5.29602 5.30498 5.36323 5.40313 5.46317 5.51066 5.56975 5.62026 5.89919 6.29460 6.33196 6.60677 7.11890 7.37207 7.46328 8.21887 8.44952 9.35204 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006620 B = 0.004825 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4228.595243 B = 5801.970858 C = 9205.841784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.051 0.949 4 C -0.107 4.107 5 C -0.133 4.133 6 C 0.103 3.897 7 N -0.608 5.608 8 C 0.489 3.511 9 O -0.533 6.533 10 C -0.109 4.109 11 C -0.008 4.008 12 C 0.226 3.774 13 N -0.576 5.576 14 C 0.278 3.722 15 N -0.476 5.476 16 H 0.458 0.542 17 N -0.348 5.348 18 C 0.166 3.834 19 H 0.088 0.912 20 C -0.117 4.117 21 C 0.185 3.815 22 N -0.734 5.734 23 C -0.233 4.233 24 H 0.063 0.937 25 C -0.080 4.080 26 N -0.972 5.972 27 Si 0.971 3.029 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.276 1.276 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.278 0.722 45 H 0.079 0.921 46 H 0.045 0.955 47 H -0.011 1.011 48 H 0.020 0.980 49 H 0.368 0.632 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.477 -17.887 17.891 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.069 0.931 4 C -0.144 4.144 5 C -0.171 4.171 6 C -0.018 4.018 7 N -0.343 5.343 8 C 0.278 3.722 9 O -0.410 6.410 10 C -0.150 4.150 11 C -0.048 4.048 12 C -0.057 4.057 13 N -0.305 5.305 14 C -0.020 4.020 15 N -0.196 5.196 16 H 0.307 0.693 17 N -0.179 5.179 18 C 0.062 3.938 19 H 0.106 0.894 20 C -0.155 4.155 21 C 0.059 3.941 22 N -0.375 5.375 23 C -0.366 4.366 24 H 0.081 0.919 25 C -0.272 4.272 26 N -0.624 5.624 27 Si 0.800 3.200 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.202 1.202 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.293 0.707 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.006 0.994 48 H 0.038 0.962 49 H 0.198 0.802 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.893 -17.086 17.582 28.686 hybrid contribution 0.600 1.501 -0.830 1.817 sum 15.493 -15.585 16.752 27.633 Atomic orbital electron populations 1.21766 0.94135 1.02559 1.01507 1.21587 0.96465 0.99366 0.95091 0.93096 1.21558 0.95416 1.01227 0.96246 1.21931 0.95959 1.00816 0.98415 1.22008 0.98994 0.97935 0.82875 1.48115 1.06030 1.61300 1.18815 1.20923 0.89960 0.78055 0.83251 1.90989 1.74209 1.42270 1.33564 1.21457 0.90681 1.04423 0.98478 1.19455 0.83737 1.02225 0.99407 1.24090 0.97585 0.88326 0.95693 1.70420 1.03830 1.28729 1.27547 1.27136 0.96263 0.87740 0.90853 1.48075 1.08059 1.15978 1.47439 0.69309 1.78002 0.89688 1.23038 1.27148 1.21192 0.79626 0.98685 0.94264 0.89423 1.22128 0.98592 0.95597 0.99167 1.20844 0.96188 0.90628 0.86471 1.42434 1.73886 1.08614 1.12545 1.19518 1.31474 0.88369 0.97219 0.91896 1.25517 1.03193 1.02496 0.95989 1.69840 1.51615 1.37303 1.03613 0.85240 0.77858 0.80323 0.76565 1.20966 1.21683 1.20177 0.90845 0.91681 0.94537 0.90970 0.90063 0.93220 0.87890 0.88532 0.89073 0.88107 0.86455 0.89835 0.91797 0.70715 0.90254 0.93689 0.99355 0.96215 0.80156 0.94228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.97 71.98 0.65 -2.67 16 2 C -0.11 -2.59 1.98 -10.71 -0.02 -2.62 16 3 H 0.05 1.60 6.17 -2.39 -0.01 1.58 16 4 C -0.11 -1.73 5.17 30.62 0.16 -1.58 16 5 C -0.13 -1.93 6.08 30.67 0.19 -1.74 16 6 C 0.10 1.60 6.34 86.36 0.55 2.14 16 7 N -0.61 -15.47 2.93 -795.04 -2.33 -17.79 16 8 C 0.49 15.63 6.45 87.66 0.57 16.19 16 9 O -0.53 -23.08 9.46 -3.01 -0.03 -23.11 16 10 C -0.11 -2.77 4.03 29.85 0.12 -2.65 16 11 C -0.01 -0.24 5.13 29.85 0.15 -0.09 16 12 C 0.23 6.40 7.39 138.63 1.03 7.42 16 13 N -0.58 -13.79 11.19 -191.80 -2.15 -15.93 16 14 C 0.28 3.72 13.13 180.36 2.37 6.08 16 15 N -0.48 -7.28 7.45 -60.48 -0.45 -7.73 16 16 H 0.46 3.14 8.96 -213.10 -1.91 1.22 16 17 N -0.35 -9.42 12.80 -51.34 -0.66 -10.08 16 18 C 0.17 4.60 2.66 44.97 0.12 4.72 16 19 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 20 C -0.12 -4.59 4.19 30.60 0.13 -4.47 16 21 C 0.18 8.86 4.29 86.38 0.37 9.23 16 22 N -0.73 -43.69 5.53 -343.42 -1.90 -45.59 16 23 C -0.23 -14.83 9.99 84.04 0.84 -13.99 16 24 H 0.06 3.90 7.83 -2.91 -0.02 3.87 16 25 C -0.08 -5.13 5.50 84.86 0.47 -4.66 16 26 N -0.97 -65.44 13.06 21.65 0.28 -65.15 16 27 Si 0.97 50.76 29.55 68.60 2.03 52.79 16 28 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 29 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 30 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 1.06 6.76 -2.39 -0.02 1.04 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 1.22 5.94 -2.39 -0.01 1.21 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 2.29 7.66 -2.39 -0.02 2.28 16 41 H 0.12 2.33 7.97 -2.39 -0.02 2.31 16 42 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 43 H 0.06 2.46 8.10 -2.39 -0.02 2.44 16 44 H 0.28 0.06 8.06 -2.91 -0.02 0.04 16 45 H 0.08 3.54 5.79 -16.96 -0.10 3.44 16 46 H 0.04 1.76 6.94 -2.39 -0.02 1.74 16 47 H -0.01 -0.54 6.62 -2.39 -0.02 -0.55 16 48 H 0.02 1.01 5.16 -2.39 -0.01 1.00 16 49 H 0.37 23.45 7.67 -92.71 -0.71 22.74 16 50 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -90.84 385.74 0.74 -90.10 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -1.74 Total: 31.16 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 7.67 Total: 11.34 kcal Atomic # 7 Polarization: -155.09 SS G_CDS: -7.19 Total: -162.28 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.03 Total: -23.11 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.03 Total: 52.79 kcal Total: -90.84 0.74 -90.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316674735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.111 kcal (2) G-P(sol) polarization free energy of solvation -90.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.34 seconds